Changeset 11145 for stable/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4

Timestamp:

07/08/14 19:29:00 (10 years ago)

Author:

mkommend

Message:

#2143: Merged r10368, r10375, r10378, r10414, r10417, r10418, r10428, r10469, r10470, r11013, r11025, r11026, r11027 into stable.

Location:

stable

Files:

• . (modified) (1 prop)
• HeuristicLab.Problems.DataAnalysis.Symbolic.Regression (modified) (1 prop)
• HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression-3.4.csproj (modified) (2 diffs)
• HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/SymbolicRegressionPruningAnalyzer.cs (copied) (copied from trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/SymbolicRegressionPruningAnalyzer.cs) (3 diffs)
• HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/SymbolicRegressionPruningOperator.cs (copied) (copied from trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/SymbolicRegressionPruningOperator.cs) (4 diffs)
• HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/SymbolicRegressionSolutionImpactValuesCalculator.cs (modified) (4 diffs)

stable/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression-3.4.csproj

@@ -117 +117 @@
   </ItemGroup>
   <ItemGroup>
-    <Compile Include="MultiObjective\SymbolicRegressionMultiObjectiveValidationBestSolutionAnalyzer.cs" />
     <Compile Include="Plugin.cs" />
     <Compile Include="SingleObjective\ConstantOptimizationAnalyzer.cs" />
-    <Compile Include="SingleObjective\Evaluators\SymbolicRegressionMeanRelativeErrorEvaluator.cs" />
-    <Compile Include="SingleObjective\SymbolicRegressionSolutionsAnalyzer.cs" />
+    <Compile Include="SingleObjective\SymbolicRegressionSolutionsAnalyzer.cs" />   
+  <Compile Include="SymbolicRegressionPruningAnalyzer.cs" />    
+    <Compile Include="SingleObjective\SymbolicRegressionSingleObjectiveProblem.cs" />
+    <Compile Include="SingleObjective\SymbolicRegressionSingleObjectiveValidationBestSolutionAnalyzer.cs" />
+  <Compile Include="SingleObjective\SymbolicRegressionSingleObjectiveValidationParetoBestSolutionAnalyzer.cs" />
+    <Compile Include="SingleObjective\SymbolicRegressionSingleObjectiveTrainingBestSolutionAnalyzer.cs" />
+  <Compile Include="SingleObjective\SymbolicRegressionSingleObjectiveTrainingParetoBestSolutionAnalyzer.cs" />
+    <Compile Include="SingleObjective\SymbolicRegressionSingleObjectiveOverfittingAnalyzer.cs" />
     <Compile Include="SingleObjective\Evaluators\SymbolicRegressionLogResidualEvaluator.cs" />
-    <Compile Include="SingleObjective\SymbolicRegressionSingleObjectiveValidationParetoBestSolutionAnalyzer.cs" />
-    <Compile Include="SingleObjective\SymbolicRegressionSingleObjectiveTrainingParetoBestSolutionAnalyzer.cs" />
+    <Compile Include="SingleObjective\Evaluators\SymbolicRegressionMeanRelativeErrorEvaluator.cs" />    
     <Compile Include="SingleObjective\Evaluators\SymbolicRegressionSingleObjectiveMaxAbsoluteErrorEvaluator.cs" />
     <Compile Include="SingleObjective\Evaluators\SymbolicRegressionSingleObjectiveMeanAbsoluteErrorEvaluator.cs" />
     <Compile Include="SingleObjective\Evaluators\SymbolicRegressionConstantOptimizationEvaluator.cs" />
-    <Compile Include="SingleObjective\SymbolicRegressionSingleObjectiveOverfittingAnalyzer.cs" />
+    <Compile Include="SingleObjective\Evaluators\SymbolicRegressionSingleObjectiveEvaluator.cs" />
+    <Compile Include="SingleObjective\Evaluators\SymbolicRegressionSingleObjectiveMeanSquaredErrorEvaluator.cs" />
+    <Compile Include="SingleObjective\Evaluators\SymbolicRegressionSingleObjectivePearsonRSquaredEvaluator.cs" />
     <Compile Include="SymbolicRegressionModel.cs" />
     <Compile Include="Interfaces\ISymbolicRegressionModel.cs" />
@@ -137 +143 @@
     <Compile Include="MultiObjective\SymbolicRegressionMultiObjectiveProblem.cs" />
     <Compile Include="MultiObjective\SymbolicRegressionMultiObjectiveTrainingBestSolutionAnalyzer.cs" />
-    <Compile Include="SingleObjective\SymbolicRegressionSingleObjectiveProblem.cs" />
-    <Compile Include="SingleObjective\SymbolicRegressionSingleObjectiveValidationBestSolutionAnalyzer.cs" />
-    <Compile Include="SingleObjective\SymbolicRegressionSingleObjectiveTrainingBestSolutionAnalyzer.cs" />
     <Compile Include="MultiObjective\SymbolicRegressionMultiObjectiveEvaluator.cs" />
+    <Compile Include="MultiObjective\SymbolicRegressionMultiObjectiveValidationBestSolutionAnalyzer.cs" />
     <Compile Include="MultiObjective\SymbolicRegressionMultiObjectiveMeanSquaredErrorTreeSizeEvaluator.cs" />
     <Compile Include="MultiObjective\SymbolicRegressionMultiObjectivePearsonRSquaredTreeSizeEvaluator.cs" />
-    <Compile Include="SingleObjective\Evaluators\SymbolicRegressionSingleObjectiveEvaluator.cs" />
-    <Compile Include="SingleObjective\Evaluators\SymbolicRegressionSingleObjectiveMeanSquaredErrorEvaluator.cs" />
-    <Compile Include="SingleObjective\Evaluators\SymbolicRegressionSingleObjectivePearsonRSquaredEvaluator.cs" />
+    <Compile Include="SymbolicRegressionPruningOperator.cs" />
     <Compile Include="SymbolicRegressionSolution.cs" />
     <Compile Include="SymbolicRegressionSolutionImpactValuesCalculator.cs" />

stable/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/SymbolicRegressionPruningAnalyzer.cs

@@ -1 @@
-using System;
+#region License Information
+
+/* HeuristicLab
+ * Copyright (C) 2002-2014 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ *
+ * This file is part of HeuristicLab.
+ *
+ * HeuristicLab is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * HeuristicLab is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+#endregion
+
 using HeuristicLab.Common;
 using HeuristicLab.Core;
-using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
+using HeuristicLab.Parameters;
 using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
 
@@ -9 +31 @@
   [StorableClass]
   public sealed class SymbolicRegressionPruningAnalyzer : SymbolicDataAnalysisSingleObjectivePruningAnalyzer {
-    protected SymbolicRegressionPruningAnalyzer(SymbolicRegressionPruningAnalyzer original, Cloner cloner)
+    private const string ImpactValuesCalculatorParameterName = "ImpactValuesCalculator";
+    private const string PruningOperatorParameterName = "PruningOperator";
+    private SymbolicRegressionPruningAnalyzer(SymbolicRegressionPruningAnalyzer original, Cloner cloner)
       : base(original, cloner) {
     }
@@ -16 +40 @@
     }
 
+    [StorableConstructor]
+    private SymbolicRegressionPruningAnalyzer(bool deserializing) : base(deserializing) { }
+
     public SymbolicRegressionPruningAnalyzer() {
-      impactValuesCalculator = new SymbolicRegressionSolutionImpactValuesCalculator();
-    }
-
-    protected override ISymbolicDataAnalysisModel CreateModel(ISymbolicExpressionTree tree,
-      ISymbolicDataAnalysisExpressionTreeInterpreter interpreter, double lowerEstimationLimit = Double.MinValue,
-      double upperEstimationLimit = Double.MaxValue) {
-      return new SymbolicRegressionModel(tree, interpreter, lowerEstimationLimit, upperEstimationLimit);
+      Parameters.Add(new ValueParameter<SymbolicDataAnalysisSolutionImpactValuesCalculator>(ImpactValuesCalculatorParameterName, "The impact values calculator", new SymbolicRegressionSolutionImpactValuesCalculator()));
+      Parameters.Add(new ValueParameter<SymbolicDataAnalysisExpressionPruningOperator>(PruningOperatorParameterName, "The operator used to prune trees", new SymbolicRegressionPruningOperator()));
     }
   }

stable/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/SymbolicRegressionPruningOperator.cs

@@ -1 @@
-using System.Linq;
+#region License Information
+
+/* HeuristicLab
+ * Copyright (C) 2002-2014 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ *
+ * This file is part of HeuristicLab.
+ *
+ * HeuristicLab is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * HeuristicLab is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+#endregion
+
+using System.Linq;
 using HeuristicLab.Common;
 using HeuristicLab.Core;
@@ -10 +33 @@
   public class SymbolicRegressionPruningOperator : SymbolicDataAnalysisExpressionPruningOperator {
     private const string ImpactValuesCalculatorParameterName = "ImpactValuesCalculator";
-    private const string ImpactValuesCalculatorParameterDescription = "The impact values calculator to be used for figuring out the node impacts.";
-
-    private const string EvaluatorParameterName = "Evaluator";
-
-    public ILookupParameter<ISymbolicRegressionSingleObjectiveEvaluator> EvaluatorParameter {
-      get { return (ILookupParameter<ISymbolicRegressionSingleObjectiveEvaluator>)Parameters[EvaluatorParameterName]; }
-    }
 
     protected SymbolicRegressionPruningOperator(SymbolicRegressionPruningOperator original, Cloner cloner)
@@ -30 +46 @@
     public SymbolicRegressionPruningOperator() {
       var impactValuesCalculator = new SymbolicRegressionSolutionImpactValuesCalculator();
-      Parameters.Add(new ValueParameter<ISymbolicDataAnalysisSolutionImpactValuesCalculator>(ImpactValuesCalculatorParameterName, ImpactValuesCalculatorParameterDescription, impactValuesCalculator));
-      Parameters.Add(new LookupParameter<ISymbolicRegressionSingleObjectiveEvaluator>(EvaluatorParameterName));
+      Parameters.Add(new ValueParameter<ISymbolicDataAnalysisSolutionImpactValuesCalculator>(ImpactValuesCalculatorParameterName, "The impact values calculator to be used for figuring out the node impacts.", impactValuesCalculator));
     }
 
@@ -41 +56 @@
       var regressionModel = (IRegressionModel)model;
       var regressionProblemData = (IRegressionProblemData)ProblemData;
-      var trainingIndices = ProblemData.TrainingIndices.ToList();
+      var trainingIndices = Enumerable.Range(FitnessCalculationPartition.Start, FitnessCalculationPartition.Size);
       var estimatedValues = regressionModel.GetEstimatedValues(ProblemData.Dataset, trainingIndices); // also bounds the values
       var targetValues = ProblemData.Dataset.GetDoubleValues(regressionProblemData.TargetVariable, trainingIndices);

stable/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/SymbolicRegressionSolutionImpactValuesCalculator.cs

@@ -20 +20 @@
 #endregion
 
+using System;
 using System.Collections.Generic;
 using HeuristicLab.Common;
+using HeuristicLab.Core;
 using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
+using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
 
 namespace HeuristicLab.Problems.DataAnalysis.Symbolic.Regression {
+  [StorableClass]
+  [Item("SymbolicRegressionSolutionImpactValuesCalculator", "Calculate symbolic expression tree node impact values for regression problems.")]
   public class SymbolicRegressionSolutionImpactValuesCalculator : SymbolicDataAnalysisSolutionImpactValuesCalculator {
+    public SymbolicRegressionSolutionImpactValuesCalculator() { }
+
+    protected SymbolicRegressionSolutionImpactValuesCalculator(SymbolicRegressionSolutionImpactValuesCalculator original, Cloner cloner)
+      : base(original, cloner) { }
+    public override IDeepCloneable Clone(Cloner cloner) {
+      return new SymbolicRegressionSolutionImpactValuesCalculator(this, cloner);
+    }
+
+    [StorableConstructor]
+    protected SymbolicRegressionSolutionImpactValuesCalculator(bool deserializing) : base(deserializing) { }
     public override double CalculateReplacementValue(ISymbolicDataAnalysisModel model, ISymbolicExpressionTreeNode node, IDataAnalysisProblemData problemData, IEnumerable<int> rows) {
       var regressionModel = (ISymbolicRegressionModel)model;
@@ -34 +49 @@
 
     public override double CalculateImpactValue(ISymbolicDataAnalysisModel model, ISymbolicExpressionTreeNode node, IDataAnalysisProblemData problemData, IEnumerable<int> rows, double originalQuality = double.NaN) {
+      double impactValue, replacementValue;
+      CalculateImpactAndReplacementValues(model, node, problemData, rows, out impactValue, out replacementValue, originalQuality);
+      return impactValue;
+    }
+
+    public override void CalculateImpactAndReplacementValues(ISymbolicDataAnalysisModel model, ISymbolicExpressionTreeNode node,
+      IDataAnalysisProblemData problemData, IEnumerable<int> rows, out double impactValue, out double replacementValue,
+      double originalQuality = Double.NaN) {
       var regressionModel = (ISymbolicRegressionModel)model;
       var regressionProblemData = (IRegressionProblemData)problemData;
@@ -47 +70 @@
       }
 
-      var replacementValue = CalculateReplacementValue(regressionModel, node, regressionProblemData, rows);
+      replacementValue = CalculateReplacementValue(regressionModel, node, regressionProblemData, rows);
       var constantNode = new ConstantTreeNode(new Constant()) { Value = replacementValue };
 
@@ -63 +86 @@
       if (errorState != OnlineCalculatorError.None) newQuality = 0.0;
 
-      return originalQuality - newQuality;
+      impactValue = originalQuality - newQuality;
     }
-
   }
 }