Changeset 7669 for branches/HeuristicLab.Hive.Azure/HeuristicLab.Analysis

Timestamp:

03/28/12 15:47:26 (13 years ago)

Author:

spimming

Message:

#1680: merged changes from trunk into branch

Location:

branches/HeuristicLab.Hive.Azure

Files:

• . (modified) (2 props)
• HeuristicLab.Analysis (modified) (1 prop)
• HeuristicLab.Analysis/3.3/DataVisualization/DataRowVisualProperties.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/HeuristicLab.Analysis-3.3.csproj (modified) (1 diff)
• HeuristicLab.Analysis/3.3/MultidimensionalScaling/MultidimensionalScaling.cs (modified) (3 diffs)
• HeuristicLab.Analysis/3.3/Plugin.cs.frame (modified) (1 diff)
• HeuristicLab.Analysis/3.3/ValueAnalysis/MinAverageMaxValueAnalyzer.cs (modified) (2 diffs)

branches/HeuristicLab.Hive.Azure

@@ -3 +3 @@
 *.resharper
 *.suo
+*.user
 *.vsp
 Doxygen
+FxCopResults.txt
 Google.ProtocolBuffers-0.9.1.dll
 HeuristicLab 3.3.5.1.ReSharper.user

@@ -3 +3 @@
 *.resharper
 *.suo
+*.user
 *.vsp
 Doxygen
+FxCopResults.txt
 Google.ProtocolBuffers-0.9.1.dll
 HeuristicLab 3.3.5.1.ReSharper.user

branches/HeuristicLab.Hive.Azure/HeuristicLab.Analysis/3.3/DataVisualization/DataRowVisualProperties.cs

@@ -38 +38 @@
       Points,
       Bars,
-      Histogram
+      Histogram,
+      StepLine
     }
     #endregion

branches/HeuristicLab.Hive.Azure/HeuristicLab.Analysis/3.3/HeuristicLab.Analysis-3.3.csproj

@@ -99 +99 @@
   </PropertyGroup>
   <ItemGroup>
-    <Reference Include="ALGLIB-3.1.0, Version=3.1.0.0, Culture=neutral, PublicKeyToken=ba48961d6f65dcec, processorArchitecture=MSIL">
-      <HintPath>..\..\bin\ALGLIB-3.1.0.dll</HintPath>
+    <Reference Include="ALGLIB-3.4.0, Version=3.4.0.0, Culture=neutral, PublicKeyToken=ba48961d6f65dcec, processorArchitecture=MSIL">
+      <HintPath>..\..\bin\ALGLIB-3.4.0.dll</HintPath>
       <Private>False</Private>
     </Reference>

branches/HeuristicLab.Hive.Azure/HeuristicLab.Analysis/3.3/MultidimensionalScaling/MultidimensionalScaling.cs

@@ -103 +103 @@
     private static void StressFitness(double[] x, double[] fi, object obj) {
       Info info = (obj as Info);
+      int idx = 0;
       for (int i = 0; i < info.Coordinates.Rows; i++) {
-        double f = Stress(x, info.Dissimilarities[info.Row, i], info.Coordinates[i, 0], info.Coordinates[i, 1]);
-        if (i < info.Row) fi[i] = f;
-        else if (i > info.Row) fi[i - 1] = f;
+        if (i == info.Row) continue;
+        if (!double.IsNaN(info.Dissimilarities[info.Row, i]))
+          fi[idx++] = Stress(x, info.Dissimilarities[info.Row, i], info.Coordinates[i, 0], info.Coordinates[i, 1]);
+        else fi[idx++] = 0.0;
       }
     }
@@ -114 +116 @@
       int idx = 0;
       for (int i = 0; i < info.Coordinates.Rows; i++) {
-        if (i != info.Row) {
-          double c = info.Dissimilarities[info.Row, i];
-          double a = info.Coordinates[i, 0];
-          double b = info.Coordinates[i, 1];
-          double f = Stress(x, c, a, b);
-          fi[idx] = f;
+        if (i == info.Row) continue;
+        double c = info.Dissimilarities[info.Row, i];
+        double a = info.Coordinates[i, 0];
+        double b = info.Coordinates[i, 1];
+        if (!double.IsNaN(c)) {
+          fi[idx] = Stress(x, c, a, b); ;
           jac[idx, 0] = 2 * (x[0] - a) * (Math.Sqrt((a - x[0]) * (a - x[0]) + (b - x[1]) * (b - x[1])) - c) / Math.Sqrt((a - x[0]) * (a - x[0]) + (b - x[1]) * (b - x[1]));
           jac[idx, 1] = 2 * (x[1] - b) * (Math.Sqrt((a - x[0]) * (a - x[0]) + (b - x[1]) * (b - x[1])) - c) / Math.Sqrt((a - x[0]) * (a - x[0]) + (b - x[1]) * (b - x[1]));
-          idx++;
+        } else {
+          fi[idx] = jac[idx, 0] = jac[idx, 1] = 0;
         }
+        idx++;
       }
     }
@@ -153 +157 @@
       for (int i = 0; i < dimension - 1; i++) {
         for (int j = i + 1; j < dimension; j++) {
-          if (dissimilarities[i, j] != dissimilarities[j, i]) throw new ArgumentException("Dissimilarities is not a symmetric matrix.", "dissimilarities");
-          if (dissimilarities[i, j] != 0) {
+          if (dissimilarities[i, j] != dissimilarities[j, i] && !(double.IsNaN(dissimilarities[i, j]) && double.IsNaN(dissimilarities[j, i])))
+            throw new ArgumentException("Dissimilarities is not a symmetric matrix.", "dissimilarities");
+          if (!double.IsNaN(dissimilarities[i, j])) {
             stress += Stress(coordinates[i, 0], coordinates[i, 1], dissimilarities[i, j], coordinates[j, 0], coordinates[j, 1]);
             normalization += (dissimilarities[i, j] * dissimilarities[i, j]);

branches/HeuristicLab.Hive.Azure/HeuristicLab.Analysis/3.3/Plugin.cs.frame

@@ -28 +28 @@
   [Plugin("HeuristicLab.Analysis", "3.3.6.$WCREV$")]
   [PluginFile("HeuristicLab.Analysis-3.3.dll", PluginFileType.Assembly)]
-  [PluginDependency("HeuristicLab.ALGLIB", "3.1")]
+  [PluginDependency("HeuristicLab.ALGLIB", "3.4")]
   [PluginDependency("HeuristicLab.Collections", "3.3")]
   [PluginDependency("HeuristicLab.Common", "3.3")]

branches/HeuristicLab.Hive.Azure/HeuristicLab.Analysis/3.3/ValueAnalysis/MinAverageMaxValueAnalyzer.cs

@@ -94 +94 @@
       : base(original, cloner) {
       resultsCollector = cloner.Clone(original.resultsCollector);
-      Initialize();
+      RegisterEventHandlers();
     }
     public override IDeepCloneable Clone(Cloner cloner) {
@@ -147 +147 @@
       #endregion
 
-      Initialize();
+      RegisterEventHandlers();
     }
 
     [StorableHook(HookType.AfterDeserialization)]
-    private void Initialize() {
+    private void AfterDeserialization() {
+      RegisterEventHandlers();
+    }
+
+    private void RegisterEventHandlers() {
       ValueParameter.DepthChanged += new EventHandler(ValueParameter_DepthChanged);
       CollectMinValueInResultsParameter.ValueChanged += new EventHandler(CollectMinValueInResultsParameter_ValueChanged);

@@ -3 +3 @@
 *.resharper
 *.suo
+*.user
 *.vsp
 Doxygen
+FxCopResults.txt
 Google.ProtocolBuffers-0.9.1.dll
 HeuristicLab 3.3.5.1.ReSharper.user