Changeset 6760 for branches/PersistenceSpeedUp/HeuristicLab.Analysis

Timestamp:

09/14/11 13:59:25 (13 years ago)

Author:

epitzer

Message:

#1530 integrate changes from trunk

Location:

branches/PersistenceSpeedUp

Files:

• . (modified) (2 props)
• HeuristicLab.Analysis (modified) (1 prop)
• HeuristicLab.Analysis/3.3/DataVisualization/DataRow.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/DataVisualization/DataRowVisualProperties.cs (modified) (9 diffs)
• HeuristicLab.Analysis/3.3/DataVisualization/DataTableVisualProperties.cs (modified) (8 diffs)
• HeuristicLab.Analysis/3.3/HeuristicLab.Analysis-3.3.csproj (modified) (1 diff)
• HeuristicLab.Analysis/3.3/HeuristicLabAnalysisPlugin.cs.frame (modified) (1 diff)
• HeuristicLab.Analysis/3.3/MultidimensionalScaling/MultidimensionalScaling.cs (modified) (4 diffs)
• HeuristicLab.Analysis/3.3/Properties/AssemblyInfo.frame (modified) (1 diff)
• HeuristicLab.Analysis/3.3/QualityAnalysis/QualityDistributionAnalyzer.cs (copied) (copied from trunk/sources/HeuristicLab.Analysis/3.3/QualityAnalysis/QualityDistributionAnalyzer.cs)
• HeuristicLab.Analysis/3.3/QualityAnalysis/ScaledQualityDifferenceAnalyzer.cs (copied) (copied from trunk/sources/HeuristicLab.Analysis/3.3/QualityAnalysis/ScaledQualityDifferenceAnalyzer.cs)
• HeuristicLab.Analysis/3.3/Tests/MultidimensionalScalingTest.cs (modified) (2 diffs)

branches/PersistenceSpeedUp

@@ -12 +12 @@
 *.psess
 *.vsp
+*.docstates

@@ -12 +12 @@
 *.psess
 *.vsp
+*.docstates

branches/PersistenceSpeedUp/HeuristicLab.Analysis/3.3/DataVisualization/DataRow.cs

@@ -83 +83 @@
     public DataRow(string name)
       : base(name) {
-      VisualProperties = new DataRowVisualProperties();
+      VisualProperties = new DataRowVisualProperties(name);
       values = new ObservableList<double>();
     }
     public DataRow(string name, string description)
       : base(name, description) {
-      VisualProperties = new DataRowVisualProperties();
+      VisualProperties = new DataRowVisualProperties(name);
       values = new ObservableList<double>();
     }
     public DataRow(string name, string description, IEnumerable<double> values)
       : base(name, description) {
-      VisualProperties = new DataRowVisualProperties();
+      VisualProperties = new DataRowVisualProperties(name);
       this.values = new ObservableList<double>(values);
     }

branches/PersistenceSpeedUp/HeuristicLab.Analysis/3.3/DataVisualization/DataRowVisualProperties.cs

@@ -20 +20 @@
 #endregion
 
+using System;
 using System.ComponentModel;
 using System.Drawing;
@@ -36 +37 @@
       Columns,
       Points,
-      Bars
+      Bars,
+      Histogram
+    }
+    #endregion
+    #region LineStyle
+    public enum DataRowLineStyle {
+      Dash,
+      DashDot,
+      DashDotDot,
+      Dot,
+      NotSet,
+      Solid
     }
     #endregion
@@ -60 +72 @@
       }
     }
+    private bool secondXAxis;
+    public bool SecondXAxis {
+      get { return secondXAxis; }
+      set {
+        if (secondXAxis != value) {
+          secondXAxis = value;
+          OnPropertyChanged("SecondXAxis");
+        }
+      }
+    }
     private Color color;
     public Color Color {
@@ -70 +92 @@
       }
     }
+    private DataRowLineStyle lineStyle;
+    public DataRowLineStyle LineStyle {
+      get { return lineStyle; }
+      set {
+        if (lineStyle != value) {
+          lineStyle = value;
+          OnPropertyChanged("LineStyle");
+        }
+      }
+    }
     private bool startIndexZero;
     public bool StartIndexZero {
@@ -77 +109 @@
           startIndexZero = value;
           OnPropertyChanged("StartIndexZero");
+        }
+      }
+    }
+    private int lineWidth;
+    public int LineWidth {
+      get { return lineWidth; }
+      set {
+        if (lineWidth != value) {
+          lineWidth = value;
+          OnPropertyChanged("LineWidth");
+        }
+      }
+    }
+    private int bins;
+    public int Bins {
+      get { return bins; }
+      set {
+        if (bins != value) {
+          bins = value;
+          OnPropertyChanged("Bins");
+        }
+      }
+    }
+    private bool exactBins;
+    public bool ExactBins {
+      get { return exactBins; }
+      set {
+        if (exactBins != value) {
+          exactBins = value;
+          OnPropertyChanged("ExactBins");
+        }
+      }
+    }
+    private string displayName;
+    public string DisplayName {
+      get { return displayName == null ? String.Empty : displayName; }
+      set {
+        if (displayName != value) {
+          if (value == null && displayName != String.Empty) {
+            displayName = String.Empty;
+            OnPropertyChanged("DisplayName");
+          } else if (value != null) {
+            displayName = value;
+            OnPropertyChanged("DisplayName");
+          }
         }
       }
@@ -92 +169 @@
       set { secondYAxis = value; }
     }
+    [Storable(Name = "SecondXAxis")]
+    private bool StorableSecondXAxis {
+      get { return secondXAxis; }
+      set { secondXAxis = value; }
+    }
     [Storable(Name = "Color")]
     private Color StorableColor {
@@ -97 +179 @@
       set { color = value; }
     }
+    [Storable(Name = "LineStyle")]
+    private DataRowLineStyle StorableLineStyle {
+      get { return lineStyle; }
+      set { lineStyle = value; }
+    }
     [Storable(Name = "StartIndexZero")]
     private bool StorableStartIndexZero {
       get { return startIndexZero; }
       set { startIndexZero = value; }
+    }
+    [Storable(Name = "LineWidth")]
+    private int StorableLineWidth {
+      get { return lineWidth; }
+      set { lineWidth = value; }
+    }
+    [Storable(Name = "Bins")]
+    private int StorableBins {
+      get { return bins; }
+      set { bins = value; }
+    }
+    [Storable(Name = "ExactBins")]
+    private bool StorableExactBins {
+      get { return exactBins; }
+      set { exactBins = value; }
+    }
+    [Storable(Name = "DisplayName")]
+    private string StorableDisplayName {
+      get { return displayName; }
+      set { displayName = value; }
     }
     #endregion
@@ -110 +217 @@
       this.chartType = original.chartType;
       this.secondYAxis = original.secondYAxis;
+      this.secondXAxis = original.secondXAxis;
       this.color = original.color;
+      this.lineStyle = original.lineStyle;
       this.startIndexZero = original.startIndexZero;
+      this.lineWidth = original.lineWidth;
+      this.bins = original.bins;
+      this.exactBins = original.exactBins;
+      this.displayName = original.displayName;
     }
     public DataRowVisualProperties() {
       chartType = DataRowChartType.Line;
       secondYAxis = false;
+      secondXAxis = false;
       color = Color.Empty;
+      lineStyle = DataRowLineStyle.Solid;
       startIndexZero = false;
+      lineWidth = 1;
+      bins = 10;
+      exactBins = false;
+      displayName = String.Empty;
+    }
+    public DataRowVisualProperties(string displayName)
+      : this() {
+      this.displayName = displayName;
     }
 
@@ -129 +252 @@
       if (handler != null) handler(this, new PropertyChangedEventArgs(propertyName));
     }
+
+    [StorableHook(HookType.AfterDeserialization)]
+    private void AfterDeserialization() {
+      // BackwardsCompatibility3.3
+      #region Backwards compatible code, remove with 3.4
+      if (secondXAxis == default(bool)
+        && lineStyle == default(DataRowLineStyle)
+        && lineWidth == default(int) && bins == default(int) && exactBins == default(bool)
+        && displayName == default(string)) {
+        secondXAxis = false;
+        lineStyle = DataRowLineStyle.Solid;
+        lineWidth = 1;
+        bins = 10;
+        exactBins = false;
+        displayName = String.Empty;
+      }
+      #endregion
+    }
   }
 }

branches/PersistenceSpeedUp/HeuristicLab.Analysis/3.3/DataVisualization/DataTableVisualProperties.cs

@@ -21 +21 @@
 
 using System.ComponentModel;
+using System.Drawing;
 using HeuristicLab.Common;
 using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
@@ -30 +31 @@
   [StorableClass]
   public class DataTableVisualProperties : DeepCloneable, INotifyPropertyChanged {
+    private Font titleFont;
+    public Font TitleFont {
+      get { return titleFont; }
+      set {
+        if (titleFont == null || value == null
+          || titleFont.Name != value.Name || titleFont.Size != value.Size || titleFont.Style != value.Style) {
+          titleFont = value;
+          OnPropertyChanged("TitleFont");
+        }
+      }
+    }
+    private Color titleColor;
+    public Color TitleColor {
+      get { return titleColor; }
+      set {
+        if (titleColor != value) {
+          titleColor = value;
+          OnPropertyChanged("TitleFontColor");
+        }
+      }
+    }
+    private Font axisTitleFont;
+    public Font AxisTitleFont {
+      get { return axisTitleFont; }
+      set {
+        if (axisTitleFont == null || axisTitleFont == null
+          || axisTitleFont.Name != value.Name || axisTitleFont.Size != value.Size || axisTitleFont.Style != value.Style) {
+          axisTitleFont = value;
+          OnPropertyChanged("AxisTitleFont");
+        }
+      }
+    }
+    private Color axisTitleColor;
+    public Color AxisTitleColor {
+      get { return axisTitleColor; }
+      set {
+        if (axisTitleColor != value) {
+          axisTitleColor = value;
+          OnPropertyChanged("AxisTitleColor");
+        }
+      }
+    }
     private string xAxisTitle;
     public string XAxisTitle {
@@ -54 +97 @@
     }
 
+    private string secondXAxisTitle;
+    public string SecondXAxisTitle {
+      get { return secondXAxisTitle; }
+      set {
+        if (value == null) value = string.Empty;
+        if (secondXAxisTitle != value) {
+          secondXAxisTitle = value;
+          OnPropertyChanged("SecondXAxisTitle");
+        }
+      }
+    }
+
     private string secondYAxisTitle;
     public string SecondYAxisTitle {
@@ -66 +121 @@
     }
 
+    private bool xAxisMinimumAuto;
+    public bool XAxisMinimumAuto {
+      get { return xAxisMinimumAuto; }
+      set {
+        if (xAxisMinimumAuto != value) {
+          xAxisMinimumAuto = value;
+          if (value) xAxisMinimumFixedValue = double.NaN;
+          OnPropertyChanged("XAxisMinimumAuto");
+        }
+      }
+    }
+
+    private bool xAxisMaximumAuto;
+    public bool XAxisMaximumAuto {
+      get { return xAxisMaximumAuto; }
+      set {
+        if (xAxisMaximumAuto != value) {
+          xAxisMaximumAuto = value;
+          if (value) xAxisMaximumFixedValue = double.NaN;
+          OnPropertyChanged("XAxisMaximumAuto");
+        }
+      }
+    }
+
+    private double xAxisMinimumFixedValue;
+    public double XAxisMinimumFixedValue {
+      get { return xAxisMinimumFixedValue; }
+      set {
+        if (xAxisMinimumFixedValue != value) {
+          xAxisMinimumFixedValue = value;
+          OnPropertyChanged("XAxisMinimumFixedValue");
+        }
+      }
+    }
+
+    private double xAxisMaximumFixedValue;
+    public double XAxisMaximumFixedValue {
+      get { return xAxisMaximumFixedValue; }
+      set {
+        if (xAxisMaximumFixedValue != value) {
+          xAxisMaximumFixedValue = value;
+          OnPropertyChanged("XAxisMaximumFixedValue");
+        }
+      }
+    }
+
+    private bool secondXAxisMinimumAuto;
+    public bool SecondXAxisMinimumAuto {
+      get { return secondXAxisMinimumAuto; }
+      set {
+        if (secondXAxisMinimumAuto != value) {
+          secondXAxisMinimumAuto = value;
+          if (value) secondXAxisMinimumFixedValue = double.NaN;
+          OnPropertyChanged("SecondXAxisMinimumAuto");
+        }
+      }
+    }
+
+    private bool secondXAxisMaximumAuto;
+    public bool SecondXAxisMaximumAuto {
+      get { return secondXAxisMaximumAuto; }
+      set {
+        if (secondXAxisMaximumAuto != value) {
+          secondXAxisMaximumAuto = value;
+          if (value) secondXAxisMaximumFixedValue = double.NaN;
+          OnPropertyChanged("SecondXAxisMaximumAuto");
+        }
+      }
+    }
+
+    private double secondXAxisMinimumFixedValue;
+    public double SecondXAxisMinimumFixedValue {
+      get { return secondXAxisMinimumFixedValue; }
+      set {
+        if (secondXAxisMinimumFixedValue != value) {
+          secondXAxisMinimumFixedValue = value;
+          OnPropertyChanged("SecondXAxisMinimumFixedValue");
+        }
+      }
+    }
+
+    private double secondXAxisMaximumFixedValue;
+    public double SecondXAxisMaximumFixedValue {
+      get { return secondXAxisMaximumFixedValue; }
+      set {
+        if (secondXAxisMaximumFixedValue != value) {
+          secondXAxisMaximumFixedValue = value;
+          OnPropertyChanged("SecondXAxisMaximumFixedValue");
+        }
+      }
+    }
+
+    private bool yAxisMinimumAuto;
+    public bool YAxisMinimumAuto {
+      get { return yAxisMinimumAuto; }
+      set {
+        if (yAxisMinimumAuto != value) {
+          yAxisMinimumAuto = value;
+          if (value) yAxisMinimumFixedValue = double.NaN;
+          OnPropertyChanged("YAxisMinimumAuto");
+        }
+      }
+    }
+
+    private bool yAxisMaximumAuto;
+    public bool YAxisMaximumAuto {
+      get { return yAxisMaximumAuto; }
+      set {
+        if (yAxisMaximumAuto != value) {
+          yAxisMaximumAuto = value;
+          if (value) yAxisMaximumFixedValue = double.NaN;
+          OnPropertyChanged("YAxisMaximumAuto");
+        }
+      }
+    }
+
+    private double yAxisMinimumFixedValue;
+    public double YAxisMinimumFixedValue {
+      get { return yAxisMinimumFixedValue; }
+      set {
+        if (yAxisMinimumFixedValue != value) {
+          yAxisMinimumFixedValue = value;
+          OnPropertyChanged("YAxisMinimumFixedValue");
+        }
+      }
+    }
+
+    private double yAxisMaximumFixedValue;
+    public double YAxisMaximumFixedValue {
+      get { return yAxisMaximumFixedValue; }
+      set {
+        if (yAxisMaximumFixedValue != value) {
+          yAxisMaximumFixedValue = value;
+          OnPropertyChanged("YAxisMaximumFixedValue");
+        }
+      }
+    }
+
+    private bool secondYAxisMinimumAuto;
+    public bool SecondYAxisMinimumAuto {
+      get { return secondYAxisMinimumAuto; }
+      set {
+        if (secondYAxisMinimumAuto != value) {
+          secondYAxisMinimumAuto = value;
+          if (value) secondYAxisMinimumFixedValue = double.NaN;
+          OnPropertyChanged("SecondYAxisMinimumAuto");
+        }
+      }
+    }
+
+    private bool secondYAxisMaximumAuto;
+    public bool SecondYAxisMaximumAuto {
+      get { return secondYAxisMaximumAuto; }
+      set {
+        if (secondYAxisMaximumAuto != value) {
+          secondYAxisMaximumAuto = value;
+          if (value) secondYAxisMaximumFixedValue = double.NaN;
+          OnPropertyChanged("SecondYAxisMaximumAuto");
+        }
+      }
+    }
+
+    private double secondYAxisMinimumFixedValue;
+    public double SecondYAxisMinimumFixedValue {
+      get { return secondYAxisMinimumFixedValue; }
+      set {
+        if (secondYAxisMinimumFixedValue != value) {
+          secondYAxisMinimumFixedValue = value;
+          OnPropertyChanged("SecondYAxisMinimumFixedValue");
+        }
+      }
+    }
+
+    private double secondYAxisMaximumFixedValue;
+    public double SecondYAxisMaximumFixedValue {
+      get { return secondYAxisMaximumFixedValue; }
+      set {
+        if (secondYAxisMaximumFixedValue != value) {
+          secondYAxisMaximumFixedValue = value;
+          OnPropertyChanged("SecondYAxisMaximumFixedValue");
+        }
+      }
+    }
+
     #region Persistence Properties
+    [Storable(Name = "TitleFont")]
+    private Font StorableTitleFont {
+      get { return titleFont; }
+      set { titleFont = value; }
+    }
+    [Storable(Name = "TitleColor")]
+    private Color StorableTitleColor {
+      get { return titleColor; }
+      set { titleColor = value; }
+    }
+    [Storable(Name = "AxisTitleFont")]
+    private Font StorableAxisTitleFont {
+      get { return axisTitleFont; }
+      set { axisTitleFont = value; }
+    }
+    [Storable(Name = "AxisTitleColor")]
+    private Color StorableAxisTitleColor {
+      get { return axisTitleColor; }
+      set { axisTitleColor = value; }
+    }
     [Storable(Name = "XAxisTitle")]
     private string StorableXAxisTitle {
@@ -77 +336 @@
       set { yAxisTitle = value; }
     }
+    [Storable(Name = "SecondXAxisTitle")]
+    private string StorableSecondXAxisTitle {
+      get { return secondXAxisTitle; }
+      set { secondXAxisTitle = value; }
+    }
     [Storable(Name = "SecondYAxisTitle")]
     private string StorableSecondYAxisTitle {
@@ -82 +346 @@
       set { secondYAxisTitle = value; }
     }
+    [Storable(Name = "XAxisMinimumAuto")]
+    private bool StorableXAxisMinimumAuto {
+      get { return xAxisMinimumAuto; }
+      set { xAxisMinimumAuto = value; }
+    }
+    [Storable(Name = "XAxisMaximumAuto")]
+    private bool StorableXAxisMaximumAuto {
+      get { return xAxisMaximumAuto; }
+      set { xAxisMaximumAuto = value; }
+    }
+    [Storable(Name = "XAxisMinimumFixedValue")]
+    private double StorableXAxisMinimumFixedValue {
+      get { return xAxisMinimumFixedValue; }
+      set { xAxisMinimumFixedValue = value; }
+    }
+    [Storable(Name = "XAxisMaximumFixedValue")]
+    private double StorableXAxisMaximumFixedValue {
+      get { return xAxisMaximumFixedValue; }
+      set { xAxisMaximumFixedValue = value; }
+    }
+    [Storable(Name = "SecondXAxisMinimumAuto")]
+    private bool StorableSecondXAxisMinimumAuto {
+      get { return secondXAxisMinimumAuto; }
+      set { secondXAxisMinimumAuto = value; }
+    }
+    [Storable(Name = "SecondXAxisMaximumAuto")]
+    private bool StorableSecondXAxisMaximumAuto {
+      get { return secondXAxisMaximumAuto; }
+      set { secondXAxisMaximumAuto = value; }
+    }
+    [Storable(Name = "SecondXAxisMinimumFixedValue")]
+    private double StorableSecondXAxisMinimumFixedValue {
+      get { return secondXAxisMinimumFixedValue; }
+      set { secondXAxisMinimumFixedValue = value; }
+    }
+    [Storable(Name = "SecondXAxisMaximumFixedValue")]
+    private double StorableSecondXAxisMaximumFixedValue {
+      get { return secondXAxisMaximumFixedValue; }
+      set { secondXAxisMaximumFixedValue = value; }
+    }
+    [Storable(Name = "YAxisMinimumAuto")]
+    private bool StorableYAxisMinimumAuto {
+      get { return yAxisMinimumAuto; }
+      set { yAxisMinimumAuto = value; }
+    }
+    [Storable(Name = "YAxisMaximumAuto")]
+    private bool StorableYAxisMaximumAuto {
+      get { return yAxisMaximumAuto; }
+      set { yAxisMaximumAuto = value; }
+    }
+    [Storable(Name = "YAxisMinimumFixedValue")]
+    private double StorableYAxisMinimumFixedValue {
+      get { return yAxisMinimumFixedValue; }
+      set { yAxisMinimumFixedValue = value; }
+    }
+    [Storable(Name = "YAxisMaximumFixedValue")]
+    private double StorableYAxisMaximumFixedValue {
+      get { return yAxisMaximumFixedValue; }
+      set { yAxisMaximumFixedValue = value; }
+    }
+    [Storable(Name = "SecondYAxisMinimumAuto")]
+    private bool StorableSecondYAxisMinimumAuto {
+      get { return secondYAxisMinimumAuto; }
+      set { secondYAxisMinimumAuto = value; }
+    }
+    [Storable(Name = "SecondYAxisMaximumAuto")]
+    private bool StorableSecondYAxisMaximumAuto {
+      get { return secondYAxisMaximumAuto; }
+      set { secondYAxisMaximumAuto = value; }
+    }
+    [Storable(Name = "SecondYAxisMinimumFixedValue")]
+    private double StorableSecondYAxisMinimumFixedValue {
+      get { return secondYAxisMinimumFixedValue; }
+      set { secondYAxisMinimumFixedValue = value; }
+    }
+    [Storable(Name = "SecondYAxisMaximumFixedValue")]
+    private double StorableSecondYAxisMaximumFixedValue {
+      get { return secondYAxisMaximumFixedValue; }
+      set { secondYAxisMaximumFixedValue = value; }
+    }
     #endregion
 
@@ -88 +432 @@
     protected DataTableVisualProperties(DataTableVisualProperties original, Cloner cloner)
       : base(original, cloner) {
+      if (original.titleFont != null)
+        this.titleFont = (Font)original.titleFont.Clone();
+      if (original.axisTitleFont != null)
+        this.axisTitleFont = (Font)original.axisTitleFont.Clone();
       this.xAxisTitle = original.xAxisTitle;
       this.yAxisTitle = original.yAxisTitle;
+      this.secondXAxisTitle = original.secondXAxisTitle;
       this.secondYAxisTitle = original.secondYAxisTitle;
+      this.xAxisMinimumAuto = original.xAxisMinimumAuto;
+      this.xAxisMinimumFixedValue = original.xAxisMinimumFixedValue;
+      this.xAxisMaximumAuto = original.xAxisMaximumAuto;
+      this.xAxisMaximumFixedValue = original.xAxisMaximumFixedValue;
+      this.secondXAxisMinimumAuto = original.secondXAxisMinimumAuto;
+      this.secondXAxisMinimumFixedValue = original.secondXAxisMinimumFixedValue;
+      this.secondXAxisMaximumAuto = original.secondXAxisMaximumAuto;
+      this.secondXAxisMaximumFixedValue = original.secondXAxisMaximumFixedValue;
+      this.yAxisMinimumAuto = original.yAxisMinimumAuto;
+      this.yAxisMinimumFixedValue = original.yAxisMinimumFixedValue;
+      this.yAxisMaximumAuto = original.yAxisMaximumAuto;
+      this.yAxisMaximumFixedValue = original.yAxisMaximumFixedValue;
+      this.secondYAxisMinimumAuto = original.secondYAxisMinimumAuto;
+      this.secondYAxisMinimumFixedValue = original.secondYAxisMinimumFixedValue;
+      this.secondYAxisMaximumAuto = original.secondYAxisMaximumAuto;
+      this.secondYAxisMaximumFixedValue = original.secondYAxisMaximumFixedValue;
     }
     public DataTableVisualProperties() {
+      titleColor = Color.Black;
+      axisTitleColor = Color.Black;
       this.xAxisTitle = string.Empty;
       this.yAxisTitle = string.Empty;
+      this.secondXAxisTitle = string.Empty;
       this.secondYAxisTitle = string.Empty;
+      this.xAxisMinimumAuto = true;
+      this.xAxisMinimumFixedValue = double.NaN;
+      this.xAxisMaximumAuto = true;
+      this.xAxisMaximumFixedValue = double.NaN;
+      this.secondXAxisMinimumAuto = true;
+      this.secondXAxisMinimumFixedValue = double.NaN;
+      this.secondXAxisMaximumAuto = true;
+      this.secondXAxisMaximumFixedValue = double.NaN;
+      this.yAxisMinimumAuto = true;
+      this.yAxisMinimumFixedValue = double.NaN;
+      this.yAxisMaximumAuto = true;
+      this.yAxisMaximumFixedValue = double.NaN;
+      this.secondYAxisMinimumAuto = true;
+      this.secondYAxisMinimumFixedValue = double.NaN;
+      this.secondYAxisMaximumAuto = true;
+      this.secondYAxisMaximumFixedValue = double.NaN;
     }
 
@@ -107 +491 @@
       if (handler != null) handler(this, new PropertyChangedEventArgs(propertyName));
     }
+
+    [StorableHook(HookType.AfterDeserialization)]
+    private void AfterDeserialization() {
+      // BackwardsCompatibility3.3
+      #region Backwards compatible code, remove with 3.4
+      // check if most of the properties that were added in Mai'11 were set to their default values, then we want to reset them to our default values
+      if (xAxisMinimumAuto == default(bool) && xAxisMaximumAuto == default(bool)
+        && yAxisMinimumAuto == default(bool) && yAxisMaximumAuto == default(bool)
+        && secondXAxisMinimumAuto == default(bool) && secondXAxisMaximumAuto == default(bool)
+        && secondYAxisMinimumAuto == default(bool) && secondYAxisMaximumAuto == default(bool)
+        && titleColor == default(Color) && axisTitleColor == default(Color)
+        && secondXAxisTitle == default(string)
+        && xAxisMinimumFixedValue == default(double) && xAxisMaximumFixedValue == default(double)
+        && yAxisMinimumFixedValue == default(double) && yAxisMaximumFixedValue == default(double)
+        && secondXAxisMinimumFixedValue == default(double) && secondXAxisMaximumFixedValue == default(double)
+        && secondYAxisMinimumFixedValue == default(double) && secondYAxisMaximumFixedValue == default(double)) {
+        titleColor = Color.Black;
+        axisTitleColor = Color.Black;
+        this.secondXAxisTitle = string.Empty;
+        this.xAxisMinimumAuto = true;
+        this.xAxisMinimumFixedValue = double.NaN;
+        this.xAxisMaximumAuto = true;
+        this.xAxisMaximumFixedValue = double.NaN;
+        this.secondXAxisMinimumAuto = true;
+        this.secondXAxisMinimumFixedValue = double.NaN;
+        this.secondXAxisMaximumAuto = true;
+        this.secondXAxisMaximumFixedValue = double.NaN;
+        this.yAxisMinimumAuto = true;
+        this.yAxisMinimumFixedValue = double.NaN;
+        this.yAxisMaximumAuto = true;
+        this.yAxisMaximumFixedValue = double.NaN;
+        this.secondYAxisMinimumAuto = true;
+        this.secondYAxisMinimumFixedValue = double.NaN;
+        this.secondYAxisMaximumAuto = true;
+        this.secondYAxisMaximumFixedValue = double.NaN;
+      #endregion
+      }
+    }
   }
 }

branches/PersistenceSpeedUp/HeuristicLab.Analysis/3.3/HeuristicLab.Analysis-3.3.csproj

@@ -138 +138 @@
     <Compile Include="HeuristicLabAnalysisPlugin.cs" />
     <Compile Include="Properties\AssemblyInfo.cs" />
+    <Compile Include="QualityAnalysis\QualityDistributionAnalyzer.cs" />
+    <Compile Include="QualityAnalysis\ScaledQualityDifferenceAnalyzer.cs" />
     <Compile Include="ValueAnalysis\MinAverageMaxValueAnalyzer.cs" />
     <Compile Include="ValueAnalysis\MinAverageMaxValueCalculator.cs" />

branches/PersistenceSpeedUp/HeuristicLab.Analysis/3.3/HeuristicLabAnalysisPlugin.cs.frame

@@ -26 +26 @@
   /// Plugin class for HeuristicLab.Analysis plugin.
   /// </summary>
-  [Plugin("HeuristicLab.Analysis", "3.3.4.$WCREV$")]
+  [Plugin("HeuristicLab.Analysis", "3.3.5.$WCREV$")]
   [PluginFile("HeuristicLab.Analysis-3.3.dll", PluginFileType.Assembly)]
   [PluginDependency("HeuristicLab.ALGLIB", "3.1")]

branches/PersistenceSpeedUp/HeuristicLab.Analysis/3.3/MultidimensionalScaling/MultidimensionalScaling.cs

@@ -68 +68 @@
     /// In every iteration it tries to find the best location for every item.</param>
     /// <returns>A Nx2 matrix where the first column represents the x- and the second column the y coordinates.</returns>
-    public static DoubleMatrix KruskalShepard(DoubleMatrix dissimilarities, DoubleMatrix coordinates, int maximumIterations = 20) {
+    public static DoubleMatrix KruskalShepard(DoubleMatrix dissimilarities, DoubleMatrix coordinates, int maximumIterations = 10) {
       int dimension = dissimilarities.Rows;
       if (dimension != dissimilarities.Columns || coordinates.Rows != dimension) throw new ArgumentException("The number of coordinates and the number of rows and columns in the dissimilarities matrix do not match.");
@@ -75 +75 @@
       double epsf = 0;
       double epsx = 0;
-      int maxits = 100;
-      alglib.mincgstate state = null;
-      alglib.mincgreport rep;
+      int maxits = 0;
 
+      alglib.minlmstate state;
+      alglib.minlmreport rep;
       for (int iterations = 0; iterations < maximumIterations; iterations++) {
         bool changed = false;
@@ -85 +85 @@
 
           try {
-            if ((iterations == 0 && i == 0)) {
-              alglib.mincgcreate(c, out state);
-              alglib.mincgsetcond(state, epsg, epsf, epsx, maxits);
-            } else {
-              alglib.mincgrestartfrom(state, c);
-            }
-            alglib.mincgoptimize(state, StressGradient, null, new Info(coordinates, dissimilarities, i));
-            alglib.mincgresults(state, out c, out rep);
+            alglib.minlmcreatevj(dimension - 1, c, out state);
+            alglib.minlmsetcond(state, epsg, epsf, epsx, maxits);
+            alglib.minlmoptimize(state, StressFitness, StressJacobian, null, new Info(coordinates, dissimilarities, i));
+            alglib.minlmresults(state, out c, out rep);
           } catch (alglib.alglibexception) { }
           if (!double.IsNaN(c[0]) && !double.IsNaN(c[1])) {
@@ -105 +101 @@
     }
 
-    // computes the function and the gradient of the raw stress function.
-    private static void StressGradient(double[] x, ref double func, double[] grad, object obj) {
-      func = 0; grad[0] = 0; grad[1] = 0;
+    private static void StressFitness(double[] x, double[] fi, object obj) {
       Info info = (obj as Info);
       for (int i = 0; i < info.Coordinates.Rows; i++) {
-        double c = info.Dissimilarities[info.Row, i];
+        double f = Stress(x, info.Dissimilarities[info.Row, i], info.Coordinates[i, 0], info.Coordinates[i, 1]);
+        if (i < info.Row) fi[i] = f;
+        else if (i > info.Row) fi[i - 1] = f;
+      }
+    }
+
+    private static void StressJacobian(double[] x, double[] fi, double[,] jac, object obj) {
+      Info info = (obj as Info);
+      int idx = 0;
+      for (int i = 0; i < info.Coordinates.Rows; i++) {
         if (i != info.Row) {
+          double c = info.Dissimilarities[info.Row, i];
           double a = info.Coordinates[i, 0];
           double b = info.Coordinates[i, 1];
-          func += Stress(x, c, a, b);
-          grad[0] += ((2 * x[0] - 2 * a) * Math.Sqrt(x[1] * x[1] - 2 * b * x[1] + x[0] * x[0] - 2 * a * x[0] + b * b + a * a) - 2 * c * x[0] + 2 * a * c) / Math.Sqrt(x[1] * x[1] - 2 * b * x[1] + x[0] * x[0] - 2 * a * x[0] + b * b + a * a);
-          grad[1] += ((2 * x[1] - 2 * b) * Math.Sqrt(x[1] * x[1] - 2 * b * x[1] + x[0] * x[0] - 2 * a * x[0] + b * b + a * a) - 2 * c * x[1] + 2 * b * c) / Math.Sqrt(x[1] * x[1] - 2 * b * x[1] + x[0] * x[0] - 2 * a * x[0] + b * b + a * a);
+          double f = Stress(x, c, a, b);
+          fi[idx] = f;
+          jac[idx, 0] = 2 * (x[0] - a) * (Math.Sqrt((a - x[0]) * (a - x[0]) + (b - x[1]) * (b - x[1])) - c) / Math.Sqrt((a - x[0]) * (a - x[0]) + (b - x[1]) * (b - x[1]));
+          jac[idx, 1] = 2 * (x[1] - b) * (Math.Sqrt((a - x[0]) * (a - x[0]) + (b - x[1]) * (b - x[1])) - c) / Math.Sqrt((a - x[0]) * (a - x[0]) + (b - x[1]) * (b - x[1]));
+          idx++;
         }
       }

branches/PersistenceSpeedUp/HeuristicLab.Analysis/3.3/Properties/AssemblyInfo.frame

@@ -54 +54 @@
 // by using the '*' as shown below:
 [assembly: AssemblyVersion("3.3.0.0")]
-[assembly: AssemblyFileVersion("3.3.4.$WCREV$")]
+[assembly: AssemblyFileVersion("3.3.5.$WCREV$")]

branches/PersistenceSpeedUp/HeuristicLab.Analysis/3.3/Tests/MultidimensionalScalingTest.cs

@@ -21 +21 @@
 
 using System;
+using System.Globalization;
 using HeuristicLab.Data;
 using Microsoft.VisualStudio.TestTools.UnitTesting;
@@ -42 +43 @@
       distances3[0, 2] = distances3[2, 0] = 6.4;
       distances3[1, 2] = distances3[2, 1] = 5;
-      stress = MultidimensionalScaling.CalculateNormalizedStress(distances3,
-        MultidimensionalScaling.KruskalShepard(distances3));
+      DoubleMatrix coords3 = MultidimensionalScaling.KruskalShepard(distances3);
+      Console.WriteLine("Coordinates: ");
+      Console.WriteLine("A = ({0}, {1}), B = ({2}, {3}), C = ({4}, {5})", coords3[0, 0], coords3[0, 1], coords3[1, 0], coords3[1, 1], coords3[2, 0], coords3[2, 1]);
+      stress = MultidimensionalScaling.CalculateNormalizedStress(distances3, coords3);
+      Console.WriteLine("Stress = " + stress.ToString(CultureInfo.InvariantCulture.NumberFormat));
       Assert.IsTrue(stress < 0.1);
       DoubleMatrix distances4 = new DoubleMatrix(4, 4);

@@ -12 +12 @@
 *.psess
 *.vsp
+*.docstates