Changeset 12453

Timestamp:

06/16/15 12:23:18 (9 years ago)

Author:

mkommend

Message:

#2276: Changes to reduce the memory consumption of GP.

Location:

branches/HeuristicLab.DatasetRefactor/sources

Files:

• HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/Crossovers/SubtreeCrossover.cs (modified) (1 diff)
• HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/Grammars/SymbolicExpressionGrammarBase.cs (modified) (2 diffs)
• HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/SymbolicExpressionTreeNode.cs (modified) (3 diffs)
• HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/SymbolicExpressionTreeTopLevelNode.cs (modified) (1 diff)
• HeuristicLab.Problems.DataAnalysis/3.4/Implementation/Regression/RegressionSolution.cs (modified) (1 diff)

branches/HeuristicLab.DatasetRefactor/sources/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/Crossovers/SubtreeCrossover.cs

@@ -135 +135 @@
       parent0.Root.ForEachNodePostfix((n) => {
         if (n.SubtreeCount > 0 && n != parent0.Root) {
-          foreach (var child in n.Subtrees) {
+          //avoid linq to reduce memory pressure
+          for (int i = 0; i < n.SubtreeCount; i++) {
+            var child = n.GetSubtree(i);
             if (child.GetLength() <= maxBranchLength &&
                 child.GetDepth() <= maxBranchDepth) {

branches/HeuristicLab.DatasetRefactor/sources/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/Grammars/SymbolicExpressionGrammarBase.cs

@@ -338 +338 @@
         List<string> temp;
         if (allowedChildSymbols.TryGetValue(parent.Name, out temp)) {
-          if (temp.SelectMany(s => GetSymbol(s).Flatten()).Any(s => s.Name == child.Name)) {
-            cachedIsAllowedChildSymbol.Add(key, true);
-            return true;
+          for (int i = 0; i < temp.Count; i++) {
+            var symbol = GetSymbol(temp[i]);
+            foreach (var s in symbol.Flatten())
+              if (s.Name == child.Name) {
+                cachedIsAllowedChildSymbol.Add(key, true);
+                return true;
+              }
           }
         }
@@ -365 +369 @@
         List<string> temp;
         if (allowedChildSymbolsPerIndex.TryGetValue(Tuple.Create(parent.Name, argumentIndex), out temp)) {
-          if (temp.SelectMany(s => GetSymbol(s).Flatten()).Any(s => s.Name == child.Name)) {
-            cachedIsAllowedChildSymbolIndex.Add(key, true);
-            return true;
+          for (int i = 0; i < temp.Count; i++) {
+            var symbol = GetSymbol(temp[i]);
+            foreach (var s in symbol.Flatten())
+              if (s.Name == child.Name) {
+                cachedIsAllowedChildSymbolIndex.Add(key, true);
+                return true;
+              }
           }
         }

branches/HeuristicLab.DatasetRefactor/sources/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/SymbolicExpressionTreeNode.cs

@@ -175 +175 @@
 
     public IEnumerable<ISymbolicExpressionTreeNode> IterateNodesBreadth() {
-      var list = new List<ISymbolicExpressionTreeNode>() { this };
+      var list = new List<ISymbolicExpressionTreeNode>(GetLength()) { this };
       int i = 0;
       while (i != list.Count) {
@@ -193 +193 @@
     public void ForEachNodePrefix(Action<ISymbolicExpressionTreeNode> a) {
       a(this);
-      if (Subtrees != null) {
-        foreach (var subtree in Subtrees) {
-          subtree.ForEachNodePrefix(a);
+      if (subtrees != null) {
+        //avoid linq to reduce memory pressure
+        for (int i = 0; i < subtrees.Count; i++) {
+          subtrees[i].ForEachNodePrefix(a);
         }
       }
@@ -207 +208 @@
 
     public void ForEachNodePostfix(Action<ISymbolicExpressionTreeNode> a) {
-      if (Subtrees != null) {
-        foreach (var subtree in Subtrees) {
-          subtree.ForEachNodePostfix(a);
+      if (subtrees != null) {
+        //avoid linq to reduce memory pressure
+        for (int i = 0; i < subtrees.Count; i++) {
+          subtrees[i].ForEachNodePostfix(a);
         }
       }

branches/HeuristicLab.DatasetRefactor/sources/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/SymbolicExpressionTreeTopLevelNode.cs

@@ -39 +39 @@
     protected SymbolicExpressionTreeTopLevelNode(SymbolicExpressionTreeTopLevelNode original, Cloner cloner)
       : base(original, cloner) {
-      //      grammar = cloner.Clone(original.Grammar);
-      grammar = original.Grammar;
+      grammar = cloner.Clone(original.Grammar);
     }
     public SymbolicExpressionTreeTopLevelNode() : base() { }

branches/HeuristicLab.DatasetRefactor/sources/HeuristicLab.Problems.DataAnalysis/3.4/Implementation/Regression/RegressionSolution.cs

@@ -60 +60 @@
 
     public override IEnumerable<double> GetEstimatedValues(IEnumerable<int> rows) {
-      var rowsToEvaluate = rows.Except(evaluationCache.Keys);
+      var rowsToEvaluate = rows.Where(row => !evaluationCache.ContainsKey(row));
       var rowsEnumerator = rowsToEvaluate.GetEnumerator();
       var valuesEnumerator = Model.GetEstimatedValues(ProblemData.Dataset, rowsToEvaluate).GetEnumerator();