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Ignore:
Timestamp:
08/02/12 18:25:00 (12 years ago)
Author:
gkronber
Message:

#1423 moved LM-BFGS implementation from data-analysis into the gradient descent algorithm plugin.

Location:
trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4
Files:
17 edited

Legend:

Unmodified
Added
Removed

  • trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/GaussianProcess/CovarianceLinear.cs

    r8371 r8401  
    1 using System;
     1#region License Information
     2/* HeuristicLab
     3 * Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
     4 *
     5 * This file is part of HeuristicLab.
     6 *
     7 * HeuristicLab is free software: you can redistribute it and/or modify
     8 * it under the terms of the GNU General Public License as published by
     9 * the Free Software Foundation, either version 3 of the License, or
     10 * (at your option) any later version.
     11 *
     12 * HeuristicLab is distributed in the hope that it will be useful,
     13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
     14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     15 * GNU General Public License for more details.
     16 *
     17 * You should have received a copy of the GNU General Public License
     18 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
     19 */
     20#endregion
     21
     22using System;
    223using HeuristicLab.Common;
    324using HeuristicLab.Core;

  • trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/GaussianProcess/CovarianceSEard.cs

    r8371 r8401  
    1 using System;
     1#region License Information
     2/* HeuristicLab
     3 * Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
     4 *
     5 * This file is part of HeuristicLab.
     6 *
     7 * HeuristicLab is free software: you can redistribute it and/or modify
     8 * it under the terms of the GNU General Public License as published by
     9 * the Free Software Foundation, either version 3 of the License, or
     10 * (at your option) any later version.
     11 *
     12 * HeuristicLab is distributed in the hope that it will be useful,
     13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
     14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     15 * GNU General Public License for more details.
     16 *
     17 * You should have received a copy of the GNU General Public License
     18 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
     19 */
     20#endregion
     21
     22using System;
    223using System.Linq;
    324using HeuristicLab.Common;

  • trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/GaussianProcess/CovarianceSEiso.cs

    r8371 r8401  
    1 using System;
     1#region License Information
     2/* HeuristicLab
     3 * Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
     4 *
     5 * This file is part of HeuristicLab.
     6 *
     7 * HeuristicLab is free software: you can redistribute it and/or modify
     8 * it under the terms of the GNU General Public License as published by
     9 * the Free Software Foundation, either version 3 of the License, or
     10 * (at your option) any later version.
     11 *
     12 * HeuristicLab is distributed in the hope that it will be useful,
     13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
     14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     15 * GNU General Public License for more details.
     16 *
     17 * You should have received a copy of the GNU General Public License
     18 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
     19 */
     20#endregion
     21
     22using System;
    223using System.Linq;
    324using HeuristicLab.Common;

  • trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/GaussianProcess/GaussianProcessHyperparameterInitializer.cs

    r8396 r8401  
    2323using HeuristicLab.Common;
    2424using HeuristicLab.Core;
    25 using HeuristicLab.Data;
    2625using HeuristicLab.Encodings.RealVectorEncoding;
    27 using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
    2826using HeuristicLab.Operators;
    2927using HeuristicLab.Parameters;

  • trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/GaussianProcess/GaussianProcessModelCreator.cs

    r8396 r8401  
    2424using HeuristicLab.Data;
    2525using HeuristicLab.Encodings.RealVectorEncoding;
    26 using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
    2726using HeuristicLab.Operators;
    2827using HeuristicLab.Parameters;
    2928using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
    30 using HeuristicLab.Problems.DataAnalysis;
    3129
    3230namespace HeuristicLab.Algorithms.DataAnalysis {

  • trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/GaussianProcess/GaussianProcessRegression.cs

    r8396 r8401  
    2424using System.Collections.Generic;
    2525using System.Linq;
    26 using HeuristicLab.Analysis;
     26using HeuristicLab.Algorithms.GradientDescent;
    2727using HeuristicLab.Common;
    2828using HeuristicLab.Core;
    2929using HeuristicLab.Data;
    30 using HeuristicLab.Encodings.RealVectorEncoding;
    3130using HeuristicLab.Operators;
    3231using HeuristicLab.Optimization;
    … …  
    3534using HeuristicLab.PluginInfrastructure;
    3635using HeuristicLab.Problems.DataAnalysis;
    37 using HeuristicLab.Random;
    3836
    3937namespace HeuristicLab.Algorithms.DataAnalysis {

  • trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/GaussianProcess/GaussianProcessRegressionModelCreator.cs

    r8396 r8401  
    2020#endregion
    2121
    22 using System.Collections.Generic;
    2322using System.Linq;
    2423using HeuristicLab.Common;
    … …  
    2625using HeuristicLab.Data;
    2726using HeuristicLab.Encodings.RealVectorEncoding;
    28 using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
    29 using HeuristicLab.Operators;
    3027using HeuristicLab.Parameters;
    3128using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;

  • trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/GaussianProcess/GaussianProcessRegressionSolutionCreator.cs

    r8375 r8401  
    2020#endregion
    2121
    22 using System.Collections.Generic;
    23 using System.Linq;
    2422using HeuristicLab.Common;
    2523using HeuristicLab.Core;
    2624using HeuristicLab.Data;
    27 using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
    2825using HeuristicLab.Operators;
    2926using HeuristicLab.Optimization;

  • trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/GaussianProcess/ICovarianceFunction.cs

    r8371 r8401  
    1 
     1#region License Information
     2/* HeuristicLab
     3 * Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
     4 *
     5 * This file is part of HeuristicLab.
     6 *
     7 * HeuristicLab is free software: you can redistribute it and/or modify
     8 * it under the terms of the GNU General Public License as published by
     9 * the Free Software Foundation, either version 3 of the License, or
     10 * (at your option) any later version.
     11 *
     12 * HeuristicLab is distributed in the hope that it will be useful,
     13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
     14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     15 * GNU General Public License for more details.
     16 *
     17 * You should have received a copy of the GNU General Public License
     18 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
     19 */
     20#endregion
    221
    322using HeuristicLab.Core;

  • trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/GaussianProcess/IMeanFunction.cs

    r8371 r8401  
    1 
     1#region License Information
     2/* HeuristicLab
     3 * Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
     4 *
     5 * This file is part of HeuristicLab.
     6 *
     7 * HeuristicLab is free software: you can redistribute it and/or modify
     8 * it under the terms of the GNU General Public License as published by
     9 * the Free Software Foundation, either version 3 of the License, or
     10 * (at your option) any later version.
     11 *
     12 * HeuristicLab is distributed in the hope that it will be useful,
     13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
     14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     15 * GNU General Public License for more details.
     16 *
     17 * You should have received a copy of the GNU General Public License
     18 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
     19 */
     20#endregion
    221using HeuristicLab.Core;
    322

  • trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/GaussianProcess/MeanConst.cs

    r8371 r8401  
    1 
     1#region License Information
     2/* HeuristicLab
     3 * Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
     4 *
     5 * This file is part of HeuristicLab.
     6 *
     7 * HeuristicLab is free software: you can redistribute it and/or modify
     8 * it under the terms of the GNU General Public License as published by
     9 * the Free Software Foundation, either version 3 of the License, or
     10 * (at your option) any later version.
     11 *
     12 * HeuristicLab is distributed in the hope that it will be useful,
     13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
     14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     15 * GNU General Public License for more details.
     16 *
     17 * You should have received a copy of the GNU General Public License
     18 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
     19 */
     20#endregion
     21
    222using System;
    323using System.Linq;

  • trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/GaussianProcess/MeanLinear.cs

    r8371 r8401  
    1 
     1#region License Information
     2/* HeuristicLab
     3 * Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
     4 *
     5 * This file is part of HeuristicLab.
     6 *
     7 * HeuristicLab is free software: you can redistribute it and/or modify
     8 * it under the terms of the GNU General Public License as published by
     9 * the Free Software Foundation, either version 3 of the License, or
     10 * (at your option) any later version.
     11 *
     12 * HeuristicLab is distributed in the hope that it will be useful,
     13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
     14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     15 * GNU General Public License for more details.
     16 *
     17 * You should have received a copy of the GNU General Public License
     18 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
     19 */
     20#endregion
    221using System;
    322using System.Linq;

  • trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/GaussianProcess/MeanZero.cs

    r8371 r8401  
    1 
     1#region License Information
     2/* HeuristicLab
     3 * Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
     4 *
     5 * This file is part of HeuristicLab.
     6 *
     7 * HeuristicLab is free software: you can redistribute it and/or modify
     8 * it under the terms of the GNU General Public License as published by
     9 * the Free Software Foundation, either version 3 of the License, or
     10 * (at your option) any later version.
     11 *
     12 * HeuristicLab is distributed in the hope that it will be useful,
     13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
     14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     15 * GNU General Public License for more details.
     16 *
     17 * You should have received a copy of the GNU General Public License
     18 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
     19 */
     20#endregion
    221using System;
    322using System.Linq;

  • trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/GaussianProcess/Util.cs

    r8371 r8401  
    1 
     1#region License Information
     2/* HeuristicLab
     3 * Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
     4 *
     5 * This file is part of HeuristicLab.
     6 *
     7 * HeuristicLab is free software: you can redistribute it and/or modify
     8 * it under the terms of the GNU General Public License as published by
     9 * the Free Software Foundation, either version 3 of the License, or
     10 * (at your option) any later version.
     11 *
     12 * HeuristicLab is distributed in the hope that it will be useful,
     13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
     14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     15 * GNU General Public License for more details.
     16 *
     17 * You should have received a copy of the GNU General Public License
     18 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
     19 */
     20#endregion
    221
    322using System;

  • trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/HeuristicLab.Algorithms.DataAnalysis-3.4.csproj

    r8396 r8401  
    113113      <RequiredTargetFramework>3.5</RequiredTargetFramework>
    114114    </Reference>
    115     <Reference Include="System.Data" />
    116115    <Reference Include="System.Drawing" />
    117     <Reference Include="System.Xml" />
    118116  </ItemGroup>
    119117  <ItemGroup>
    … …  
    122120    </Compile>
    123121    <Compile Include="FixedDataAnalysisAlgorithm.cs" />
    124     <Compile Include="GaussianProcess\Lbfgs.cs" />
    125     <Compile Include="GaussianProcess\LbfgsInitializer.cs" />
    126     <Compile Include="GaussianProcess\LbfgsState.cs" />
    127     <Compile Include="GaussianProcess\LbfgsUpdateResults.cs" />
    128     <Compile Include="GaussianProcess\LbfgsMakeStep.cs" />
    129     <Compile Include="GaussianProcess\LbfgsAnalyzer.cs" />
    130122    <Compile Include="GaussianProcess\GaussianProcessHyperparameterInitializer.cs" />
    131123    <Compile Include="GaussianProcess\GaussianProcessRegressionSolutionCreator.cs" />
    … …  
    214206  </ItemGroup>
    215207  <ItemGroup>
     208    <ProjectReference Include="..\..\HeuristicLab.Algorithms.GradientDescent\3.3\HeuristicLab.Algorithms.GradientDescent.csproj">
     209      <Project>{1256B945-EEA9-4BE4-9880-76B5B113F089}</Project>
     210      <Name>HeuristicLab.Algorithms.GradientDescent</Name>
     211      <Private>False</Private>
     212    </ProjectReference>
    216213    <ProjectReference Include="..\..\HeuristicLab.Analysis\3.3\HeuristicLab.Analysis-3.3.csproj">
    217214      <Project>{887425B4-4348-49ED-A457-B7D2C26DDBF9}</Project>
    … …  
    247244      <Project>{BB6D334A-4BB6-4674-9883-31A6EBB32CAB}</Project>
    248245      <Name>HeuristicLab.Encodings.RealVectorEncoding-3.3</Name>
     246      <Private>False</Private>
    249247    </ProjectReference>
    250248    <ProjectReference Include="..\..\HeuristicLab.Encodings.SymbolicExpressionTreeEncoding\3.4\HeuristicLab.Encodings.SymbolicExpressionTreeEncoding-3.4.csproj">
    … …  
    256254      <Project>{23DA7FF4-D5B8-41B6-AA96-F0561D24F3EE}</Project>
    257255      <Name>HeuristicLab.Operators-3.3</Name>
    258     </ProjectReference>
    259     <ProjectReference Include="..\..\HeuristicLab.Optimization.Operators\3.3\HeuristicLab.Optimization.Operators-3.3.csproj">
    260       <Project>{25087811-F74C-4128-BC86-8324271DA13E}</Project>
    261       <Name>HeuristicLab.Optimization.Operators-3.3</Name>
     256      <Private>False</Private>
    262257    </ProjectReference>
    263258    <ProjectReference Include="..\..\HeuristicLab.Optimization\3.3\HeuristicLab.Optimization-3.3.csproj">
    … …  
    304299      <Project>{3540E29E-4793-49E7-8EE2-FEA7F61C3994}</Project>
    305300      <Name>HeuristicLab.Problems.Instances-3.3</Name>
    306       <Private>False</Private>
    307     </ProjectReference>
    308     <ProjectReference Include="..\..\HeuristicLab.Problems.TestFunctions\3.3\HeuristicLab.Problems.TestFunctions-3.3.csproj">
    309       <Project>{88B9B0E3-344E-4196-82A3-0F9732506FE8}</Project>
    310       <Name>HeuristicLab.Problems.TestFunctions-3.3</Name>
    311     </ProjectReference>
    312     <ProjectReference Include="..\..\HeuristicLab.Random\3.3\HeuristicLab.Random-3.3.csproj">
    313       <Project>{F4539FB6-4708-40C9-BE64-0A1390AEA197}</Project>
    314       <Name>HeuristicLab.Random-3.3</Name>
    315301      <Private>False</Private>
    316302    </ProjectReference>

  • trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/NeuralNetwork/NeuralNetworkRegression.cs

    r8139 r8401  
    2626using HeuristicLab.Core;
    2727using HeuristicLab.Data;
    28 using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
    2928using HeuristicLab.Optimization;
     29using HeuristicLab.Parameters;
    3030using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
    3131using HeuristicLab.Problems.DataAnalysis;
    32 using HeuristicLab.Problems.DataAnalysis.Symbolic;
    33 using HeuristicLab.Problems.DataAnalysis.Symbolic.Regression;
    34 using HeuristicLab.Parameters;
    3532
    3633namespace HeuristicLab.Algorithms.DataAnalysis {

  • trunk/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/Plugin.cs.frame

    r8399 r8401  
    2929  [PluginFile("HeuristicLab.Algorithms.DataAnalysis-3.4.dll", PluginFileType.Assembly)]
    3030  [PluginDependency("HeuristicLab.ALGLIB", "3.5.0")]
     31  [PluginDependency("HeuristicLab.Algorithms.GradientDescent", "3.3")]
    3132  [PluginDependency("HeuristicLab.Analysis", "3.3")]
    32   [PluginDependency("HeuristicLab.LibSVM", "1.6.3")]
    3333  [PluginDependency("HeuristicLab.Collections", "3.3")]
    3434  [PluginDependency("HeuristicLab.Common", "3.3")]
    … …  
    3636  [PluginDependency("HeuristicLab.Core", "3.3")]
    3737  [PluginDependency("HeuristicLab.Data", "3.3")]
     38  [PluginDependency("HeuristicLab.Encodings.RealVectorEncoding", "3.3")]
    3839  [PluginDependency("HeuristicLab.Encodings.SymbolicExpressionTreeEncoding", "3.4")]
    39   [PluginDependency("HeuristicLab.Encodings.RealVectorEncoding", "3.3")]
    4040  [PluginDependency("HeuristicLab.Operators", "3.3")]
    4141  [PluginDependency("HeuristicLab.Optimization", "3.3")]
    … …  
    4646  [PluginDependency("HeuristicLab.Problems.DataAnalysis.Symbolic.Classification", "3.4")]
    4747  [PluginDependency("HeuristicLab.Problems.DataAnalysis.Symbolic.Regression", "3.4")]
    48   [PluginDependency("HeuristicLab.Problems.TestFunctions", "3.3")]
    49   [PluginDependency("HeuristicLab.Random", "3.3")]
     48  [PluginDependency("HeuristicLab.LibSVM", "1.6.3")]
    5049  public class HeuristicLabAlgorithmsDataAnalysisPlugin : PluginBase {
    5150  }
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