Changeset 12850 for branches/DataAnalysis.ComplexityAnalyzer/HeuristicLab.Problems.DataAnalysis.Symbolic

Timestamp:

08/12/15 10:59:16 (9 years ago)

Author:

mkommend

Message:

#2175: Forgot to commit merge info and some files in r12848.

Location:

branches/DataAnalysis.ComplexityAnalyzer/HeuristicLab.Problems.DataAnalysis.Symbolic

Files:

• . (modified) (1 prop)
• 3.4/Formatters/SymbolicDataAnalysisExpressionCSharpFormatter.cs (modified) (1 diff)
• 3.4/Interfaces/ISymbolicDataAnalysisImpactValuesCalculator.cs (modified) (1 diff)
• 3.4/TreeMatching/SymbolicExpressionTreePhenotypicSimilarityCalculator.cs (modified) (2 diffs)

branches/DataAnalysis.ComplexityAnalyzer/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Formatters/SymbolicDataAnalysisExpressionCSharpFormatter.cs

@@ -175 +175 @@
         varNames.Add(((VariableTreeNode)node).VariableName);
       }
-      foreach (var varName in varNames) {
-        strBuilder.Append("double " + varName);
-        if (varName != varNames.Last()) {
-          strBuilder.Append(", ");
-        }
-      }
+
+      var orderedNames = varNames.OrderBy(n => n, new NaturalStringComparer()).Select(n=> "double " + n);
+      strBuilder.Append(string.Join(", ", orderedNames));
 
       strBuilder.AppendLine(") {");

branches/DataAnalysis.ComplexityAnalyzer/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Interfaces/ISymbolicDataAnalysisImpactValuesCalculator.cs

@@ -6 +6 @@
   public interface ISymbolicDataAnalysisSolutionImpactValuesCalculator : IItem {
     double CalculateReplacementValue(ISymbolicDataAnalysisModel model, ISymbolicExpressionTreeNode node, IDataAnalysisProblemData problemData, IEnumerable<int> rows);
-    double CalculateImpactValue(ISymbolicDataAnalysisModel model, ISymbolicExpressionTreeNode node, IDataAnalysisProblemData problemData, IEnumerable<int> rows, double originalQuality = double.NaN);
+    double CalculateImpactValue(ISymbolicDataAnalysisModel model, ISymbolicExpressionTreeNode node, IDataAnalysisProblemData problemData, IEnumerable<int> rows, double qualityForImpactsCalculation = double.NaN);
     void CalculateImpactAndReplacementValues(ISymbolicDataAnalysisModel model, ISymbolicExpressionTreeNode node, IDataAnalysisProblemData problemData,
-      IEnumerable<int> rows, out double impactValue, out double replacementValue, double originalQuality = double.NaN);
+      IEnumerable<int> rows, out double impactValue, out double replacementValue, out double newQualityForImpactsCalculation, double qualityForImpactsCalculation = double.NaN);
   }
 }

branches/DataAnalysis.ComplexityAnalyzer/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeMatching/SymbolicExpressionTreePhenotypicSimilarityCalculator.cs

@@ -65 +65 @@
 
       OnlineCalculatorError error;
-      var r2 = OnlinePearsonsRSquaredCalculator.Calculate(v1, v2, out error);
+      var r = OnlinePearsonsRCalculator.Calculate(v1, v2, out error);
+
+      var r2 = error == OnlineCalculatorError.None ? r * r : 0;
 
       if (r2 > 1.0)
         r2 = 1.0;
 
-      return error == OnlineCalculatorError.None ? r2 : 0;
+      return r2;
     }
 
@@ -87 +89 @@
 
       OnlineCalculatorError error;
-      var r2 = OnlinePearsonsRSquaredCalculator.Calculate(leftValues, rightValues, out error);
+      var r = OnlinePearsonsRCalculator.Calculate(leftValues, rightValues, out error);
+
+      var r2 = error == OnlineCalculatorError.None ? r * r : 0;
 
       if (r2 > 1.0)
-        r2 = 1.0; // sometimes due to fp errors it can happen that the r2 is over 1 (like 1.0000000009)
+        r2 = 1.0;
 
-      return error == OnlineCalculatorError.None ? r2 : 0;
+      return r2;
     }
   }