Opened 9 years ago

Closed 9 years ago

#1234 closed feature request (done)

Implement allele frequency analysis

Reported by: swagner Owned by: swagner
Priority: high Milestone: HeuristicLab 3.3.2
Component: Analysis Version: 3.3.2
Keywords: Cc:

Description


Change History (21)

comment:1 Changed 9 years ago by swagner

  • Status changed from new to accepted

comment:2 Changed 9 years ago by swagner

  • Summary changed from Implement allele analysis to Implement allele frequency analysis

comment:3 Changed 9 years ago by swagner

Added first version in r4623.

comment:4 Changed 9 years ago by swagner

Worked on in r4631.

comment:5 Changed 9 years ago by swagner

Worked on in r4639.

comment:6 Changed 9 years ago by swagner

Worked on in r4641.

Last edited 9 years ago by swagner (previous) (diff)

comment:7 Changed 9 years ago by swagner

Worked on in r4645.

comment:8 Changed 9 years ago by swagner

Worked on in r4704.

comment:9 Changed 9 years ago by swagner

Worked on in r4716.

comment:10 Changed 9 years ago by swagner

  • Owner changed from swagner to gkronber
  • Status changed from accepted to reviewing

comment:11 Changed 9 years ago by swagner

  • Milestone changed from HeuristicLab x.x.x to HeuristicLab 3.3.2

comment:12 follow-up: Changed 9 years ago by gkronber

TSPAlleleFrequencyAnalyzer produces many strings, this could be problematic.

comment:13 follow-up: Changed 9 years ago by gkronber

TSPAlleleFrequencyAnalyzer could make use of the distance matrix.

comment:14 Changed 9 years ago by gkronber

Reviewed classes AlleleFrequencyAnalyzer, TSPAlleleFrequencyAnalyzer, Allele, AlleleFrequencyCollection, AlleleFrequencyCollectionHistory, AlleleFrequencyView, AlleleFrequencyCollectionView, AlleleFrequencyCollectionHistoryView and MovieView and made some minor changes with r4849.

comment:15 Changed 9 years ago by gkronber

  • Owner changed from gkronber to swagner

Please review my changes and release the allele frequency analyzer classes.

comment:16 in reply to: ↑ 12 Changed 9 years ago by swagner

Replying to gkronber:

TSPAlleleFrequencyAnalyzer produces many strings, this could be problematic.

Yes, maybe. If it turns out to be a problem, this should be covered in a new ticket.

comment:17 Changed 9 years ago by swagner

  • Status changed from reviewing to assigned

comment:18 Changed 9 years ago by swagner

  • Status changed from assigned to accepted

comment:19 in reply to: ↑ 13 Changed 9 years ago by swagner

Replying to gkronber:

TSPAlleleFrequencyAnalyzer could make use of the distance matrix.

Adapted TSPAlleleFrequencyAnalyzer to use the distance matrix if available (r4866).

comment:20 Changed 9 years ago by swagner

  • Status changed from accepted to readytorelease

comment:21 Changed 9 years ago by swagner

  • Resolution set to done
  • Status changed from readytorelease to closed
  • Version changed from 3.3.1 to 3.3.2
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