Changeset 12103 for trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression

Timestamp:

03/02/15 16:29:24 (9 years ago)

Author:

mkommend

Message:

#2326: Merged all branch changes in the trunk.

Location:

trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4

Files:

• HeuristicLab.Problems.DataAnalysis.Symbolic.Regression-3.4.csproj (modified) (2 diffs)
• MultiObjective/SymbolicRegressionMultiObjectiveProblem.cs (modified) (3 diffs)
• SingleObjective/SymbolicRegressionSingleObjectiveProblem.cs (modified) (3 diffs)
• SymbolicRegressionPhenotypicDiversityAnalyzer.cs (copied) (copied from branches/SymbolicExpressionTreeDiversityAnalyzers/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/SymbolicRegressionPhenotypicDiversityAnalyzer.cs) (3 diffs)

trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression-3.4.csproj

@@ -128 +128 @@
     <Compile Include="SingleObjective\Evaluators\SymbolicRegressionMeanRelativeErrorEvaluator.cs" />
     <Compile Include="SingleObjective\SymbolicRegressionSolutionsAnalyzer.cs" />
+    <Compile Include="SymbolicRegressionPhenotypicDiversityAnalyzer.cs" />
     <Compile Include="SymbolicRegressionPruningAnalyzer.cs" />
     <Compile Include="SingleObjective\Evaluators\SymbolicRegressionLogResidualEvaluator.cs" />
@@ -214 +215 @@
       <Private>False</Private>
     </ProjectReference>
+    <ProjectReference Include="..\..\HeuristicLab.Optimization.Operators\3.3\HeuristicLab.Optimization.Operators-3.3.csproj">
+      <Project>{25087811-F74C-4128-BC86-8324271DA13E}</Project>
+      <Name>HeuristicLab.Optimization.Operators-3.3</Name>
+      <Private>False</Private>
+    </ProjectReference>
     <ProjectReference Include="..\..\HeuristicLab.Optimization\3.3\HeuristicLab.Optimization-3.3.csproj">
       <Project>{14AB8D24-25BC-400C-A846-4627AA945192}</Project>

trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/MultiObjective/SymbolicRegressionMultiObjectiveProblem.cs

@@ -24 +24 @@
 using HeuristicLab.Core;
 using HeuristicLab.Data;
+using HeuristicLab.Optimization;
 using HeuristicLab.Parameters;
 using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
@@ -93 +94 @@
       Operators.Add(new SymbolicRegressionMultiObjectiveTrainingBestSolutionAnalyzer());
       Operators.Add(new SymbolicRegressionMultiObjectiveValidationBestSolutionAnalyzer());
+      Operators.Add(new SymbolicExpressionTreePhenotypicSimilarityCalculator());
+      Operators.Add(new SymbolicRegressionPhenotypicDiversityAnalyzer(Operators.OfType<SymbolicExpressionTreePhenotypicSimilarityCalculator>()));
       ParameterizeOperators();
     }
@@ -122 +125 @@
         }
       }
+
+      foreach (var op in Operators.OfType<ISolutionSimilarityCalculator>()) {
+        op.SolutionVariableName = SolutionCreator.SymbolicExpressionTreeParameter.ActualName;
+        op.QualityVariableName = Evaluator.QualitiesParameter.ActualName;
+
+        if (op is SymbolicExpressionTreePhenotypicSimilarityCalculator) {
+          var phenotypicSimilarityCalculator = (SymbolicExpressionTreePhenotypicSimilarityCalculator)op;
+          phenotypicSimilarityCalculator.ProblemData = ProblemData;
+          phenotypicSimilarityCalculator.Interpreter = SymbolicExpressionTreeInterpreter;
+        }
+      }
     }
   }

trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/SingleObjective/SymbolicRegressionSingleObjectiveProblem.cs

@@ -23 +23 @@
 using HeuristicLab.Common;
 using HeuristicLab.Core;
+using HeuristicLab.Optimization;
 using HeuristicLab.Parameters;
 using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
@@ -111 +112 @@
       Operators.Add(new SymbolicRegressionSingleObjectiveValidationParetoBestSolutionAnalyzer());
       Operators.Add(new SymbolicRegressionSolutionsAnalyzer());
-
+      Operators.Add(new SymbolicExpressionTreePhenotypicSimilarityCalculator());
+      Operators.Add(new SymbolicRegressionPhenotypicDiversityAnalyzer(Operators.OfType<SymbolicExpressionTreePhenotypicSimilarityCalculator>()) { DiversityResultName = "Phenotypic Diversity" });
       ParameterizeOperators();
     }
@@ -141 +143 @@
         }
       }
+
+      foreach (var op in Operators.OfType<ISolutionSimilarityCalculator>()) {
+        op.SolutionVariableName = SolutionCreator.SymbolicExpressionTreeParameter.ActualName;
+        op.QualityVariableName = Evaluator.QualityParameter.ActualName;
+
+        if (op is SymbolicExpressionTreePhenotypicSimilarityCalculator) {
+          var phenotypicSimilarityCalculator = (SymbolicExpressionTreePhenotypicSimilarityCalculator)op;
+          phenotypicSimilarityCalculator.ProblemData = ProblemData;
+          phenotypicSimilarityCalculator.Interpreter = SymbolicExpressionTreeInterpreter;
+        }
+      }
     }
   }

trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/SymbolicRegressionPhenotypicDiversityAnalyzer.cs

@@ -34 +34 @@
   [Item("SymbolicRegressionPhenotypicDiversityAnalyzer", "An analyzer which calculates diversity based on the phenotypic distance between trees")]
   [StorableClass]
-  public class SymbolicRegressionPhenotypicDiversityAnalyzer : PopulationSimilarityAnalyzer {
+  public class SymbolicRegressionPhenotypicDiversityAnalyzer : PopulationSimilarityAnalyzer,
+    ISymbolicDataAnalysisBoundedOperator, ISymbolicDataAnalysisInterpreterOperator, ISymbolicExpressionTreeOperator {
     #region parameter names
     private const string SymbolicExpressionTreeParameterName = "SymbolicExpressionTree";
@@ -72 +73 @@
 
       UpdateCounterParameter.ActualName = "PhenotypicDiversityAnalyzerUpdateCounter";
+      DiversityResultName = "Phenotypic Diversity";
     }
 
@@ -83 +85 @@
     }
 
-    private SymbolicRegressionPhenotypicDiversityAnalyzer(SymbolicRegressionPhenotypicDiversityAnalyzer original, Cloner cloner)
+    protected SymbolicRegressionPhenotypicDiversityAnalyzer(SymbolicRegressionPhenotypicDiversityAnalyzer original, Cloner cloner)
       : base(original, cloner) {
     }