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Changeset 11025


Ignore:
Timestamp:
06/18/14 15:27:38 (10 years ago)
Author:
bburlacu
Message:

#2143: Attempted to fix the problems described above.

Location:
trunk/sources
Files:
4 edited

Legend:

Unmodified
Added
Removed

  • trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic.Classification/3.4/SymbolicClassificationPruningOperator.cs

    r10469 r11025  
    1 using System.Linq;
     1#region License Information
     2
     3/* HeuristicLab
     4 * Copyright (C) 2002-2014 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
     5 *
     6 * This file is part of HeuristicLab.
     7 *
     8 * HeuristicLab is free software: you can redistribute it and/or modify
     9 * it under the terms of the GNU General Public License as published by
     10 * the Free Software Foundation, either version 3 of the License, or
     11 * (at your option) any later version.
     12 *
     13 * HeuristicLab is distributed in the hope that it will be useful,
     14 * but WITHOUT ANY WARRANTY; without even the implied warranty of
     15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     16 * GNU General Public License for more details.
     17 *
     18 * You should have received a copy of the GNU General Public License
     19 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
     20 */
     21
     22#endregion
     23
     24using System.Linq;
    225using HeuristicLab.Common;
    326using HeuristicLab.Core;
    4 using HeuristicLab.Data;
    527using HeuristicLab.Parameters;
    628using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
    … …  
    1234    private const string ImpactValuesCalculatorParameterName = "ImpactValuesCalculator";
    1335    private const string ModelCreatorParameterName = "ModelCreator";
    14     private const string ApplyLinearScalingParmameterName = "ApplyLinearScaling";
    1536
    1637    #region parameter properties
    … …  
    1839      get { return (ILookupParameter<ISymbolicClassificationModelCreator>)Parameters[ModelCreatorParameterName]; }
    1940    }
    20 
    21     public ILookupParameter<BoolValue> ApplyLinearScalingParameter {
    22       get { return (ILookupParameter<BoolValue>)Parameters[ApplyLinearScalingParmameterName]; }
    23     }
    24     #endregion
    25     #region properties
    26     private ISymbolicClassificationModelCreator ModelCreator { get { return ModelCreatorParameter.ActualValue; } }
    27     private BoolValue ApplyLinearScaling { get { return ApplyLinearScalingParameter.ActualValue; } }
    2841    #endregion
    2942
    … …  
    3144      : base(original, cloner) {
    3245    }
     46
    3347    public override IDeepCloneable Clone(Cloner cloner) {
    3448      return new SymbolicClassificationPruningOperator(this, cloner);
    … …  
    4458
    4559    protected override ISymbolicDataAnalysisModel CreateModel() {
    46       var model = ModelCreator.CreateSymbolicClassificationModel(SymbolicExpressionTree, Interpreter, EstimationLimits.Lower, EstimationLimits.Upper);
    47       var rows = Enumerable.Range(FitnessCalculationPartition.Start, FitnessCalculationPartition.Size);
     60      var model = ModelCreatorParameter.ActualValue.CreateSymbolicClassificationModel(SymbolicExpressionTree, Interpreter, EstimationLimits.Lower, EstimationLimits.Upper);
    4861      var problemData = (IClassificationProblemData)ProblemData;
     62      var rows = problemData.TrainingIndices;
    4963      model.RecalculateModelParameters(problemData, rows);
    5064      return model;
    … …  
    5468      var classificationModel = (IClassificationModel)model;
    5569      var classificationProblemData = (IClassificationProblemData)ProblemData;
    56       var trainingIndices = ProblemData.TrainingIndices.ToList();
     70      var trainingIndices = Enumerable.Range(FitnessCalculationPartition.Start, FitnessCalculationPartition.Size).ToArray();
    5771      var estimatedValues = classificationModel.GetEstimatedClassValues(ProblemData.Dataset, trainingIndices);
    5872      var targetValues = ProblemData.Dataset.GetDoubleValues(classificationProblemData.TargetVariable, trainingIndices);
    5973      OnlineCalculatorError errorState;
    60       var quality = OnlinePearsonsRSquaredCalculator.Calculate(targetValues, estimatedValues, out errorState);
     74      var quality = OnlineAccuracyCalculator.Calculate(targetValues, estimatedValues, out errorState);
    6175      if (errorState != OnlineCalculatorError.None) return double.NaN;
    6276      return quality;

  • trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/SymbolicRegressionPruningOperator.cs

    r10469 r11025  
    1 using System.Linq;
     1#region License Information
     2
     3/* HeuristicLab
     4 * Copyright (C) 2002-2014 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
     5 *
     6 * This file is part of HeuristicLab.
     7 *
     8 * HeuristicLab is free software: you can redistribute it and/or modify
     9 * it under the terms of the GNU General Public License as published by
     10 * the Free Software Foundation, either version 3 of the License, or
     11 * (at your option) any later version.
     12 *
     13 * HeuristicLab is distributed in the hope that it will be useful,
     14 * but WITHOUT ANY WARRANTY; without even the implied warranty of
     15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     16 * GNU General Public License for more details.
     17 *
     18 * You should have received a copy of the GNU General Public License
     19 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
     20 */
     21
     22#endregion
     23
     24using System.Linq;
    225using HeuristicLab.Common;
    326using HeuristicLab.Core;
    … …  
    1033  public class SymbolicRegressionPruningOperator : SymbolicDataAnalysisExpressionPruningOperator {
    1134    private const string ImpactValuesCalculatorParameterName = "ImpactValuesCalculator";
    12     private const string ImpactValuesCalculatorParameterDescription = "The impact values calculator to be used for figuring out the node impacts.";
    13 
    14     private const string EvaluatorParameterName = "Evaluator";
    15 
    16     public ILookupParameter<ISymbolicRegressionSingleObjectiveEvaluator> EvaluatorParameter {
    17       get { return (ILookupParameter<ISymbolicRegressionSingleObjectiveEvaluator>)Parameters[EvaluatorParameterName]; }
    18     }
    1935
    2036    protected SymbolicRegressionPruningOperator(SymbolicRegressionPruningOperator original, Cloner cloner)
    … …  
    3046    public SymbolicRegressionPruningOperator() {
    3147      var impactValuesCalculator = new SymbolicRegressionSolutionImpactValuesCalculator();
    32       Parameters.Add(new ValueParameter<ISymbolicDataAnalysisSolutionImpactValuesCalculator>(ImpactValuesCalculatorParameterName, ImpactValuesCalculatorParameterDescription, impactValuesCalculator));
    33       Parameters.Add(new LookupParameter<ISymbolicRegressionSingleObjectiveEvaluator>(EvaluatorParameterName));
     48      Parameters.Add(new ValueParameter<ISymbolicDataAnalysisSolutionImpactValuesCalculator>(ImpactValuesCalculatorParameterName, "The impact values calculator to be used for figuring out the node impacts.", impactValuesCalculator));
    3449    }
    3550
    … …  
    4156      var regressionModel = (IRegressionModel)model;
    4257      var regressionProblemData = (IRegressionProblemData)ProblemData;
    43       var trainingIndices = ProblemData.TrainingIndices.ToList();
     58      var trainingIndices = Enumerable.Range(FitnessCalculationPartition.Start, FitnessCalculationPartition.Size).ToArray();
    4459      var estimatedValues = regressionModel.GetEstimatedValues(ProblemData.Dataset, trainingIndices); // also bounds the values
    4560      var targetValues = ProblemData.Dataset.GetDoubleValues(regressionProblemData.TargetVariable, trainingIndices);

  • trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisSingleObjectivePruningAnalyzer.cs

    r11013 r11025  
    1 using System;
     1#region License Information
     2
     3/* HeuristicLab
     4 * Copyright (C) 2002-2014 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
     5 *
     6 * This file is part of HeuristicLab.
     7 *
     8 * HeuristicLab is free software: you can redistribute it and/or modify
     9 * it under the terms of the GNU General Public License as published by
     10 * the Free Software Foundation, either version 3 of the License, or
     11 * (at your option) any later version.
     12 *
     13 * HeuristicLab is distributed in the hope that it will be useful,
     14 * but WITHOUT ANY WARRANTY; without even the implied warranty of
     15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     16 * GNU General Public License for more details.
     17 *
     18 * You should have received a copy of the GNU General Public License
     19 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
     20 */
     21
     22#endregion
     23
     24using System;
    225using System.Linq;
    326using HeuristicLab.Analysis;
    … …  
    2952    private const string PopulationSizeParameterName = "PopulationSize";
    3053    #endregion
     54
    3155    #region private members
    3256    private DataReducer prunedSubtreesReducer;
    … …  
    3660    private EmptyOperator emptyOp;
    3761    #endregion
     62
    3863    #region parameter properties
    3964    public IValueParameter<SymbolicDataAnalysisExpressionPruningOperator> PruningOperatorParameter {
    … …  
    4974      get { return (ILookupParameter<IRandom>)Parameters[RandomParameterName]; }
    5075    }
    51     private ILookupParameter<IDataAnalysisProblemData> ProblemDataParameter {
    52       get { return (ILookupParameter<IDataAnalysisProblemData>)Parameters[ProblemDataParameterName]; }
    53     }
    5476    public IValueParameter<IntValue> UpdateIntervalParameter {
    5577      get { return (IValueParameter<IntValue>)Parameters[UpdateIntervalParameterName]; }
    … …  
    6890    }
    6991    #endregion
     92
    7093    #region properties
    7194    protected SymbolicDataAnalysisExpressionPruningOperator PruningOperator { get { return PruningOperatorParameter.Value; } }
    72     protected IDataAnalysisProblemData ProblemData { get { return ProblemDataParameter.ActualValue; } }
    7395    protected IntValue UpdateInterval { get { return UpdateIntervalParameter.Value; } }
    7496    protected IntValue UpdateCounter { get { return UpdateCounterParameter.Value; } }
    7597    protected DoubleRange PopulationSlice { get { return PopulationSliceParameter.Value; } }
    7698    protected DoubleValue PruningProbability { get { return PruningProbabilityParameter.Value; } }
    77     protected IRandom Random { get { return RandomParameter.ActualValue; } }
    78     protected DoubleValue NodeImpactThreshold { get { return NodeImpactThresholdParameter.Value; } }
    79     protected BoolValue PruneOnlyZeroImpactNodes { get { return PruneOnlyZeroImpactNodesParameter.Value; } }
    80     #endregion
     99
     100    protected bool PruneOnlyZeroImpactNodes {
     101      get { return PruneOnlyZeroImpactNodesParameter.Value.Value; }
     102      set { PruneOnlyZeroImpactNodesParameter.Value.Value = value; }
     103    }
     104    protected double NodeImpactThreshold {
     105      get { return NodeImpactThresholdParameter.Value.Value; }
     106      set { NodeImpactThresholdParameter.Value.Value = value; }
     107    }
     108    #endregion
     109
    81110    #region IStatefulItem members
    82111    public override void InitializeState() {
    … …  
    92121    [StorableConstructor]
    93122    protected SymbolicDataAnalysisSingleObjectivePruningAnalyzer(bool deserializing) : base(deserializing) { }
     123
    94124    protected SymbolicDataAnalysisSingleObjectivePruningAnalyzer(SymbolicDataAnalysisSingleObjectivePruningAnalyzer original, Cloner cloner)
    95125      : base(original, cloner) {
    … …  
    125155    }
    126156
    127     private void InitializeOperators() {
    128       prunedSubtreesReducer = new DataReducer();
    129       prunedSubtreesReducer.ParameterToReduce.ActualName = PruningOperator.PrunedSubtreesParameter.ActualName;
    130       prunedSubtreesReducer.ReductionOperation.Value = new ReductionOperation(ReductionOperations.Sum); // sum all the pruned subtrees parameter values
    131       prunedSubtreesReducer.TargetOperation.Value = new ReductionOperation(ReductionOperations.Assign); // asign the sum to the target parameter
    132       prunedSubtreesReducer.TargetParameter.ActualName = TotalNumberOfPrunedSubtreesParameterName;
    133 
    134       prunedTreesReducer = new DataReducer();
    135       prunedTreesReducer.ParameterToReduce.ActualName = PruningOperator.PrunedTreesParameter.ActualName;
    136       prunedTreesReducer.ReductionOperation.Value = new ReductionOperation(ReductionOperations.Sum);
    137       prunedTreesReducer.TargetOperation.Value = new ReductionOperation(ReductionOperations.Assign);
    138       prunedTreesReducer.TargetParameter.ActualName = TotalNumberOfPrunedTreesParameterName;
    139 
    140       valuesCollector = new DataTableValuesCollector();
    141       valuesCollector.CollectedValues.Add(new LookupParameter<IntValue>(TotalNumberOfPrunedSubtreesParameterName));
    142       valuesCollector.CollectedValues.Add(new LookupParameter<IntValue>(TotalNumberOfPrunedTreesParameterName));
    143       valuesCollector.DataTableParameter.ActualName = "Population pruning";
    144 
    145       resultsCollector = new ResultsCollector();
    146       resultsCollector.CollectedValues.Add(new LookupParameter<DataTable>("Population pruning"));
    147       resultsCollector.ResultsParameter.ActualName = ResultsParameterName;
    148 
    149       emptyOp = new EmptyOperator();
    150     }
    151 
    152157    //
    153158    /// <summary>
    … …  
    176181
    177182      var subscopes = ExecutionContext.Scope.SubScopes;
     183      var random = RandomParameter.ActualValue;
    178184
    179185      for (int i = 0; i < subscopes.Count; ++i) {
    180186        IOperator op;
    181         if (range.Start <= i && i < range.End && Random.NextDouble() <= PruningProbability.Value)
     187        if (range.Start <= i && i < range.End && random.NextDouble() <= PruningProbability.Value)
    182188          op = PruningOperator;
    183189        else op = emptyOp;
    … …  
    204210      return new OperationCollection { prune, reducePrunedSubtrees, reducePrunedTrees, collectValues, collectResults, base.Apply() };
    205211    }
     212
     213    private void InitializeOperators() {
     214      prunedSubtreesReducer = new DataReducer();
     215      prunedSubtreesReducer.ParameterToReduce.ActualName = PruningOperator.PrunedSubtreesParameter.ActualName;
     216      prunedSubtreesReducer.ReductionOperation.Value = new ReductionOperation(ReductionOperations.Sum); // sum all the pruned subtrees parameter values
     217      prunedSubtreesReducer.TargetOperation.Value = new ReductionOperation(ReductionOperations.Assign); // asign the sum to the target parameter
     218      prunedSubtreesReducer.TargetParameter.ActualName = TotalNumberOfPrunedSubtreesParameterName;
     219
     220      prunedTreesReducer = new DataReducer();
     221      prunedTreesReducer.ParameterToReduce.ActualName = PruningOperator.PrunedTreesParameter.ActualName;
     222      prunedTreesReducer.ReductionOperation.Value = new ReductionOperation(ReductionOperations.Sum);
     223      prunedTreesReducer.TargetOperation.Value = new ReductionOperation(ReductionOperations.Assign);
     224      prunedTreesReducer.TargetParameter.ActualName = TotalNumberOfPrunedTreesParameterName;
     225
     226      valuesCollector = new DataTableValuesCollector();
     227      valuesCollector.CollectedValues.Add(new LookupParameter<IntValue>(TotalNumberOfPrunedSubtreesParameterName));
     228      valuesCollector.CollectedValues.Add(new LookupParameter<IntValue>(TotalNumberOfPrunedTreesParameterName));
     229      valuesCollector.DataTableParameter.ActualName = "Population pruning";
     230
     231      resultsCollector = new ResultsCollector();
     232      resultsCollector.CollectedValues.Add(new LookupParameter<DataTable>("Population pruning"));
     233      resultsCollector.ResultsParameter.ActualName = ResultsParameterName;
     234
     235      emptyOp = new EmptyOperator();
     236    }
    206237  }
    207238}

  • trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisExpressionPruningOperator.cs

    r10469 r11025  
    8585    }
    8686    #endregion
     87
    8788    #region properties
    8889    protected IDataAnalysisProblemData ProblemData { get { return ProblemDataParameter.ActualValue; } }
    8990    protected ISymbolicDataAnalysisSolutionImpactValuesCalculator ImpactValuesCalculator { get { return ImpactValuesCalculatorParameter.Value; } }
    9091    protected IntRange FitnessCalculationPartition { get { return FitnessCalculationPartitionParameter.ActualValue; } }
    91     protected BoolValue PruneOnlyZeroImpactNodes { get { return PruneOnlyZeroImpactNodesParameter.Value; } }
    92     protected DoubleValue NodeImpactThreshold { get { return NodeImpactThresholdParameter.Value; } }
     92    protected bool PruneOnlyZeroImpactNodes {
     93      get { return PruneOnlyZeroImpactNodesParameter.Value.Value; }
     94      set { PruneOnlyZeroImpactNodesParameter.Value.Value = value; }
     95    }
     96    protected double NodeImpactThreshold {
     97      get { return NodeImpactThresholdParameter.Value.Value; }
     98      set { NodeImpactThresholdParameter.Value.Value = value; }
     99    }
    93100    protected ISymbolicExpressionTree SymbolicExpressionTree { get { return SymbolicExpressionTreeParameter.ActualValue; } }
    94101    protected DoubleValue Quality { get { return QualityParameter.ActualValue; } }
    … …  
    117124      #endregion
    118125    }
     126
     127    protected abstract ISymbolicDataAnalysisModel CreateModel();
     128
     129    protected abstract double Evaluate(IDataAnalysisModel model);
     130
    119131    public override IOperation Apply() {
    120132      var model = CreateModel();
    121133      var nodes = SymbolicExpressionTree.Root.GetSubtree(0).GetSubtree(0).IterateNodesPrefix().ToList();
    122       var rows = Enumerable.Range(FitnessCalculationPartition.Start, FitnessCalculationPartition.Size).ToList();
    123 
     134      var rows = Enumerable.Range(FitnessCalculationPartition.Start, FitnessCalculationPartition.Size);
    124135      var prunedSubtrees = 0;
    125136      var prunedTrees = 0;
    … …  
    134145        ImpactValuesCalculator.CalculateImpactAndReplacementValues(model, node, ProblemData, rows, out impactValue, out replacementValue, quality);
    135146
    136         if (PruneOnlyZeroImpactNodes.Value && (!impactValue.IsAlmost(0.0))) continue;
    137         else if (NodeImpactThreshold.Value < impactValue) continue;
     147        if (PruneOnlyZeroImpactNodes) {
     148          if (!impactValue.IsAlmost(0.0)) continue;
     149        } else if (NodeImpactThreshold < impactValue) {
     150          continue;
     151        }
    138152
    139         var constantNode = new ConstantTreeNode(new Constant()) { Value = replacementValue };
     153        var constantNode = (ConstantTreeNode)node.Grammar.GetSymbol("Constant").CreateTreeNode();
     154        constantNode.Value = replacementValue;
     155
    140156        ReplaceWithConstant(node, constantNode);
    141157        i += node.GetLength() - 1; // skip subtrees under the node that was folded
    … …  
    152168      return base.Apply();
    153169    }
     170
    154171    private static void ReplaceWithConstant(ISymbolicExpressionTreeNode original, ISymbolicExpressionTreeNode replacement) {
    155172      var parent = original.Parent;
    … …  
    158175      parent.InsertSubtree(i, replacement);
    159176    }
    160     protected abstract ISymbolicDataAnalysisModel CreateModel();
    161     protected abstract double Evaluate(IDataAnalysisModel model);
    162177  }
    163178}
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