Changeset 12231 for branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Tracking/Analyzers/SymbolicDataAnalysisSubtreeSampleCountAnalyzer.cs

Timestamp:

03/20/15 18:20:59 (10 years ago)

Author:

bburlacu

Message:

#1772: Changed the way node highlighting is performed (taking into account sampling count relative to current generation). Made NodeWeight field storable in the SymbolicExpressionTreeNode. Updated the statistics counting in the TraceCalculator.

File:

• branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Tracking/Analyzers/SymbolicDataAnalysisSubtreeSampleCountAnalyzer.cs (copied) (copied from branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Tracking/Analyzers/SymbolicDataAnalysisTraceOverlapAnalyzer.cs) (3 diffs)

branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Tracking/Analyzers/SymbolicDataAnalysisSubtreeSampleCountAnalyzer.cs

@@ -20 +20 @@
 #endregion
 
-using System;
 using System.Linq;
-using HeuristicLab.Analysis;
 using HeuristicLab.Common;
 using HeuristicLab.Core;
@@ -28 +26 @@
 using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
 using HeuristicLab.EvolutionTracking;
-using HeuristicLab.Optimization;
 using HeuristicLab.Parameters;
 using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
 
 namespace HeuristicLab.Problems.DataAnalysis.Symbolic.Tracking.Analyzers {
-  [Item("SymbolicDataAnalysisTraceOverlapAnalyzer", "An analyzer for trace graph overlap.")]
+  [Item("SymbolicDataAnalysisSubtreeSampleCountAnalyzer", "An analyzer for trace graph overlap.")]
   [StorableClass]
-  public class SymbolicDataAnalysisTraceOverlapAnalyzer : EvolutionTrackingAnalyzer<ISymbolicExpressionTree> {
-    private const string PercentageOfBestSolutionsParameterName = "PercentageOfBestSolutions";
+  public class SymbolicDataAnalysisSubtreeSampleCountAnalyzer : EvolutionTrackingAnalyzer<ISymbolicExpressionTree> {
+    private const string CacheTraceNodesParameterName = "CacheTraceNodes";
+    private readonly TraceCalculator traceCalculator = new TraceCalculator { UpdateVertexWeights = true, UpdateSubtreeWeights = true, CacheTraceNodes = true };
 
     #region parameters
-    public IFixedValueParameter<DoubleValue> PercentageOfBestSolutionsParameter {
-      get { return (IFixedValueParameter<DoubleValue>)Parameters[PercentageOfBestSolutionsParameterName]; }
+    public IFixedValueParameter<BoolValue> CacheTraceNodesParameter {
+      get { return (IFixedValueParameter<BoolValue>)Parameters[CacheTraceNodesParameterName]; }
     }
     #endregion
 
-    public SymbolicDataAnalysisTraceOverlapAnalyzer() {
-      UpdateCounterParameter.ActualName = "TraceOverlapAnalyzerUpdateCounter";
-      Parameters.Add(new FixedValueParameter<DoubleValue>(PercentageOfBestSolutionsParameterName, new DoubleValue(1.0)));
+    #region parameter properties
+    public bool CacheTraceNodes {
+      get { return CacheTraceNodesParameter.Value.Value; }
+      set { CacheTraceNodesParameter.Value.Value = value; }
+    }
+    #endregion
+
+    public SymbolicDataAnalysisSubtreeSampleCountAnalyzer() {
+      UpdateCounterParameter.ActualName = "SubtreeSampleCountAnalyzerUpdateCounter";
+
+      Parameters.Add(new FixedValueParameter<BoolValue>(CacheTraceNodesParameterName, new BoolValue(true)));
     }
 
-    private SymbolicDataAnalysisTraceOverlapAnalyzer(SymbolicDataAnalysisTraceOverlapAnalyzer original, Cloner cloner)
+    private SymbolicDataAnalysisSubtreeSampleCountAnalyzer(SymbolicDataAnalysisSubtreeSampleCountAnalyzer original, Cloner cloner)
       : base(original, cloner) {
     }
 
     public override IDeepCloneable Clone(Cloner cloner) {
-      return new SymbolicDataAnalysisTraceOverlapAnalyzer(this, cloner);
+      return new SymbolicDataAnalysisSubtreeSampleCountAnalyzer(this, cloner);
+    }
+
+    public override void ClearState() {
+      base.ClearState();
+      traceCalculator.ResetState();
+    }
+
+    public override void InitializeState() {
+      traceCalculator.ResetState();
     }
 
     [StorableConstructor]
-    private SymbolicDataAnalysisTraceOverlapAnalyzer(bool deserializing) : base(deserializing) { }
+    private SymbolicDataAnalysisSubtreeSampleCountAnalyzer(bool deserializing) : base(deserializing) { }
 
     public override IOperation Apply() {
@@ -79 +94 @@
         return base.Apply();
 
-      var bestSolutionsPercentage = PercentageOfBestSolutionsParameter.Value.Value;
-      int n = (int)Math.Round(bestSolutionsPercentage * PopulationSize.Value);
-      double avgTraceOverlap = 0;
+      traceCalculator.CacheTraceNodes = CacheTraceNodes;
+      if (Generation.Value > 0) {
+        var rank = PopulationGraph.GetByRank(Generation.Value).Cast<IGenealogyGraphNode<ISymbolicExpressionTree>>().ToList();
+        foreach (var n in rank)
+          traceCalculator.Trace(n, 2, false); // during this call weights will be updated
 
-      if (Generation.Value > 0) {
-        var nodes = PopulationGraph.GetByRank(Generation.Value).Cast<IGenealogyGraphNode<ISymbolicExpressionTree>>().OrderByDescending(x => x.Quality).Take(n);
-        avgTraceOverlap = nodes.Average(x => TraceCalculator.TraceSubtree(x, 2).Vertices.Count());
-      }
-
-      DataTable table;
-      if (!Results.ContainsKey("AverageTraceOverlap")) {
-        table = new DataTable("Average trace overlap");
-        var row = new DataRow("Average trace overlap") { VisualProperties = { StartIndexZero = true } };
-        row.Values.Add(avgTraceOverlap);
-        table.Rows.Add(row);
-        Results.Add(new Result("AverageTraceOverlap", table));
-      } else {
-        table = (DataTable)Results["AverageTraceOverlap"].Value;
-        table.Rows["Average trace overlap"].Values.Add(avgTraceOverlap);
+        foreach (var v in traceCalculator.TraceGraph.Vertices) {
+          var g = PopulationGraph.GetByContent(v.Data);
+          g.Weight = v.Weight;
+        }
       }
       return base.Apply();