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Changeset 7035


Ignore:
Timestamp:
11/22/11 13:29:11 (13 years ago)
Author:
bburlacu
Message:

#1682: Added base class SymbolicDataAnalysisExpressionCrossover for data analysis crossovers (crossovers that also perform evaluation for computing distance metrics). Made adjustments to other classes to accommodate the new crossovers (some methods became more general and were moved), changes affect CutPoint.cs, SubtreeCrossover.cs, SymbolicExpressionTreeNode.cs and others.

Location:
branches/gp-crossover
Files:
3 added
5 edited

Legend:

Unmodified
Added
Removed

  • branches/gp-crossover/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/Crossovers/SubtreeCrossover.cs

    r6803 r7035  
    9494      // calculate the max length and depth that the inserted branch can have
    9595      int maxInsertedBranchLength = maxTreeLength - (parent0.Length - childLength);
    96       int maxInsertedBranchDepth = maxTreeDepth - GetBranchLevel(parent0.Root, crossoverPoint0.Parent);
     96      int maxInsertedBranchDepth = maxTreeDepth - parent0.Root.GetBranchLevel(crossoverPoint0.Parent);
    9797
    9898      List<ISymbolicExpressionTreeNode> allowedBranches = new List<ISymbolicExpressionTreeNode>();
    9999      parent1.Root.ForEachNodePostfix((n) => {
    100100        if (n.GetLength() <= maxInsertedBranchLength &&
    101             n.GetDepth() <= maxInsertedBranchDepth &&
    102             IsMatchingPointType(crossoverPoint0, n))
     101            n.GetDepth() <= maxInsertedBranchDepth && crossoverPoint0.IsMatchingPointType(n))
    103102          allowedBranches.Add(n);
    104103      });
    105104      // empty branch
    106       if (IsMatchingPointType(crossoverPoint0, null)) allowedBranches.Add(null);
     105      if (crossoverPoint0.IsMatchingPointType(null)) allowedBranches.Add(null);
    107106
    108107      if (allowedBranches.Count == 0) {
    … …  
    125124        }
    126125        return parent0;
    127       }
    128     }
    129 
    130     private static bool IsMatchingPointType(CutPoint cutPoint, ISymbolicExpressionTreeNode newChild) {
    131       var parent = cutPoint.Parent;
    132       if (newChild == null) {
    133         // make sure that one subtree can be removed and that only the last subtree is removed
    134         return parent.Grammar.GetMinimumSubtreeCount(parent.Symbol) < parent.SubtreeCount &&
    135           cutPoint.ChildIndex == parent.SubtreeCount - 1;
    136       } else {
    137         // check syntax constraints of direct parent - child relation
    138         if (!parent.Grammar.ContainsSymbol(newChild.Symbol) ||
    139             !parent.Grammar.IsAllowedChildSymbol(parent.Symbol, newChild.Symbol, cutPoint.ChildIndex)) return false;
    140 
    141         bool result = true;
    142         // check point type for the whole branch
    143         newChild.ForEachNodePostfix((n) => {
    144           result =
    145             result &&
    146             parent.Grammar.ContainsSymbol(n.Symbol) &&
    147             n.SubtreeCount >= parent.Grammar.GetMinimumSubtreeCount(n.Symbol) &&
    148             n.SubtreeCount <= parent.Grammar.GetMaximumSubtreeCount(n.Symbol);
    149         });
    150         return result;
    151126      }
    152127    }
    … …  
    226201      }
    227202    }
    228 
    229     private static int GetBranchLevel(ISymbolicExpressionTreeNode root, ISymbolicExpressionTreeNode point) {
    230       if (root == point) return 0;
    231       foreach (var subtree in root.Subtrees) {
    232         int branchLevel = GetBranchLevel(subtree, point);
    233         if (branchLevel < int.MaxValue) return 1 + branchLevel;
    234       }
    235       return int.MaxValue;
    236     }
    237203  }
    238204}

  • branches/gp-crossover/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/CutPoint.cs

    r5916 r7035  
    2222
    2323namespace HeuristicLab.Encodings.SymbolicExpressionTreeEncoding {
    24   internal class CutPoint {
     24  public class CutPoint {
    2525    public ISymbolicExpressionTreeNode Parent { get; set; }
    2626    public ISymbolicExpressionTreeNode Child { get; set; }
    … …  
    3939      this.Child = null;
    4040    }
     41
     42    public bool IsMatchingPointType(ISymbolicExpressionTreeNode newChild) {
     43      var parent = this.Parent;
     44      if (newChild == null) {
     45        // make sure that one subtree can be removed and that only the last subtree is removed
     46        return parent.Grammar.GetMinimumSubtreeCount(parent.Symbol) < parent.SubtreeCount &&
     47          this.ChildIndex == parent.SubtreeCount - 1;
     48      } else {
     49        // check syntax constraints of direct parent - child relation
     50        if (!parent.Grammar.ContainsSymbol(newChild.Symbol) ||
     51            !parent.Grammar.IsAllowedChildSymbol(parent.Symbol, newChild.Symbol, this.ChildIndex))
     52          return false;
     53
     54        bool result = true;
     55        // check point type for the whole branch
     56        newChild.ForEachNodePostfix((n) => {
     57          result =
     58            result &&
     59            parent.Grammar.ContainsSymbol(n.Symbol) &&
     60            n.SubtreeCount >= parent.Grammar.GetMinimumSubtreeCount(n.Symbol) &&
     61            n.SubtreeCount <= parent.Grammar.GetMaximumSubtreeCount(n.Symbol);
     62        });
     63        return result;
     64      }
     65    }
    4166  }
    4267}

  • branches/gp-crossover/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/Interfaces/ISymbolicExpressionTreeNode.cs

    r6803 r7035  
    3232    int GetDepth();
    3333    int GetLength();
     34    int GetBranchLevel(ISymbolicExpressionTreeNode child);
    3435
    3536    IEnumerable<ISymbolicExpressionTreeNode> IterateNodesPostfix();

  • branches/gp-crossover/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/SymbolicExpressionTreeNode.cs

    r6803 r7035  
    125125    }
    126126
     127    public int GetBranchLevel(ISymbolicExpressionTreeNode child) {
     128      return GetBranchLevel(this, child);
     129    }
     130
     131    private static int GetBranchLevel(ISymbolicExpressionTreeNode root, ISymbolicExpressionTreeNode point) {
     132      if (root == point)
     133        return 0;
     134      foreach (var subtree in root.Subtrees) {
     135        int branchLevel = GetBranchLevel(subtree, point);
     136        if (branchLevel < int.MaxValue)
     137          return 1 + branchLevel;
     138      }
     139      return int.MaxValue;
     140    }
     141
    127142    public virtual void ResetLocalParameters(IRandom random) { }
    128143    public virtual void ShakeLocalParameters(IRandom random, double shakingFactor) { }

  • branches/gp-crossover/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj

    r6888 r7035  
    121121    <Compile Include="Analyzers\SymbolicDataAnalysisVariableFrequencyAnalyzer.cs" />
    122122    <Compile Include="Analyzers\SymbolicDataAnalysisAlleleFrequencyAnalyzer.cs" />
     123    <Compile Include="Crossovers\SymbolicDataAnalysisExpressionSemanticSimilarityCrossover.cs" />
     124    <Compile Include="Crossovers\SymbolicDataAnalysisExpressionCrossover.cs" />
     125    <Compile Include="Crossovers\SymbolicDataAnalysisExpressionProbabilisticFunctionalCrossover.cs" />
    123126    <Compile Include="SymbolicDataAnalysisExpressionFullTreeCreator.cs" />
    124127    <Compile Include="Plugin.cs" />
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