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Moved initialization / cloning of extreme points list to base class
Removed residual space from base class and put it into derived class for 3d bin packing
Updated sample

07/13/17:

18:25 Changeset [15240] by jkarder

#2762: added AfterDeserialization hook to initialize ResidualSpace

17:49 Ticket #2807 (PartialDependencePlot throws Exception with constant values) closed by mkommend

done: r15239: Merged r15211, r15213, r15222 into stable.

17:48 Changeset [15239] by mkommend

#2807: Merged r15211, r15213, r15222 into stable.

17:47 Ticket #2792 (Genetic algorithm should choose a mutation operator by default) closed by mkommend

done: r15238: Merged r15006:r15008, r15047, r15049, r15070, r15107 into stable.

17:46 Changeset [15238] by mkommend

#2792: Merged r15006:r15008, r15047, r15049, r15070, r15107 into stable.

17:44 Ticket #2540 (StringConvertibleMatrixView may throw an exception if it is reused) closed by mkommend

done: r15237: Merged r15074 into stable.

17:43 Changeset [15237] by mkommend

#2540: Merged r15074 into stable.

17:13 Changeset [15236] by jkarder

#2592: fixed project file

switched target framework from .NET 4.5.2 to 4.5
added pre build event for mono builds

16:35 Changeset [15235] by mkommend

#2802: Implemented new sample with strict OS for sym reg (Paige-I) with constant optimization and a simplified grammar.

16:07 Changeset [15234] by abeham

#2700: fixed some typos

16:05 Changeset [15233] by abeham

#2762: fixed project files

15:53 Changeset [15232] by jkarder

#2258: worked on exception handling

15:30 Changeset [15231] by abeham

#2762: removed branch

15:25 Changeset [15230] by abeham

#2762: integrated bin packing extension into trunk

15:22 Changeset [15229] by abeham

#2762:

Implemented review comments
Fixed ResidualSpaceBestFitExtremePointPermutationDecoder by sorting from smallest to largest (merit function should be minimized)
Some restructuring of the methods

15:04 Changeset [15228] by abeham

#2797: reduced precision in unit test to 1e-08 and renamed test class

11:33 Changeset [15227] by bwerth

#2700 fixed parameter names

11:22 Changeset [15226] by pfleck

#2592 Changed item name as suggested by abeham.

11:07 Changeset [15225] by bwerth

#2700 worked on review comments for tsne

10:30 Changeset [15224] by abeham

#2797: updated project file

10:21 Changeset [15223] by abeham

#2797: Updated sample to change from Schwefel to Rastrigin (in the hope that it's numerically more stable)

07/12/17:

22:59 Changeset [15222] by mkommend

#2807: Removed obsolete comments from partial dependence plots.

22:40 Changeset [15221] by abeham

#2592: changed item image of pareto front scatter plot

22:00 Ticket #745 (More advanced linear regression methods with included feature selection) closed by abeham

done: r15220: merged revisions 14102, 14647, 14652, 14654, 14734, 14737, …

22:00 Ticket #2634 (Run-length distribution (RLD) Analysis of Algorithm Instances) closed by abeham

done: r15220: merged revisions 14102, 14647, 14652, 14654, 14734, 14737, …

22:00 Ticket #2744 (Add content and view for Gantt visualization) closed by abeham

done: r15220: merged revisions 14102, 14647, 14652, 14654, 14734, 14737, …

21:59 Changeset [15220] by abeham

#2634, #2744, #745: merged revisions 14102, 14647, 14652, 14654, 14734, 14737, 14775, 15048, 15125, 15126 to stable, reverted changes from revision 15153

21:08 Ticket #2790 (Island GA throws exception when applied to JSSP) closed by abeham

done: r15219: merged revisions 15072, 15083, 15168 to stable

21:07 Ticket #2696 (Clear BestKnownSolution and BestKnownQuality when problem instances changes) closed by abeham

done: r15219: merged revisions 15072, 15083, 15168 to stable

21:07 Changeset [15219] by abeham

#2696, #2790: merged revisions 15072, 15083, 15168 to stable

21:04 Ticket #2803 (Fix igraph tests) closed by abeham

done: r15218: merged revisions 15191, 15192 to stable

21:04 Changeset [15218] by abeham

#2803: merged revisions 15191, 15192 to stable

21:03 Ticket #2736 (Implement Graph Coloring Problem) closed by abeham

done: r15217: merged revisions 14412, 14475, 14476, 14659, 14660, 14663, …

21:02 Ticket #2730 (Add similarity calculators and equality comparers for encodings) closed by abeham

done: r15217: merged revisions 14412, 14475, 14476, 14659, 14660, 14663, …

21:02 Ticket #2706 (Binary problems should include similarity calculators for population ...) closed by abeham

done: r15217: merged revisions 14412, 14475, 14476, 14659, 14660, 14663, …

21:02 Ticket #2666 (Improve Performance of LinearLinkageEncoding) closed by abeham

done

21:02 Changeset [15217] by abeham

#2666, #2706, #2730, #2736: merged revisions 14412, 14475, 14476, 14659, 14660, 14663, 14779, 14780, 14912, 15050, 15067, 15069, 15079, 15162, 15166, 15172, 15173 to stable

19:49 Changeset [15216] by jkarder

#2258: reset startPending if an exception is thrown before OnStarted is called

16:50 Changeset [15215] by jkarder

#2258: worked on execution of basic algorithm

16:49 Changeset [15214] by abeham

#2797:

Fixed adaptive random topology updater
Adapted default values of the best attraction parameters
Changed code of the new topology initializer
Fixed the parameters of the SPSO particle updaters (c parameter is actually (personal|neighbor)bestattraction), reordered the method signature and provided defaults
Removed the max beyond parameter again
Updated the sample and updated the unit test
- In the sample no inertia updating is used, but the topology initializers / updaters of SPSO are used

16:23 Changeset [15213] by mkommend

#2807: Initialized trainingMin and trainingMax with reasonable values.

16:07 Changeset [15212] by jkarder

#2258: worked on execution of cross-validation

16:00 Ticket #2808 (Exception when changing the threshold in a classification threshold view) created by gkronber

Stack trace: […]

16:00 Changeset [15211] by mkommend

#2807: Made partial dependence plot work with constant variable values.

15:58 Ticket #2807 (PartialDependencePlot throws Exception with constant values) created by mkommend

Could be easily tested with a LR and Miba CF3.

15:45 Changeset [15210] by pfleck

#2709 Fixed some small issues and some default behavior.

15:39 Changeset [15209] by bwerth

#2700 fixed .cspropj

15:27 Changeset [15208] by bwerth

#2700 forgot to commit changes in .csproj -file

15:17 Changeset [15207] by bwerth

#2700 worked on TSNE (mostly removing unused code)

14:37 Ticket #2806 (Positive class value setting from classification problems is not set ...) created by gkronber

Steps to reproduce: - New RF for classification - Load UCI problem …

11:23 Changeset [15206] by bwerth

#2592 removed redundant paused/stopped check

10:46 Changeset [15205] by pfleck

#2592 Speed-up MOCMAES by batch-incrementing Evaluations to reduce update-overhead

10:09 Ticket #2651 (Integrate igraph in HeuristicLab) closed by gkronber

done

10:09 Ticket #2805 (Update mergeinfo of stable branch to include already merged revisions) created by gkronber

Some changesets which have been merged to stable have not been added …

10:07 Ticket #2801 (Typos in csv importer dialog) closed by gkronber

done

10:07 Ticket #2757 (Provide friction test datasets as regression problem instances) closed by gkronber

done

10:07 Ticket #2660 (Extend VariableNetworkInstances to include problems with no noise and ...) closed by gkronber

done

07/11/17:

21:58 Changeset [15204] by jkarder

#2258: worked on execution of cross-validation

19:36 Changeset [15203] by pfleck

#2592

Renamed ScatterPlotContent to ParetoFrontScatterPlot (also renamed corresponding view).
Refactored ParetoFrontScatterPlotView (use ScatterPlot internally).

18:07 Changeset [15202] by mkommend

#2762: Changes of access modifiers in ThreeDInstanceDescriptor.

15:24 Changeset [15201] by abeham

#2797: simplified faster cloning of RealVector

14:53 Changeset [15200] by abeham

#2762: small changes to the results output

13:22 Changeset [15199] by gkronber

#2722: added merge info for r14528 and r15198 to stable to align with trunk

13:18 Changeset [15198] by gkronber

#2722: removed evaluator for learning of variance models from the trunk to prepare for release

13:14 Ticket #2804 (Redesign solution types) created by abeham

A lot of encoded solution types (e.g. BinaryVector, RealVector, etc.) …

13:06 WikiStart edited by swagner

Removed JetBrains acknowledgements as they do not provide free … (diff)

13:02 Changeset [15197] by gkronber

#2081: merged r15184 and r15185 from trunk to stable

13:00 Ticket #2688 (Encoding is not forwarded to the table file parser while importing CSV ...) closed by gkronber

done

12:58 Changeset [15196] by gkronber

#2757: merged r14789,r14790,r14791,r14853,r15016 from trunk to stable

12:55 Changeset [15195] by gkronber

#2660: merged r14260,r14271,r14291,r14623,r14630,r15194 from trunk to stable

12:53 Ticket #2782 (Gaussian process regression should also calculate the leave-one-out ...) closed by gkronber

done

12:52 Changeset [15194] by gkronber

#2660 added reference publication for variable network instances

12:42 Ticket #2799 (DataTable and ScatterPlotView (De)RegisterEvents base-calls missing) closed by pfleck

done: r15193: merged to stable

12:41 Changeset [15193] by pfleck

#2799: merged to stable

11:31 Changeset [15192] by abeham

#2803: improved shuffle test a little

11:19 Changeset [15191] by abeham

#2803: fixed tests

10:01 Ticket #2803 (Fix igraph tests) created by abeham

Shuffle test does not actually test if the vector is shuffled. And …

08:29 Ticket #2802 (Provide a well-configured sample for symbolic regression with GP with ...) created by gkronber

07/10/17:

22:04 Changeset [15190] by abeham

#2258: fixed starting of cloned algs

21:36 Changeset [15189] by pkimmesw

#2665 Fixed small issues, testet benchmark suite, added INX Expressions

19:19 Changeset [15188] by gkronber

#2782: merged r14899,r14918,r15160,r15163,r15165,r15187 from trunk to stable

19:16 Changeset [15187] by gkronber

#2782: renamed remaining fields and properties referring to 'PredictiveProbability'

19:04 Changeset [15186] by gkronber

#2688: merged r14343 from trunk to stable

19:02 Ticket #2661 (Remove bugs in TableFileParser) closed by gkronber

done

19:02 Ticket #2723 (Providing variable values as double[] to Dataset fails at runtime) closed by gkronber

done

18:59 Changeset [15185] by gkronber

#2801: renamed classes for import dialogs

18:54 Changeset [15184] by gkronber

#2801: fixed two typos in the DataAnalysisImportDialog

18:53 Ticket #2801 (Typos in csv importer dialog) created by gkronber

18:01 Changeset [15183] by abeham

#2762:

Changed ItemName of ExtremePointAlgorithm
Added project references

17:41 Changeset [15182] by abeham

#2762: Merged trunk into branch

17:26 Changeset [15181] by abeham

#2797:

Added IStochasticOperator interface to MultiPSOTopologyUpdater
Changed parameter defaults to those described in the paper
Added analyzer placeholder for the last iteration (has not been previously analyzed)
Changed random topology initializer to include itself (to be able to use it with SPSOSwarmUpdater -> this should not change the old RealVectorSwarmUpdater)
Changed ring topology initializer to include itself (same as above)
Changed von neumann topology initializer to include itself (same as above)
Added SPSO compatible random topology initializer (as described in the paper by Clerc)
Changed sampling of the random directional vector to be uniformly random on the surface of a hypersphere to avoid a slight bias in diagonal direction
Updating SwarmBestQuality and BestRealVector parameters in SPSOSwarmUpdater (an oversight)
Added a faster method to create a copy of a RealVector (based on Array.Copy)
Updated the sample
Updated the sample's test results (due to changed sampling in SPSO2011ParticleUpdater)

17:05 Changeset [15180] by pfleck

#2592: Added another missing reference.

16:42 Changeset [15179] by pfleck

#2592: Added missing reference

16:25 Changeset [15178] by pfleck

#2592: Merged from branch to trunk

15:39 Changeset [15177] by bwerth

#2592 removed GUID from MOCMAEvolutionStrategy

15:31 Changeset [15176] by bwerth

#2592 formatting & removed unreferenced enum

14:32 Changeset [15175] by bwerth

#2592 fixed .csproj and typo in IIndicator

13:59 Changeset [15174] by abeham

#2762:

Added ExtremePointAlgorithm in form of a BasicAlgorithm
Removed implementation in view and put sorting/fit into the algorithm

12:35 Changeset [15173] by jkarder

Looks good, thanks!

#2736: minor formatting

07/09/17:

13:59 Changeset [15172] by abeham

#2736:

Implemented review comments
I had to restructure the parser to a greater extent because I found out that some instances defined nodes without edges (which I decided to filter)
I added a unit test that loads all instances
I also added export of instances

07/08/17:

12:31 Changeset [15171] by jkarder

#1853: worked on ParameterConfigurationEncoding

updated to .NET 4.5
replaced CreateExperimentDialogV2 with CreateExperimentView
improved experiment generation
fixed plugin dependencies and cleaned project references

07/07/17:

17:48 Ticket #2716 (Exception in RemoveOperationProgressFromContent) closed by gkronber

worksforme: No.

16:44 Changeset [15170] by gkronber

#2661: merged r14284:14286,r14288,r14296,r14298,r14408 from trunk to stable

14:12 Changeset [15169] by bwerth

#2699 made KernelParameter a ConstrainedValueParameter; added some description to BetaParameter

12:51 Changeset [15168] by abeham

#2696:

Added additional event handlers to detect change of problem instance data
Cleared best known solution if it cannot be evaluated anymore due to an exception, e.g. structural change
Cleared distance matrix in case coordinates change

10:07 Changeset [15167] by jkarder

#2739: improved 3d visualization

in UpdateVisualization, no materials are available after Clear, therefore TryGetValue is unnecessary
removed unnecessary ctrlDown field and OnKeyDown event handler

09:50 Changeset [15166] by jkarder

#2706: QAPSimilarityCalculator now throws an exception if both permutations are of length 0

09:42 Ticket #2650 (Support for categorical variables (R factors) for symbolic regression ...) closed by gkronber

done

09:41 Ticket #2779 (For model validation and inspection an analysis of residuals over ...) closed by gkronber

done

09:40 Ticket #2670 (Target Response Gradient charts should be renamed) closed by gkronber

done

09:40 Ticket #2686 (Support for time lags in constant optimizer) closed by gkronber

done

09:39 Ticket #2697 (Refactor certain parts for data-based modeling) closed by gkronber

done

09:39 Ticket #2690 (Implement views for decision tree models (random forest and gradient ...) closed by gkronber

done

09:39 Ticket #2760 (Shuffle samples in the cross-validation wrapper for data analysis ...) closed by gkronber

done

09:38 Ticket #2756 (GBT with logistic regression loss function cannot be used in ...) closed by gkronber

done

07/06/17:

17:58 Changeset [15165] by gkronber

#2782: fixed calculation of log pseudo-likelihood by adding the noise term to the covariance function

15:56 Changeset [15164] by bwerth

#2699 KRRModel: made helper functions static; made contets of "allowedInputVariables" immutable; made constructor private and added public "Create"-method that does most of the learning now;

Kernels: fixed inconsitency in error messages

15:03 Changeset [15163] by gkronber

#2782: changed calculation of LOO log pseudo likelihood (evaluation order)

14:42 Changeset [15162] by jkarder

#2730: improved equality comparers

got rid of one extra comparison
fixed RealVectorEqualityComparer

14:31 Changeset [15161] by gkronber

#2779: merged r14889,r14890,r14943,r15024,r15088,r15094 from trunk to stable

14:07 Changeset [15160] by gkronber

#2782 renamed LOO log predictive probability to LooCvNegativeLogPseudoLikelihood

13:56 Changeset [15159] by gkronber

#2723: merged r15013 and r15015 from trunk to stable

13:35 Changeset [15158] by bwerth

#2699 added checks for Beta == null and according exceptions

13:21 Changeset [15157] by gkronber

#2699: added events for BetaChanged and DistanceChanged

13:07 Changeset [15156] by gkronber

#2699: removed superfluous region names and empty AfterDeserialization hooks

12:57 Changeset [15155] by gkronber

#2699: deleted branch

12:55 Ticket #2800 (Hiding lots of runs in the BubbleChart should be faster) closed by gkronber

done

12:55 Changeset [15154] by gkronber

#2800: merged r15122 from trunk to stable

12:02 Changeset [15153] by gkronber

#745: temporarily removed glmnet project because of compilation fail of stable branch (#2634 needs to be merged to stable, then the glmnet project can be included again)

11:57 Changeset [15152] by gkronber

#2723: merged r14857 from trunk to stable

11:48 Changeset [15151] by gkronber

#745: merged r15139 from trunk to stable

11:39 Changeset [15150] by gkronber

#2760: merged r14864, r14865, r14904, r15002, r15026, r15077, r15111 from trunk to stable

11:37 Changeset [15149] by gkronber

#2756: merged r14781 from trunk to stable

11:31 Changeset [15148] by gkronber

#2650: merged r15053,r15054 from trunk to stable

11:26 Changeset [15147] by gkronber

#745: merged r15023,r15046 from trunk to stable

11:25 Changeset [15146] by gkronber

#745: merged r14846,14847,r14871 from trunk to stable

11:19 Changeset [15145] by gkronber

#2697: merged r14938,r14949,r14950 from trunk to stable

11:16 Changeset [15144] by gkronber

#2697: merged r14944, r14945, r14948

11:13 Changeset [15143] by gkronber

#2697: merged r14845, r14851, r14854

11:12 Changeset [15142] by gkronber

#2697: merged r14843 (resolving conflicts in csproj file for HL.Algorithms.DataAnalysis because MCTS has been removed)

11:08 Changeset [15141] by gkronber

#2697: merged r14840 from trunk to stable

11:06 Changeset [15140] by gkronber

#2697: merged r14507 from trunk to stable

11:01 Changeset [15139] by gkronber

#745 renamed project file for glmnet

10:51 Changeset [15138] by gkronber

#745 deleted branch

10:49 Changeset [15137] by gkronber

#2670: merged r14852 from trunk to stable

10:47 Changeset [15136] by gkronber

#2686: merged r14946 and r14951 from trunk to stable

10:44 Ticket #2581 (Monte Carlo Tree Search (MCTS) for symbolic regression models) closed by gkronber

obsolete

10:43 Changeset [15135] by jkarder

#2664: excluded HeuristicLab.Problems.BinPacking.Views-3.3 from mono builds

10:31 Changeset [15134] by gkronber

#2690: merged r14839,r15103:15106,r15123,r15124 from trunk to stable

10:26 Changeset [15133] by gkronber

#2651: merged r15085,r15112,r15113,r15129 from trunk to stable

10:22 Changeset [15132] by gkronber

#2650: merged r14827, r14829:14832 from trunk to stable

10:19 Changeset [15131] by gkronber

#2650: merged r14826 from trunk to stable. The only remaining conflict is DataTableControl and ScatterPlotControl which have been renamed within r14982 (-> tree conflict).

10:09 Changeset [15130] by gkronber

#2651: merged r14234,r14244:14247,r14250,r14256,r14257,r14272 from trunk to stable

10:07 Changeset [15129] by gkronber

#2651: renamed version file for igraph, copy version file to HeuristicLab application folder, include version file in plugin

09:51 Ticket #2787 (Opening a C# script on Windows10 causes a change of DPI settings ...) closed by gkronber

done

09:51 Changeset [15128] by gkronber

#2787: merged r15052 from trunk to stable

09:22 Changeset [15127] by gkronber

#2690: merged r14345, r14346, r14368 from trunk to stable

01:37 Changeset [15126] by abeham

#2634: fixed build

01:30 Changeset [15125] by abeham

#2634:

Improved performance slightly by using binary instead of linear search
Fixed target value ECDFs by removing aggregate option (only drawn for each budget separately)
Added utility class for calculating ECDFs in HeuristicLab.Common
Added option to hide labels
Improved add result methods