Changeset 12969 for branches/gteufl/HeuristicLab.Analysis

Timestamp:

09/25/15 14:39:59 (9 years ago)

Author:

gkronber

Message:

#2478 merged all changes from trunk to branch before trunk-reintegration

Location:

branches/gteufl

Files:

• . (modified) (3 props)
• HeuristicLab.Analysis (modified) (1 prop)
• HeuristicLab.Analysis/3.3/AlleleFrequencyAnalysis/Allele.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/AlleleFrequencyAnalysis/AlleleFrequency.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/AlleleFrequencyAnalysis/AlleleFrequencyAnalyzer.cs (modified) (2 diffs)
• HeuristicLab.Analysis/3.3/AlleleFrequencyAnalysis/AlleleFrequencyCollection.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/AlleleFrequencyAnalysis/AlleleFrequencyCollectionHistory.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/BestScopeSolutionAnalyzer.cs (modified) (10 diffs)
• HeuristicLab.Analysis/3.3/DataVisualization/DataRow.cs (modified) (3 diffs)
• HeuristicLab.Analysis/3.3/DataVisualization/DataRowVisualProperties.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/DataVisualization/DataTable.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/DataVisualization/DataTableHistory.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/DataVisualization/DataTableValuesCollector.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/DataVisualization/DataTableVisualProperties.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/DataVisualization/HeatMap.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/DataVisualization/HeatMapHistory.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/DataVisualization/ScatterPlot.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/DataVisualization/ScatterPlotDataRow.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/DataVisualization/ScatterPlotDataRowVisualProperties.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/DataVisualization/ScatterPlotHistory.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/DataVisualization/ScatterPlotVisualProperties.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/HeuristicLab.Analysis-3.3.csproj (modified) (12 diffs)
• HeuristicLab.Analysis/3.3/MultiAnalyzer.cs (modified) (3 diffs)
• HeuristicLab.Analysis/3.3/MultiObjective/ParetoFrontAnalyzer.cs (modified) (2 diffs)
• HeuristicLab.Analysis/3.3/MultiObjective/RankBasedParetoFrontAnalyzer.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/MultidimensionalScaling/MultidimensionalScaling.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/Plugin.cs.frame (modified) (2 diffs)
• HeuristicLab.Analysis/3.3/PopulationDiversityAnalysis (deleted)
• HeuristicLab.Analysis/3.3/PopulationSimilarityAnalysis (copied) (copied from trunk/sources/HeuristicLab.Analysis/3.3/PopulationSimilarityAnalysis)
• HeuristicLab.Analysis/3.3/Properties/AssemblyInfo.cs.frame (modified) (3 diffs)
• HeuristicLab.Analysis/3.3/QualityAnalysis/BestAverageWorstQualityAnalyzer.cs (modified) (2 diffs)
• HeuristicLab.Analysis/3.3/QualityAnalysis/BestAverageWorstQualityCalculator.cs (modified) (3 diffs)
• HeuristicLab.Analysis/3.3/QualityAnalysis/BestQualityMemorizer.cs (modified) (3 diffs)
• HeuristicLab.Analysis/3.3/QualityAnalysis/QualityAnalyzer.cs (modified) (2 diffs)
• HeuristicLab.Analysis/3.3/QualityAnalysis/QualityDifferenceCalculator.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/QualityAnalysis/QualityDistributionAnalyzer.cs (modified) (2 diffs)
• HeuristicLab.Analysis/3.3/QualityAnalysis/ScaledQualityDifferenceAnalyzer.cs (modified) (2 diffs)
• HeuristicLab.Analysis/3.3/Statistics (copied) (copied from trunk/sources/HeuristicLab.Analysis/3.3/Statistics)
• HeuristicLab.Analysis/3.3/ValueAnalysis/MinAverageMaxValueAnalyzer.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/ValueAnalysis/MinAverageMaxValueCalculator.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/ValueAnalysis/SingleValueAnalyzer.cs (modified) (1 diff)
• HeuristicLab.Analysis/3.3/ValueAnalysis/ValueAnalyzer.cs (modified) (1 diff)

branches/gteufl

@@ -8 +8 @@
 FxCopResults.txt
 Google.ProtocolBuffers-0.9.1.dll
+Google.ProtocolBuffers-2.4.1.473.dll
 HeuristicLab 3.3.5.1.ReSharper.user
 HeuristicLab 3.3.6.0.ReSharper.user
 HeuristicLab.4.5.resharper.user
 HeuristicLab.ExtLibs.6.0.ReSharper.user
+HeuristicLab.Scripting.Development
 HeuristicLab.resharper.user
 ProtoGen.exe
@@ -17 +19 @@
 _ReSharper.HeuristicLab
 _ReSharper.HeuristicLab 3.3
+_ReSharper.HeuristicLab 3.3 Tests
 _ReSharper.HeuristicLab.ExtLibs
 bin
 protoc.exe
-_ReSharper.HeuristicLab 3.3 Tests
-Google.ProtocolBuffers-2.4.1.473.dll
+obj

@@ -8 +8 @@
 FxCopResults.txt
 Google.ProtocolBuffers-0.9.1.dll
+Google.ProtocolBuffers-2.4.1.473.dll
 HeuristicLab 3.3.5.1.ReSharper.user
 HeuristicLab 3.3.6.0.ReSharper.user
 HeuristicLab.4.5.resharper.user
 HeuristicLab.ExtLibs.6.0.ReSharper.user
+HeuristicLab.Scripting.Development
 HeuristicLab.resharper.user
 ProtoGen.exe
@@ -17 +19 @@
 _ReSharper.HeuristicLab
 _ReSharper.HeuristicLab 3.3
+_ReSharper.HeuristicLab 3.3 Tests
 _ReSharper.HeuristicLab.ExtLibs
 bin
 protoc.exe
-_ReSharper.HeuristicLab 3.3 Tests
-Google.ProtocolBuffers-2.4.1.473.dll
+obj

branches/gteufl/HeuristicLab.Analysis/3.3/AlleleFrequencyAnalysis/Allele.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/AlleleFrequencyAnalysis/AlleleFrequency.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/AlleleFrequencyAnalysis/AlleleFrequencyAnalyzer.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.
@@ -37 +37 @@
   [Item("AlleleFrequencyAnalyzer", "An operator for analyzing the frequency of alleles.")]
   [StorableClass]
-  public abstract class AlleleFrequencyAnalyzer<T> : SingleSuccessorOperator, IAnalyzer where T : class, IItem {
+  public abstract class AlleleFrequencyAnalyzer<T> : SingleSuccessorOperator, IAnalyzer, ISingleObjectiveOperator where T : class, IItem {
     public virtual bool EnabledByDefault {
       get { return false; }

branches/gteufl/HeuristicLab.Analysis/3.3/AlleleFrequencyAnalysis/AlleleFrequencyCollection.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/AlleleFrequencyAnalysis/AlleleFrequencyCollectionHistory.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/BestScopeSolutionAnalyzer.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.
@@ -20 +20 @@
 #endregion
 
+using System;
 using System.Collections.Generic;
 using System.Linq;
@@ -36 +37 @@
   [Item("BestScopeSolutionAnalyzer", "An operator that extracts the scope containing the best quality.")]
   [StorableClass]
-  public class BestScopeSolutionAnalyzer : SingleSuccessorOperator, IAnalyzer {
+  public class BestScopeSolutionAnalyzer : SingleSuccessorOperator, IAnalyzer, ISingleObjectiveOperator {
+
     public virtual bool EnabledByDefault {
       get { return true; }
     }
-
     public LookupParameter<BoolValue> MaximizationParameter {
       get { return (LookupParameter<BoolValue>)Parameters["Maximization"]; }
@@ -47 +48 @@
       get { return (ScopeTreeLookupParameter<DoubleValue>)Parameters["Quality"]; }
     }
-    public ILookupParameter<IScope> BestSolutionParameter {
-      get { return (ILookupParameter<IScope>)Parameters["BestSolution"]; }
-    }
-    public ILookupParameter<IScope> BestKnownSolutionParameter {
-      get { return (ILookupParameter<IScope>)Parameters["BestKnownSolution"]; }
+    public IFixedValueParameter<StringValue> BestSolutionResultNameParameter {
+      get { return (IFixedValueParameter<StringValue>)Parameters["BestSolution ResultName"]; }
     }
     public ILookupParameter<DoubleValue> BestKnownQualityParameter {
@@ -58 +56 @@
     public IValueLookupParameter<ResultCollection> ResultsParameter {
       get { return (IValueLookupParameter<ResultCollection>)Parameters["Results"]; }
+    }
+
+    public string BestSolutionResultName {
+      get { return BestSolutionResultNameParameter.Value.Value; }
+      set { BestSolutionResultNameParameter.Value.Value = value; }
     }
 
@@ -67 +70 @@
       return new BestScopeSolutionAnalyzer(this, cloner);
     }
+
+    [StorableHook(HookType.AfterDeserialization)]
+    private void AfterDeserialization() {
+      // BackwardsCompatibility3.3
+      #region Backwards compatible code, remove with 3.4
+      if (!Parameters.ContainsKey("BestSolution ResultName"))
+        Parameters.Add(new FixedValueParameter<StringValue>("BestSolution ResultName", "The name of the result for storing the best solution.", new StringValue("Best Solution")));
+      if (Parameters.ContainsKey("BestSolution")) Parameters.Remove("BestSolution");
+      if (Parameters.ContainsKey("BestKnownSolution")) Parameters.Remove("BestKnownSolution");
+      #endregion
+    }
     #endregion
     public BestScopeSolutionAnalyzer()
@@ -72 +86 @@
       Parameters.Add(new LookupParameter<BoolValue>("Maximization", "True if the problem is a maximization problem."));
       Parameters.Add(new ScopeTreeLookupParameter<DoubleValue>("Quality", "The qualities of the solutions."));
-      Parameters.Add(new LookupParameter<IScope>("BestSolution", "The best solution."));
-      Parameters.Add(new LookupParameter<IScope>("BestKnownSolution", "The best known solution."));
+      Parameters.Add(new FixedValueParameter<StringValue>("BestSolution ResultName", "The name of the result for storing the best solution.", new StringValue("Best Solution")));
       Parameters.Add(new LookupParameter<DoubleValue>("BestKnownQuality", "The quality of the best known solution."));
       Parameters.Add(new ValueLookupParameter<ResultCollection>("Results", "The result collection where the solution should be stored."));
@@ -84 +97 @@
       DoubleValue bestKnownQuality = BestKnownQualityParameter.ActualValue;
 
+      if (results.ContainsKey(BestSolutionResultName) && !typeof(IScope).IsAssignableFrom(results[BestSolutionResultName].DataType)) {
+        throw new InvalidOperationException(string.Format("Could not add best solution result, because there is already a result with the name \"{0}\" present in the result collection.", BestSolutionResultName));
+      }
+
       int i = -1;
       if (!max)
@@ -91 +108 @@
       IEnumerable<IScope> scopes = new IScope[] { ExecutionContext.Scope };
       for (int j = 0; j < QualityParameter.Depth; j++)
-        scopes = scopes.Select(x => (IEnumerable<IScope>)x.SubScopes).Aggregate((a, b) => a.Concat(b));
+        scopes = scopes.SelectMany(x => x.SubScopes);
       IScope currentBestScope = scopes.ToList()[i];
 
@@ -98 +115 @@
           || !max && qualities[i].Value < bestKnownQuality.Value) {
         BestKnownQualityParameter.ActualValue = new DoubleValue(qualities[i].Value);
-        BestKnownSolutionParameter.ActualValue = (IScope)currentBestScope.Clone();
       }
 
-      IScope solution = BestSolutionParameter.ActualValue;
-      if (solution == null) {
-        solution = (IScope)currentBestScope.Clone();
-        BestSolutionParameter.ActualValue = solution;
-        results.Add(new Result("Best Solution", solution));
+      if (!results.ContainsKey(BestSolutionResultName)) {
+        var cloner = new Cloner();
+        //avoid cloning of subscopes and the results collection that the solution is put in
+        cloner.RegisterClonedObject(results, new ResultCollection());
+        cloner.RegisterClonedObject(currentBestScope.SubScopes, new ScopeList());
+        var solution = cloner.Clone(currentBestScope);
+
+        results.Add(new Result(BestSolutionResultName, solution));
       } else {
+        var bestSolution = (IScope)results[BestSolutionResultName].Value;
         string qualityName = QualityParameter.TranslatedName;
-        if (solution.Variables.ContainsKey(qualityName)) {
-          double bestSoFarQuality = (solution.Variables[qualityName].Value as DoubleValue).Value;
-          if (max && qualities[i].Value > bestSoFarQuality
-            || !max && qualities[i].Value < bestSoFarQuality) {
-            solution = (IScope)currentBestScope.Clone();
-            BestSolutionParameter.ActualValue = solution;
-            results["Best Solution"].Value = solution;
+        if (bestSolution.Variables.ContainsKey(qualityName)) {
+          double bestQuality = ((DoubleValue)bestSolution.Variables[qualityName].Value).Value;
+          if (max && qualities[i].Value > bestQuality
+              || !max && qualities[i].Value < bestQuality) {
+            var cloner = new Cloner();
+            //avoid cloning of subscopes and the results collection that the solution is put in
+            cloner.RegisterClonedObject(results, new ResultCollection());
+            cloner.RegisterClonedObject(currentBestScope.SubScopes, new ScopeList());
+            var solution = cloner.Clone(currentBestScope);
+
+            results[BestSolutionResultName].Value = solution;
           }
         }
       }
-
       return base.Apply();
     }

branches/gteufl/HeuristicLab.Analysis/3.3/DataVisualization/DataRow.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.
@@ -76 +76 @@
       this.values = new ObservableList<double>(original.values);
     }
+    public DataRow() : this("DataRow") { }
     public DataRow(string name)
       : base(name) {
@@ -116 +117 @@
       OnVisualPropertiesChanged();
     }
+    protected override void OnNameChanged() {
+      base.OnNameChanged();
+      VisualProperties.DisplayName = Name;
+    }
   }
 }

branches/gteufl/HeuristicLab.Analysis/3.3/DataVisualization/DataRowVisualProperties.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/DataVisualization/DataTable.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/DataVisualization/DataTableHistory.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/DataVisualization/DataTableValuesCollector.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/DataVisualization/DataTableVisualProperties.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/DataVisualization/HeatMap.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/DataVisualization/HeatMapHistory.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/DataVisualization/ScatterPlot.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/DataVisualization/ScatterPlotDataRow.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/DataVisualization/ScatterPlotDataRowVisualProperties.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/DataVisualization/ScatterPlotHistory.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/DataVisualization/ScatterPlotVisualProperties.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/HeuristicLab.Analysis-3.3.csproj

@@ -11 +11 @@
     <RootNamespace>HeuristicLab.Analysis</RootNamespace>
     <AssemblyName>HeuristicLab.Analysis-3.3</AssemblyName>
-    <TargetFrameworkVersion>v4.0</TargetFrameworkVersion>
+    <TargetFrameworkVersion>v4.5</TargetFrameworkVersion>
     <TargetFrameworkProfile>
     </TargetFrameworkProfile>
@@ -46 +46 @@
     <WarningLevel>4</WarningLevel>
     <CodeAnalysisRuleSet>AllRules.ruleset</CodeAnalysisRuleSet>
+    <Prefer32Bit>false</Prefer32Bit>
   </PropertyGroup>
   <PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Release|AnyCPU' ">
@@ -57 +58 @@
     </DocumentationFile>
     <CodeAnalysisRuleSet>AllRules.ruleset</CodeAnalysisRuleSet>
+    <Prefer32Bit>false</Prefer32Bit>
   </PropertyGroup>
   <PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Debug|x86' ">
@@ -66 +68 @@
     <ErrorReport>prompt</ErrorReport>
     <CodeAnalysisRuleSet>AllRules.ruleset</CodeAnalysisRuleSet>
+    <Prefer32Bit>false</Prefer32Bit>
   </PropertyGroup>
   <PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Release|x86' ">
@@ -77 +80 @@
     <ErrorReport>prompt</ErrorReport>
     <CodeAnalysisRuleSet>AllRules.ruleset</CodeAnalysisRuleSet>
+    <Prefer32Bit>false</Prefer32Bit>
   </PropertyGroup>
   <PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Debug|x64' ">
@@ -86 +90 @@
     <ErrorReport>prompt</ErrorReport>
     <CodeAnalysisRuleSet>AllRules.ruleset</CodeAnalysisRuleSet>
+    <Prefer32Bit>false</Prefer32Bit>
   </PropertyGroup>
   <PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Release|x64' ">
@@ -97 +102 @@
     <ErrorReport>prompt</ErrorReport>
     <CodeAnalysisRuleSet>AllRules.ruleset</CodeAnalysisRuleSet>
+    <Prefer32Bit>false</Prefer32Bit>
   </PropertyGroup>
   <ItemGroup>
@@ -142 +148 @@
     <Compile Include="MultiObjective\ParetoFrontAnalyzer.cs" />
     <Compile Include="Plugin.cs" />
-    <Compile Include="PopulationDiversityAnalysis\PopulationDiversityAnalyzer.cs" />
-    <Compile Include="PopulationDiversityAnalysis\SingleObjectivePopulationDiversityAnalyzer.cs" />
+    <Compile Include="PopulationSimilarityAnalysis\PopulationDiversityAnalyzer.cs" />
+    <Compile Include="PopulationSimilarityAnalysis\PopulationSimilarityAnalyzer.cs" />
+    <Compile Include="PopulationSimilarityAnalysis\SingleObjectivePopulationDiversityAnalyzer.cs" />
     <Compile Include="QualityAnalysis\BestAverageWorstQualityAnalyzer.cs" />
     <Compile Include="QualityAnalysis\BestAverageWorstQualityCalculator.cs" />
@@ -153 +160 @@
     <Compile Include="QualityAnalysis\QualityDistributionAnalyzer.cs" />
     <Compile Include="QualityAnalysis\ScaledQualityDifferenceAnalyzer.cs" />
+    <Compile Include="Statistics\BonferroniHolm.cs" />
+    <Compile Include="Statistics\EnumerableStatisticsExtension.cs" />
+    <Compile Include="Statistics\Fitting\ExpFitting.cs" />
+    <Compile Include="Statistics\Fitting\IFitting.cs" />
+    <Compile Include="Statistics\KruskalWallisTest.cs" />
+    <Compile Include="Statistics\Fitting\LinearLeastSquaresFitting.cs" />
+    <Compile Include="Statistics\Fitting\LogFitting.cs" />
+    <Compile Include="Statistics\KernelDensityEstimator.cs" />
+    <Compile Include="Statistics\PairwiseTest.cs" />
+    <Compile Include="Statistics\SampleSizeDetermination.cs" />
     <Compile Include="ValueAnalysis\SingleValueAnalyzer.cs" />
     <Compile Include="ValueAnalysis\MinAverageMaxValueAnalyzer.cs" />
@@ -236 +253 @@
     </BootstrapperPackage>
   </ItemGroup>
+  <ItemGroup />
   <Import Project="$(MSBuildToolsPath)\Microsoft.CSharp.targets" />
   <!-- To modify your build process, add your task inside one of the targets below and uncomment it. 
@@ -245 +263 @@
   -->
   <PropertyGroup>
-   <PreBuildEvent Condition=" '$(OS)' == 'Windows_NT' ">set Path=%25Path%25;$(ProjectDir);$(SolutionDir)
+    <PreBuildEvent Condition=" '$(OS)' == 'Windows_NT' ">set Path=%25Path%25;$(ProjectDir);$(SolutionDir)
 set ProjectDir=$(ProjectDir)
 set SolutionDir=$(SolutionDir)
@@ -252 +270 @@
 call PreBuildEvent.cmd
 </PreBuildEvent>
-<PreBuildEvent Condition=" '$(OS)' != 'Windows_NT' ">
+    <PreBuildEvent Condition=" '$(OS)' != 'Windows_NT' ">
 export ProjectDir=$(ProjectDir)
 export SolutionDir=$(SolutionDir)

branches/gteufl/HeuristicLab.Analysis/3.3/MultiAnalyzer.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.
@@ -69 +69 @@
     }
 
-    public override IOperation Apply() {
+    public override IOperation InstrumentedApply() {
       IntValue interval = UpdateIntervalParameter.ActualValue;
       if (interval == null) interval = new IntValue(1);
@@ -84 +84 @@
         foreach (IndexedItem<IAnalyzer> item in Operators.CheckedItems)
           next.Add(ExecutionContext.CreateOperation(item.Value));
-        next.Add(base.Apply());
+        next.Add(base.InstrumentedApply());
         return next;
       } else {
-        return base.Apply();
+        return base.InstrumentedApply();
       }
     }

branches/gteufl/HeuristicLab.Analysis/3.3/MultiObjective/ParetoFrontAnalyzer.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.
@@ -31 +31 @@
   [Item("ParetoFrontAnalyzer", "Analyzer for multiobjective problems that collects and presents the current Pareto front as double matrix as well as the solution scopes that lie on the current front.")]
   [StorableClass]
-  public abstract class ParetoFrontAnalyzer : SingleSuccessorOperator, IAnalyzer {
+  public abstract class ParetoFrontAnalyzer : SingleSuccessorOperator, IAnalyzer, IMultiObjectiveOperator {
     public virtual bool EnabledByDefault {
       get { return true; }

branches/gteufl/HeuristicLab.Analysis/3.3/MultiObjective/RankBasedParetoFrontAnalyzer.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/MultidimensionalScaling/MultidimensionalScaling.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/Plugin.cs.frame

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.
@@ -26 +26 @@
   /// Plugin class for HeuristicLab.Analysis plugin.
   /// </summary>
-  [Plugin("HeuristicLab.Analysis", "3.3.9.$WCREV$")]
+  [Plugin("HeuristicLab.Analysis", "3.3.12.$WCREV$")]
   [PluginFile("HeuristicLab.Analysis-3.3.dll", PluginFileType.Assembly)]
   [PluginDependency("HeuristicLab.ALGLIB", "3.7.0")]

branches/gteufl/HeuristicLab.Analysis/3.3/Properties/AssemblyInfo.cs.frame

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.
@@ -32 +32 @@
 [assembly: AssemblyCompany("")]
 [assembly: AssemblyProduct("HeuristicLab")]
-[assembly: AssemblyCopyright("(c) 2002-2013 HEAL")]
+[assembly: AssemblyCopyright("(c) 2002-2015 HEAL")]
 [assembly: AssemblyTrademark("")]
 [assembly: AssemblyCulture("")]
@@ -54 +54 @@
 // by using the '*' as shown below:
 [assembly: AssemblyVersion("3.3.0.0")]
-[assembly: AssemblyFileVersion("3.3.9.$WCREV$")]
+[assembly: AssemblyFileVersion("3.3.12.$WCREV$")]

branches/gteufl/HeuristicLab.Analysis/3.3/QualityAnalysis/BestAverageWorstQualityAnalyzer.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.
@@ -36 +36 @@
   [Item("BestAverageWorstQualityAnalyzer", "An operator which analyzes the best, average and worst quality of solutions in the scope tree.")]
   [StorableClass]
-  public sealed class BestAverageWorstQualityAnalyzer : AlgorithmOperator, IAnalyzer {
+  public sealed class BestAverageWorstQualityAnalyzer : AlgorithmOperator, IAnalyzer, ISingleObjectiveOperator {
     #region Parameter properties
     public ValueLookupParameter<BoolValue> MaximizationParameter {

branches/gteufl/HeuristicLab.Analysis/3.3/QualityAnalysis/BestAverageWorstQualityCalculator.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.
@@ -24 +24 @@
 using HeuristicLab.Data;
 using HeuristicLab.Operators;
+using HeuristicLab.Optimization;
 using HeuristicLab.Parameters;
 using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
@@ -33 +34 @@
   [Item("BestAverageWorstQualityCalculator", "An operator which calculates the best, average and worst quality of solutions in the scope tree.")]
   [StorableClass]
-  public sealed class BestAverageWorstQualityCalculator : SingleSuccessorOperator {
+  public sealed class BestAverageWorstQualityCalculator : SingleSuccessorOperator, ISingleObjectiveOperator {
     public ValueLookupParameter<BoolValue> MaximizationParameter {
       get { return (ValueLookupParameter<BoolValue>)Parameters["Maximization"]; }

branches/gteufl/HeuristicLab.Analysis/3.3/QualityAnalysis/BestQualityMemorizer.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.
@@ -24 +24 @@
 using HeuristicLab.Data;
 using HeuristicLab.Operators;
+using HeuristicLab.Optimization;
 using HeuristicLab.Parameters;
 using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
@@ -33 +34 @@
   [Item("BestQualityMemorizer", "An operator that updates the best quality found so far with those qualities contained in the scope tree.")]
   [StorableClass]
-  public class BestQualityMemorizer : SingleSuccessorOperator {
+  public class BestQualityMemorizer : SingleSuccessorOperator, ISingleObjectiveOperator {
     public ValueLookupParameter<BoolValue> MaximizationParameter {
       get { return (ValueLookupParameter<BoolValue>)Parameters["Maximization"]; }

branches/gteufl/HeuristicLab.Analysis/3.3/QualityAnalysis/QualityAnalyzer.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.
@@ -36 +36 @@
   [Item("QualityAnalyzer", "An operator which analyzes the quality of solutions in the scope tree.")]
   [StorableClass]
-  public sealed class QualityAnalyzer : AlgorithmOperator, IAnalyzer {
+  public sealed class QualityAnalyzer : AlgorithmOperator, IAnalyzer, ISingleObjectiveOperator {
     #region Parameter properties
     public ValueLookupParameter<BoolValue> MaximizationParameter {

branches/gteufl/HeuristicLab.Analysis/3.3/QualityAnalysis/QualityDifferenceCalculator.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/QualityAnalysis/QualityDistributionAnalyzer.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.
@@ -32 +32 @@
   [Item("QualityDistributionAnalyzer", "Analyzes the distribution of the quality values in that it adds a Histogram of them into the result collection.")]
   [StorableClass]
-  public class QualityDistributionAnalyzer : SingleSuccessorOperator, IAnalyzer, IIterationBasedOperator {
+  public class QualityDistributionAnalyzer : SingleSuccessorOperator, IAnalyzer, IIterationBasedOperator, ISingleObjectiveOperator {
 
     #region Parameter properties

branches/gteufl/HeuristicLab.Analysis/3.3/QualityAnalysis/ScaledQualityDifferenceAnalyzer.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.
@@ -33 +33 @@
 A value towards 0 always means that it's closer to the better fitness value, while a value towards 1 means that it's closer to the worse fitness value.")]
   [StorableClass]
-  public class ScaledQualityDifferenceAnalyzer : SingleSuccessorOperator, IAnalyzer {
+  public class ScaledQualityDifferenceAnalyzer : SingleSuccessorOperator, IAnalyzer, ISingleObjectiveOperator {
     public virtual bool EnabledByDefault {
       get { return true; }

branches/gteufl/HeuristicLab.Analysis/3.3/ValueAnalysis/MinAverageMaxValueAnalyzer.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/ValueAnalysis/MinAverageMaxValueCalculator.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/ValueAnalysis/SingleValueAnalyzer.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

branches/gteufl/HeuristicLab.Analysis/3.3/ValueAnalysis/ValueAnalyzer.cs

@@ -1 +1 @@
 #region License Information
 /* HeuristicLab
- * Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
  *
  * This file is part of HeuristicLab.

@@ -8 +8 @@
 FxCopResults.txt
 Google.ProtocolBuffers-0.9.1.dll
+Google.ProtocolBuffers-2.4.1.473.dll
 HeuristicLab 3.3.5.1.ReSharper.user
 HeuristicLab 3.3.6.0.ReSharper.user
 HeuristicLab.4.5.resharper.user
 HeuristicLab.ExtLibs.6.0.ReSharper.user
+HeuristicLab.Scripting.Development
 HeuristicLab.resharper.user
 ProtoGen.exe
@@ -17 +19 @@
 _ReSharper.HeuristicLab
 _ReSharper.HeuristicLab 3.3
+_ReSharper.HeuristicLab 3.3 Tests
 _ReSharper.HeuristicLab.ExtLibs
 bin
 protoc.exe
-_ReSharper.HeuristicLab 3.3 Tests
-Google.ProtocolBuffers-2.4.1.473.dll
+obj