Changeset 11975 for branches/ALPS/HeuristicLab.Problems.DataAnalysis.Symbolic

Timestamp:

02/10/15 09:57:29 (10 years ago)

Author:

pfleck

Message:

#2269 merged trunk

Location:

branches/ALPS

Files:

• . (modified) (1 prop)
• HeuristicLab.Problems.DataAnalysis.Symbolic (modified) (1 prop)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisPopulationDiversityAnalyzer.cs (copied) (copied from trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisPopulationDiversityAnalyzer.cs)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Formatters/SymbolicDataAnalysisExpressionExcelFormatter.cs (modified) (1 diff)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj (modified) (2 diffs)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Interpreter/SymbolicDataAnalysisExpressionTreeLinearInterpreter.cs (modified) (1 diff)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Matching (deleted)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisExpressionTreeSimilarityCalculator.cs (copied) (copied from trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisExpressionTreeSimilarityCalculator.cs)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisProblem.cs (modified) (4 diffs)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeMatching (copied) (copied from trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeMatching)

branches/ALPS/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Formatters/SymbolicDataAnalysisExpressionExcelFormatter.cs

@@ -215 +215 @@
         double threshold = variableConditionTreeNode.Threshold;
         double slope = variableConditionTreeNode.Slope;
-        string p = "(1 / (1 + EXP(-" + slope.ToString(CultureInfo.InvariantCulture) + "* (" + GetColumnToVariableName(variableConditionTreeNode.VariableName) + "-" + threshold.ToString(CultureInfo.InvariantCulture) + "))))";
-        stringBuilder.Append("INT((");
+        string p = "(1 / (1 + EXP(-" + slope.ToString(CultureInfo.InvariantCulture) + " * (" + GetColumnToVariableName(variableConditionTreeNode.VariableName) + "-" + threshold.ToString(CultureInfo.InvariantCulture) + "))))";
+        stringBuilder.Append("((");
         stringBuilder.Append(FormatRecursively(node.GetSubtree(0)));
         stringBuilder.Append("*");

branches/ALPS/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj

@@ -135 +135 @@
     <Compile Include="Importer\Token.cs" />
     <Compile Include="Interfaces\IModelBacktransformator.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeCanonicalSorter.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeEqualityComparer.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeMatching.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeMaxCommonSequenceCalculator.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeNodeComparer.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeNodeSimilarityComparer.cs" />
     <Compile Include="SymbolicExpressionTreeBacktransformator.cs" />
     <Compile Include="SymbolicDataAnalysisExpressionPruningOperator.cs" />
@@ -239 +233 @@
     <Compile Include="Symbols\VariableTreeNode.cs" />
     <Compile Include="TransformationToSymbolicTreeMapper.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeBottomUpSimilarityCalculator.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeCanonicalSorter.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeEqualityComparer.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeMatching.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeMaxCommonSubtreeSimilarityCalculator.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeNodeComparer.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeNodeEqualityComparer.cs" />
     <None Include="HeuristicLab.snk" />
     <None Include="Plugin.cs.frame" />

branches/ALPS/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Interpreter/SymbolicDataAnalysisExpressionTreeLinearInterpreter.cs

@@ -352 +352 @@
     }
 
-    private static void PrepareInstructions(LinearInstruction[] code, Dataset dataset) {
+    public static void PrepareInstructions(LinearInstruction[] code, Dataset dataset) {
       for (int i = 0; i != code.Length; ++i) {
         var instr = code[i];

branches/ALPS/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisProblem.cs

@@ -23 +23 @@
 using System.Drawing;
 using System.Linq;
+using HeuristicLab.Analysis;
 using HeuristicLab.Common;
 using HeuristicLab.Common.Resources;
@@ -29 +30 @@
 using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
 using HeuristicLab.Optimization;
+using HeuristicLab.Optimization.Operators;
 using HeuristicLab.Parameters;
 using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
@@ -231 +233 @@
       Operators.Add(new MinAverageMaxSymbolicExpressionTreeLengthAnalyzer());
       Operators.Add(new SymbolicExpressionTreeLengthAnalyzer());
+      Operators.Add(new SingleObjectivePopulationDiversityAnalyzer());
       ParameterizeOperators();
     }
@@ -350 +353 @@
         op.EvaluatorParameter.ActualName = EvaluatorParameter.Name;
       }
+      foreach (var op in operators.OfType<SingleObjectiveSolutionSimilarityCalculator>()) {
+        op.QualityVariableName = "Quality";
+        op.SolutionVariableName = SolutionCreator.SymbolicExpressionTreeParameter.ActualName;
+      }
+      foreach (var op in operators.OfType<SingleObjectivePopulationDiversityAnalyzer>()) {
+        op.SimilarityCalculator = new SymbolicExpressionTreeBottomUpSimilarityCalculator();
+      }
     }