Gradient Boosted Trees

[gkronber]

r12329: created branch for GBT implementation

[gkronber]

r12332: initial import of gradient boosted trees for regression

[gkronber]

r12342: added cloning method override for previously abstract class RegressionSolution

[gkronber]

r12349: added serialization constructor for RegressionTreeModel

[gkronber]

r12371: fixed a small bug (correct mapping of row indices for training partition)

[gkronber]

r12372: implemented prototype view for gradient boosted trees

[gkronber]

r12373: added hidden alg.-parameter to disable solution creation (useful for cross-validation)

[gkronber]

r12374: added absolute and relative error loss functions for GBT.

[gkronber]

r12375: made TreeNodes structs instead of classes

[gkronber]

r12378: Merged revision(s) 12333-12365 from trunk/sources: #2373: Corrected typo in RandomBinaryVectorCreator by implementing an after-deserialization-hook.

........ #2359: Refactored pruning operators and analyzers.

........ #2359: Removed commented code from pruning analyzer.

........ #2378: Vertex.cs: Fixed bug in Label setter. ........ #2359: The changes in r12358 look fine to me. Added total number of pruned nodes in the analyzer's data table. Removed unused parameter names in the SymbolicDataAnalysisSingleObjectivePruningAnalyzer. ........ #2345: Fixed x-axis maximum in error characteristics curve.

........

[gkronber]

TODO:

• exception occurring for very large tree depths
• crash when the test set is empty
• node-queue instead of full expansion to max depth

[gkronber]

r12495: merged changes from trunk to branch

r12494 #2403: added a null check in the MatlabParameterVectorEvaluator to prevent exceptions when clearstate is called

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r12493 #2369: added support for squared errors and relative errors to error-characteristic-curve view

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r12492 #2392: implemented PearsonsRCalculator to fix incorrect correlation values in the correlation matrix.

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r12491 #2402 don't set task state to waiting when it fails

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r12490 #2401 added missing Mono.Cecil plugin dependency

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r12488 #2400 - Interfaces for Capaciated-, PickupAndDelivery- and TimeWindowed-ProblemInstances now specify an additional penalty parameter to set the current penalty factor for the constraint relaxation. - The setter of the penalty-property in ...

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r12485 #2374 made RegressionSolution and ClassificationSolution non-abstract

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r12482 #2320: Fixed warnings in unit test solutions introduced in r12420 by marking methods as obsolete.

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r12481 #2320: Fixed AfterDeserialization of GEArtifialAntEvaluator.

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r12480 #2320: Fixed error in symbolicexpressiontree crossover regarding the wiring of lookup parameters if persisted file is loaded.

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r12479 #2397 moved GeoIP project into ExtLibs

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r12478 #2329 fixed bug in simple code editor

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r12476 #2331 removed outdated plugins

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r12475 #2368 fixed compile warnings

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r12474 #2399 worked on Mono project prepare script

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r12473 #2329 added a simple code editor for Linux

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r12472 #2399 - fixed MathJax.js file name - worked on Mono project prepare script

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r12471 #2399 worked on Mono project prepare script

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r12470 #2399 fixed pre-build events in project files

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r12465 #2399 worked on mono project prepare script

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r12464 #2399 added patch to project

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r12463 #2399 fixed EPPlus so that it compiles on Linux

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r12461 #2398: Skip root and start symbols when calculating impacts and replacement values in the pruning operators.

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r12458 #2354 show label when no data is displayed and don't show the legend

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r12457 #2353 removed duplicated call to Any() in Hive Status page

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r12456 #2368 fixed modifier

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r12455 #2368 added support in persistence for typecaches in streams

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r12445 #2394: Changed Web.config compilation from debug to release to force script bundling. Changed history loading type from lazy to eager loading to increase performance. Fixed "getCoreStatus" typo in statusCtrl.js

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r12443 #2394: Fixed UserTaskQuery and GetStatusHistory in the WebApp.Status plugin

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r12442 #2394 added nuget folders to svn ignore list

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r12435 #2394: Improved PluginManager and updated hive status monitor.

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r12434 #2396 added symbolic expression tree formatter for C#

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r12433 #2395: Minor change in DoubleValue.GetValue.

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r12432 #2395 Use simple round-trip format for doubles because G17 prints some strange numbers (20.22 to 20.219999999999999999). Some accuracy can still be lost on 64bit machines, but should be very rare and minimal. double.MaxValue can still be pa...

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r12431 #2395 Fixed parsing issues by using the G17 format.

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r12430 #2394 added missing package config

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r12429 #2394 added missing package config

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r12428 #2394 added web app and status page to trunk

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r12424 #2320: Adapted plugin file and updated project file of SymbolicExpressionTreeEncoding.

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r12422 #2320: Merged the encoding class and all accompanying changes in the trunk.

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r12401 #2387 Fixed a bug where the automatic selection of the first element behaved differently for the NewItemDialog.

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r12400 #2387 Forgot to commit a file.

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r12399 #2387 - Added context-menu for expanding and collapsing tree-nodes. - Improve response time when expanding/collapsing all nodes for TypeSelector and NewItemDialog.

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r12398 #2387 - Added clearSearch-button in TypeSelector. - Adapted behavior of TypeSelector and NewItemDialog that a selected node stays selected as long as it matches the search criteria.

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r12397 #2387 - Adapted behavior of the matching in the TypeSelector that it behave the same as the NewItemDialog. The search string is tokenized by space and matches if all tokens are contained, (eg. "Sym Reg" matches "SymbolicRegression...")...

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r12393 #2025 - Removed Expand/CollapseAll buttons. - Removed cycling of items.

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r12392 #2386: Updated GetHashCode method in the EnumerableBoolEqualityComparer.

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[gkronber]

r12587: removed everything that is not necessary to review for trunk integration (including experimental views for gradient boosted trees)

[gkronber]

r12588: merged changes from trunk

[gkronber]

r12589: adapted interface to use IDataset instead of Dataset and added logistic regression loss function

[gkronber]

r12590: preparations for trunk integration (adapt to current trunk version, add license headers, add comments, improve code quality)

[gkronber]

r12591: fixed slow evaluation, even when results are already cached

[gkronber]

r12597: comments and minor improvements

[gkronber]

r12607: also use line search function for the initial estimation f0, changed logistic regression loss function to match description in GBM paper, comments and code improvements

[gkronber]

r12611: produce classification solution (discriminant function) when using logistic regression loss

[gkronber]

r12619: replace recursion by a stack to prepare for unbalanced tree expansion

[gkronber]

r12620: corrected check if a split is useful, added a unit test class and added an elaborate comment on split quality calculation

[gkronber]

r12623: comments

[gkronber]

r12632: implemented node expansion using a priority queue (and changed parameter MaxDepth to MaxSize). Moved unit tests to a separate project.

[gkronber]

r12635: marked potential future efficiency improvements as identified through profiling

[gkronber]

Only the branch "GBT-trunkintegration" has to be reviewed.

The following changesets have been applied only to GBT-trunkintegration: r12585 (create branch) r12587:12591 (remove everything unnecessary and adapt to current trunk version) r12597 r12607 r12611 r12619 r12620 r12623 r12632 r12635

[mkommend]

Reviewing comments

TODO

Lineasearch for logistic loss function GradientBoostedTreesAlgorithm GradientBoostedTreesAlgorithmStatic Finish RegressionTreeBuilder

What about weights for the linesearches in the loss functions? Either they are not supported or ignored~~

I guess it would be better to remove them completely. No big issue to add them later again. (r12696)

RegressionTreeModel.cs

• The tree should not be public accessible and modifyable (clone in default ctor, no shallow cloning) (r12658)

TreeNode

• Should be immutable (r12658)
• Should override equals (​MSDN link) (r12658 & r12663)

GradientBoostedTreesModel.cs

• Is line 66 really necessary? What about !rows.Any() return Enumerable.Empty<double>(); (r12660)

RegressionTreeBuilder.cs

• Why is it necessary to change y? As a result multiple calls to CreateRegressionTree and CreateRegressionTreeForGradientBoosting yield different, wrong results!!!
• Couldn't be the RegressionTreeBuilder be implemented as a stateless static class?
• The whole class is not thread-safe

  Yes. GradientBoostedTreesAlgorithmStatic is the stateless thread-safe facade for RegressionTreeBuilder RegressionTreeBuilder should be an internal class (r12661)

[gkronber]

r12696: killed all weights

[gkronber]

r12697: removed line search closure (binding y.ToArray(), and pred.ToArray())

[gkronber]

r12698: hiding internals of GbmState

[gkronber]

r12699: improved performance of evaluation for regression tree models

[gkronber]

Made some timings using the unit tests

Unit Test	iterations	before r12699	with column caching (r12699)	with column caching + no final solution
Tower & absolute error	1000	11.8s	9.6s	7.3s
Tower & relative error	3000	39.7s	33.8s	26.8s
Tower & squared error	5000	53.4s	43.8s	32.1s

[gkronber]

r12700: copied GBT implementation from branch to trunk

[mkommend]

Reviewed r12696, r12697, r12698 ,and r12699.

Please remove the branch before releasing this ticket.

[gkronber]

r12710: cached training and test rows in GBT for another speedup of ~1.5 (+renamed test class)

[gkronber]

r12711: merged r12700 and r12710 from trunk to stable

[gkronber]

r12712 and r12713 deleted old GBT branches