Changeset 12029 for branches/SymbolicExpressionTreeDiversityAnalyzers/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4

Timestamp:

02/17/15 20:25:46 (10 years ago)

Author:

bburlacu

Message:

#2326: Implemented analyzers

Location:

branches/SymbolicExpressionTreeDiversityAnalyzers/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4

Files:

• Analyzers/SymbolicDataAnalysisBottomUpDiversityAnalyzer.cs (added)
• HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj (modified) (10 diffs)
• SymbolicDataAnalysisProblem.cs (modified) (4 diffs)
• TreeMatching/SymbolicExpressionTreePhenotypicSimilarityCalculator.cs (added)

branches/SymbolicExpressionTreeDiversityAnalyzers/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj

@@ -41 +41 @@
     <DebugType>full</DebugType>
     <Optimize>false</Optimize>
-    <OutputPath>$(SolutionDir)\bin\</OutputPath>
+    <OutputPath>..\..\..\..\trunk\sources\bin\</OutputPath>
     <DefineConstants>DEBUG;TRACE</DefineConstants>
     <ErrorReport>prompt</ErrorReport>
@@ -51 +51 @@
     <DebugType>pdbonly</DebugType>
     <Optimize>true</Optimize>
-    <OutputPath>$(SolutionDir)\bin\</OutputPath>
+    <OutputPath>..\..\..\..\trunk\sources\bin\</OutputPath>
     <DefineConstants>TRACE</DefineConstants>
     <ErrorReport>prompt</ErrorReport>
@@ -60 +60 @@
   <PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Debug|x64' ">
     <DebugSymbols>true</DebugSymbols>
-    <OutputPath>$(SolutionDir)\bin\</OutputPath>
+    <OutputPath>..\..\..\..\trunk\sources\bin\</OutputPath>
     <DefineConstants>DEBUG;TRACE</DefineConstants>
     <DebugType>full</DebugType>
@@ -69 +69 @@
   </PropertyGroup>
   <PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Release|x64' ">
-    <OutputPath>$(SolutionDir)\bin\</OutputPath>
+    <OutputPath>..\..\..\..\trunk\sources\bin\</OutputPath>
     <DefineConstants>TRACE</DefineConstants>
     <Optimize>true</Optimize>
@@ -80 +80 @@
   <PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Debug|x86' ">
     <DebugSymbols>true</DebugSymbols>
-    <OutputPath>$(SolutionDir)\bin\</OutputPath>
+    <OutputPath>..\..\..\..\trunk\sources\bin\</OutputPath>
     <DefineConstants>DEBUG;TRACE</DefineConstants>
     <DebugType>full</DebugType>
@@ -89 +89 @@
   </PropertyGroup>
   <PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Release|x86' ">
-    <OutputPath>$(SolutionDir)\bin\</OutputPath>
+    <OutputPath>..\..\..\..\trunk\sources\bin\</OutputPath>
     <DefineConstants>TRACE</DefineConstants>
     <Optimize>true</Optimize>
@@ -99 +99 @@
   </PropertyGroup>
   <ItemGroup>
-    <Reference Include="ALGLIB-3.7.0, Version=3.7.0.0, Culture=neutral, PublicKeyToken=ba48961d6f65dcec, processorArchitecture=MSIL">
-      <HintPath>..\..\bin\ALGLIB-3.7.0.dll</HintPath>
+    <Reference Include="ALGLIB-3.7.0">
+      <HintPath>..\..\..\..\trunk\sources\bin\ALGLIB-3.7.0.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Analysis-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Analysis-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Collections-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Collections-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Common-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Common-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Common.Resources-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Common.Resources-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Core-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Core-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Data-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Data-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Encodings.SymbolicExpressionTreeEncoding-3.4">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Encodings.SymbolicExpressionTreeEncoding-3.4.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Operators-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Operators-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Optimization-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Optimization-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Optimization.Operators-3.3, Version=3.3.0.0, Culture=neutral, PublicKeyToken=ba48961d6f65dcec, processorArchitecture=MSIL">
+      <SpecificVersion>False</SpecificVersion>
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Optimization.Operators-3.3.dll</HintPath>
+    </Reference>
+    <Reference Include="HeuristicLab.Parameters-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Parameters-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Persistence-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Persistence-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.PluginInfrastructure-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.PluginInfrastructure-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Problems.DataAnalysis-3.4">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Problems.DataAnalysis-3.4.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Problems.Instances-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Problems.Instances-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Random-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Random-3.3.dll</HintPath>
       <Private>False</Private>
     </Reference>
@@ -118 +182 @@
   </ItemGroup>
   <ItemGroup>
+    <Compile Include="Analyzers\SymbolicDataAnalysisBottomUpDiversityAnalyzer.cs" />
     <Compile Include="Analyzers\SymbolicDataAnalysisSingleObjectivePruningAnalyzer.cs" />
     <Compile Include="Analyzers\SymbolicDataAnalysisSingleObjectiveValidationParetoBestSolutionAnalyzer.cs" />
@@ -240 +305 @@
     <Compile Include="TreeMatching\SymbolicExpressionTreeNodeComparer.cs" />
     <Compile Include="TreeMatching\SymbolicExpressionTreeNodeEqualityComparer.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreePhenotypicSimilarityCalculator.cs" />
     <None Include="HeuristicLab.snk" />
     <None Include="Plugin.cs.frame" />
@@ -273 +339 @@
     </BootstrapperPackage>
   </ItemGroup>
-  <ItemGroup>
-    <ProjectReference Include="..\..\HeuristicLab.Analysis\3.3\HeuristicLab.Analysis-3.3.csproj">
-      <Project>{887425B4-4348-49ED-A457-B7D2C26DDBF9}</Project>
-      <Name>HeuristicLab.Analysis-3.3</Name>
-      <Private>False</Private>
-    </ProjectReference>
-    <ProjectReference Include="..\..\HeuristicLab.Collections\3.3\HeuristicLab.Collections-3.3.csproj">
-      <Project>{958B43BC-CC5C-4FA2-8628-2B3B01D890B6}</Project>
-      <Name>HeuristicLab.Collections-3.3</Name>
-      <Private>False</Private>
-    </ProjectReference>
-    <ProjectReference Include="..\..\HeuristicLab.Common.Resources\3.3\HeuristicLab.Common.Resources-3.3.csproj">
-      <Project>{0E27A536-1C4A-4624-A65E-DC4F4F23E3E1}</Project>
-      <Name>HeuristicLab.Common.Resources-3.3</Name>
-      <Private>False</Private>
-    </ProjectReference>
-    <ProjectReference Include="..\..\HeuristicLab.Common\3.3\HeuristicLab.Common-3.3.csproj">
-      <Project>{A9AD58B9-3EF9-4CC1-97E5-8D909039FF5C}</Project>
-      <Name>HeuristicLab.Common-3.3</Name>
-      <Private>False</Private>
-    </ProjectReference>
-    <ProjectReference Include="..\..\HeuristicLab.Core\3.3\HeuristicLab.Core-3.3.csproj">
-      <Project>{C36BD924-A541-4A00-AFA8-41701378DDC5}</Project>
-      <Name>HeuristicLab.Core-3.3</Name>
-      <Private>False</Private>
-    </ProjectReference>
-    <ProjectReference Include="..\..\HeuristicLab.Data\3.3\HeuristicLab.Data-3.3.csproj">
-      <Project>{BBAB9DF5-5EF3-4BA8-ADE9-B36E82114937}</Project>
-      <Name>HeuristicLab.Data-3.3</Name>
-      <Private>False</Private>
-    </ProjectReference>
-    <ProjectReference Include="..\..\HeuristicLab.Encodings.SymbolicExpressionTreeEncoding\3.4\HeuristicLab.Encodings.SymbolicExpressionTreeEncoding-3.4.csproj">
-      <Project>{06D4A186-9319-48A0-BADE-A2058D462EEA}</Project>
-      <Name>HeuristicLab.Encodings.SymbolicExpressionTreeEncoding-3.4</Name>
-      <Private>False</Private>
-    </ProjectReference>
-    <ProjectReference Include="..\..\HeuristicLab.Operators\3.3\HeuristicLab.Operators-3.3.csproj">
-      <Project>{23DA7FF4-D5B8-41B6-AA96-F0561D24F3EE}</Project>
-      <Name>HeuristicLab.Operators-3.3</Name>
-      <Private>False</Private>
-    </ProjectReference>
-    <ProjectReference Include="..\..\HeuristicLab.Optimization.Operators\3.3\HeuristicLab.Optimization.Operators-3.3.csproj">
-      <Project>{25087811-F74C-4128-BC86-8324271DA13E}</Project>
-      <Name>HeuristicLab.Optimization.Operators-3.3</Name>
-      <Private>False</Private>
-    </ProjectReference>
-    <ProjectReference Include="..\..\HeuristicLab.Optimization\3.3\HeuristicLab.Optimization-3.3.csproj">
-      <Project>{14AB8D24-25BC-400C-A846-4627AA945192}</Project>
-      <Name>HeuristicLab.Optimization-3.3</Name>
-    </ProjectReference>
-    <ProjectReference Include="..\..\HeuristicLab.Parameters\3.3\HeuristicLab.Parameters-3.3.csproj">
-      <Project>{56F9106A-079F-4C61-92F6-86A84C2D84B7}</Project>
-      <Name>HeuristicLab.Parameters-3.3</Name>
-      <Private>False</Private>
-    </ProjectReference>
-    <ProjectReference Include="..\..\HeuristicLab.Persistence\3.3\HeuristicLab.Persistence-3.3.csproj">
-      <Project>{102BC7D3-0EF9-439C-8F6D-96FF0FDB8E1B}</Project>
-      <Name>HeuristicLab.Persistence-3.3</Name>
-      <Private>False</Private>
-    </ProjectReference>
-    <ProjectReference Include="..\..\HeuristicLab.PluginInfrastructure\3.3\HeuristicLab.PluginInfrastructure-3.3.csproj">
-      <Project>{94186A6A-5176-4402-AE83-886557B53CCA}</Project>
-      <Name>HeuristicLab.PluginInfrastructure-3.3</Name>
-      <Private>False</Private>
-    </ProjectReference>
-    <ProjectReference Include="..\..\HeuristicLab.Problems.DataAnalysis\3.4\HeuristicLab.Problems.DataAnalysis-3.4.csproj">
-      <Project>{DF87C13E-A889-46FF-8153-66DCAA8C5674}</Project>
-      <Name>HeuristicLab.Problems.DataAnalysis-3.4</Name>
-      <Private>False</Private>
-    </ProjectReference>
-    <ProjectReference Include="..\..\HeuristicLab.Problems.Instances\3.3\HeuristicLab.Problems.Instances-3.3.csproj">
-      <Project>{3540E29E-4793-49E7-8EE2-FEA7F61C3994}</Project>
-      <Name>HeuristicLab.Problems.Instances-3.3</Name>
-      <Private>False</Private>
-    </ProjectReference>
-    <ProjectReference Include="..\..\HeuristicLab.Random\3.3\HeuristicLab.Random-3.3.csproj">
-      <Project>{F4539FB6-4708-40C9-BE64-0A1390AEA197}</Project>
-      <Name>HeuristicLab.Random-3.3</Name>
-      <Private>False</Private>
-    </ProjectReference>
-  </ItemGroup>
   <Import Project="$(MSBuildToolsPath)\Microsoft.CSharp.targets" />
   <!-- To modify your build process, add your task inside one of the targets below and uncomment it. 

branches/SymbolicExpressionTreeDiversityAnalyzers/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisProblem.cs

@@ -23 +23 @@
 using System.Drawing;
 using System.Linq;
-using HeuristicLab.Analysis;
 using HeuristicLab.Common;
 using HeuristicLab.Common.Resources;
@@ -30 +29 @@
 using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
 using HeuristicLab.Optimization;
-using HeuristicLab.Optimization.Operators;
 using HeuristicLab.Parameters;
 using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
 using HeuristicLab.PluginInfrastructure;
+using HeuristicLab.Problems.DataAnalysis.Symbolic.Analyzers;
 using HeuristicLab.Problems.Instances;
 
@@ -233 +232 @@
       Operators.Add(new MinAverageMaxSymbolicExpressionTreeLengthAnalyzer());
       Operators.Add(new SymbolicExpressionTreeLengthAnalyzer());
-      Operators.Add(new SingleObjectivePopulationDiversityAnalyzer());
+      Operators.Add(new SymbolicDataAnalysisBottomUpDiversityAnalyzer());
+      Operators.Add(new SymbolicDataAnalysisPhenotypicDiversityAnalyzer());
       ParameterizeOperators();
     }
@@ -353 +353 @@
         op.EvaluatorParameter.ActualName = EvaluatorParameter.Name;
       }
-      foreach (var op in operators.OfType<SingleObjectiveSolutionSimilarityCalculator>()) {
-        op.QualityVariableName = "Quality";
-        op.SolutionVariableName = SolutionCreator.SymbolicExpressionTreeParameter.ActualName;
-      }
-      foreach (var op in operators.OfType<SingleObjectivePopulationDiversityAnalyzer>()) {
-        op.SimilarityCalculator = new SymbolicExpressionTreeBottomUpSimilarityCalculator();
+      foreach (var op in operators.OfType<SymbolicDataAnalysisBottomUpDiversityAnalyzer>()) {
+        var similarityCalculator = new SymbolicExpressionTreeBottomUpSimilarityCalculator();
+        similarityCalculator.QualityVariableName = "Quality";
+        similarityCalculator.SolutionVariableName = SolutionCreator.SymbolicExpressionTreeParameter.ActualName;
+        op.SimilarityCalculator = similarityCalculator;
+      }
+      foreach (var op in operators.OfType<SymbolicDataAnalysisPhenotypicDiversityAnalyzer>()) {
+        var similarityCalculator = new SymbolicExpressionTreePhenotypicSimilarityCalculator();
+        similarityCalculator.QualityVariableName = "Quality";
+        similarityCalculator.SolutionVariableName = SolutionCreator.SymbolicExpressionTreeParameter.ActualName;
+        op.SimilarityCalculator = similarityCalculator;
       }
     }