Changeset 12029 for branches/SymbolicExpressionTreeDiversityAnalyzers

Timestamp:

02/17/15 20:25:46 (10 years ago)

Author:

bburlacu

Message:

#2326: Implemented analyzers

Location:

branches/SymbolicExpressionTreeDiversityAnalyzers

Files:

• HeuristicLab.Problems.DataAnalysis.Symbolic.Classification (copied) (copied from trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic.Classification)
• HeuristicLab.Problems.DataAnalysis.Symbolic.Classification/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic.Classification-3.4.csproj (modified) (9 diffs)
• HeuristicLab.Problems.DataAnalysis.Symbolic.Classification/3.4/SingleObjective/SymbolicClassificationPhenotypicDiversityAnalyzer.cs (added)
• HeuristicLab.Problems.DataAnalysis.Symbolic.Regression (copied) (copied from trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression)
• HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression-3.4.csproj (modified) (9 diffs)
• HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/SingleObjective/SymbolicRegressionPhenotypicDiversityAnalyzer.cs (added)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisBottomUpDiversityAnalyzer.cs (added)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj (modified) (10 diffs)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisProblem.cs (modified) (4 diffs)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeMatching/SymbolicExpressionTreePhenotypicSimilarityCalculator.cs (added)
• SymbolicExpressionTreeDiversityAnalyzers.sln (modified) (2 diffs)
• SymbolicExpressionTreeDiversityAnalyzers.v12.suo (modified) (previous)

branches/SymbolicExpressionTreeDiversityAnalyzers/HeuristicLab.Problems.DataAnalysis.Symbolic.Classification/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic.Classification-3.4.csproj

@@ -41 +41 @@
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@@ -51 +51 @@
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@@ -60 +60 @@
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@@ -69 +69 @@
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@@ -80 +80 @@
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@@ -89 +89 @@
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@@ -99 +99 @@
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@@ -126 +186 @@
     <Compile Include="ModelCreators\NormalDistributedThresholdsModelCreator.cs" />
     <Compile Include="MultiObjective\SymbolicClassificationMultiObjectiveValidationBestSolutionAnalyzer.cs" />
+    <Compile Include="SingleObjective\SymbolicClassificationPhenotypicDiversityAnalyzer.cs" />
     <Compile Include="SymbolicClassificationPruningAnalyzer.cs" />
     <Compile Include="SymbolicClassificationSolutionImpactValuesCalculator.cs" />
@@ -183 +244 @@
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branches/SymbolicExpressionTreeDiversityAnalyzers/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic.Regression-3.4.csproj

@@ -41 +41 @@
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@@ -51 +51 @@
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@@ -69 +69 @@
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@@ -127 +182 @@
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branches/SymbolicExpressionTreeDiversityAnalyzers/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj

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-    <OutputPath>$(SolutionDir)\bin\</OutputPath>
+    <OutputPath>..\..\..\..\trunk\sources\bin\</OutputPath>
     <DefineConstants>DEBUG;TRACE</DefineConstants>
     <ErrorReport>prompt</ErrorReport>
@@ -51 +51 @@
     <DebugType>pdbonly</DebugType>
     <Optimize>true</Optimize>
-    <OutputPath>$(SolutionDir)\bin\</OutputPath>
+    <OutputPath>..\..\..\..\trunk\sources\bin\</OutputPath>
     <DefineConstants>TRACE</DefineConstants>
     <ErrorReport>prompt</ErrorReport>
@@ -60 +60 @@
   <PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Debug|x64' ">
     <DebugSymbols>true</DebugSymbols>
-    <OutputPath>$(SolutionDir)\bin\</OutputPath>
+    <OutputPath>..\..\..\..\trunk\sources\bin\</OutputPath>
     <DefineConstants>DEBUG;TRACE</DefineConstants>
     <DebugType>full</DebugType>
@@ -69 +69 @@
   </PropertyGroup>
   <PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Release|x64' ">
-    <OutputPath>$(SolutionDir)\bin\</OutputPath>
+    <OutputPath>..\..\..\..\trunk\sources\bin\</OutputPath>
     <DefineConstants>TRACE</DefineConstants>
     <Optimize>true</Optimize>
@@ -80 +80 @@
   <PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Debug|x86' ">
     <DebugSymbols>true</DebugSymbols>
-    <OutputPath>$(SolutionDir)\bin\</OutputPath>
+    <OutputPath>..\..\..\..\trunk\sources\bin\</OutputPath>
     <DefineConstants>DEBUG;TRACE</DefineConstants>
     <DebugType>full</DebugType>
@@ -89 +89 @@
   </PropertyGroup>
   <PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Release|x86' ">
-    <OutputPath>$(SolutionDir)\bin\</OutputPath>
+    <OutputPath>..\..\..\..\trunk\sources\bin\</OutputPath>
     <DefineConstants>TRACE</DefineConstants>
     <Optimize>true</Optimize>
@@ -99 +99 @@
   </PropertyGroup>
   <ItemGroup>
-    <Reference Include="ALGLIB-3.7.0, Version=3.7.0.0, Culture=neutral, PublicKeyToken=ba48961d6f65dcec, processorArchitecture=MSIL">
-      <HintPath>..\..\bin\ALGLIB-3.7.0.dll</HintPath>
+    <Reference Include="ALGLIB-3.7.0">
+      <HintPath>..\..\..\..\trunk\sources\bin\ALGLIB-3.7.0.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Analysis-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Analysis-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Collections-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Collections-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Common-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Common-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Common.Resources-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Common.Resources-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Core-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Core-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Data-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Data-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Encodings.SymbolicExpressionTreeEncoding-3.4">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Encodings.SymbolicExpressionTreeEncoding-3.4.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Operators-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Operators-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Optimization-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Optimization-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Optimization.Operators-3.3, Version=3.3.0.0, Culture=neutral, PublicKeyToken=ba48961d6f65dcec, processorArchitecture=MSIL">
+      <SpecificVersion>False</SpecificVersion>
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Optimization.Operators-3.3.dll</HintPath>
+    </Reference>
+    <Reference Include="HeuristicLab.Parameters-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Parameters-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Persistence-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Persistence-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.PluginInfrastructure-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.PluginInfrastructure-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Problems.DataAnalysis-3.4">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Problems.DataAnalysis-3.4.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Problems.Instances-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Problems.Instances-3.3.dll</HintPath>
+      <Private>False</Private>
+    </Reference>
+    <Reference Include="HeuristicLab.Random-3.3">
+      <HintPath>..\..\..\..\trunk\sources\bin\HeuristicLab.Random-3.3.dll</HintPath>
       <Private>False</Private>
     </Reference>
@@ -118 +182 @@
   </ItemGroup>
   <ItemGroup>
+    <Compile Include="Analyzers\SymbolicDataAnalysisBottomUpDiversityAnalyzer.cs" />
     <Compile Include="Analyzers\SymbolicDataAnalysisSingleObjectivePruningAnalyzer.cs" />
     <Compile Include="Analyzers\SymbolicDataAnalysisSingleObjectiveValidationParetoBestSolutionAnalyzer.cs" />
@@ -240 +305 @@
     <Compile Include="TreeMatching\SymbolicExpressionTreeNodeComparer.cs" />
     <Compile Include="TreeMatching\SymbolicExpressionTreeNodeEqualityComparer.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreePhenotypicSimilarityCalculator.cs" />
     <None Include="HeuristicLab.snk" />
     <None Include="Plugin.cs.frame" />
@@ -273 +339 @@
     </BootstrapperPackage>
   </ItemGroup>
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-      <Project>{887425B4-4348-49ED-A457-B7D2C26DDBF9}</Project>
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-      <Private>False</Private>
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-    <ProjectReference Include="..\..\HeuristicLab.Collections\3.3\HeuristicLab.Collections-3.3.csproj">
-      <Project>{958B43BC-CC5C-4FA2-8628-2B3B01D890B6}</Project>
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-      <Private>False</Private>
-    </ProjectReference>
-  </ItemGroup>
   <Import Project="$(MSBuildToolsPath)\Microsoft.CSharp.targets" />
   <!-- To modify your build process, add your task inside one of the targets below and uncomment it. 

branches/SymbolicExpressionTreeDiversityAnalyzers/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisProblem.cs

@@ -23 +23 @@
 using System.Drawing;
 using System.Linq;
-using HeuristicLab.Analysis;
 using HeuristicLab.Common;
 using HeuristicLab.Common.Resources;
@@ -30 +29 @@
 using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
 using HeuristicLab.Optimization;
-using HeuristicLab.Optimization.Operators;
 using HeuristicLab.Parameters;
 using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
 using HeuristicLab.PluginInfrastructure;
+using HeuristicLab.Problems.DataAnalysis.Symbolic.Analyzers;
 using HeuristicLab.Problems.Instances;
 
@@ -233 +232 @@
       Operators.Add(new MinAverageMaxSymbolicExpressionTreeLengthAnalyzer());
       Operators.Add(new SymbolicExpressionTreeLengthAnalyzer());
-      Operators.Add(new SingleObjectivePopulationDiversityAnalyzer());
+      Operators.Add(new SymbolicDataAnalysisBottomUpDiversityAnalyzer());
+      Operators.Add(new SymbolicDataAnalysisPhenotypicDiversityAnalyzer());
       ParameterizeOperators();
     }
@@ -353 +353 @@
         op.EvaluatorParameter.ActualName = EvaluatorParameter.Name;
       }
-      foreach (var op in operators.OfType<SingleObjectiveSolutionSimilarityCalculator>()) {
-        op.QualityVariableName = "Quality";
-        op.SolutionVariableName = SolutionCreator.SymbolicExpressionTreeParameter.ActualName;
-      }
-      foreach (var op in operators.OfType<SingleObjectivePopulationDiversityAnalyzer>()) {
-        op.SimilarityCalculator = new SymbolicExpressionTreeBottomUpSimilarityCalculator();
+      foreach (var op in operators.OfType<SymbolicDataAnalysisBottomUpDiversityAnalyzer>()) {
+        var similarityCalculator = new SymbolicExpressionTreeBottomUpSimilarityCalculator();
+        similarityCalculator.QualityVariableName = "Quality";
+        similarityCalculator.SolutionVariableName = SolutionCreator.SymbolicExpressionTreeParameter.ActualName;
+        op.SimilarityCalculator = similarityCalculator;
+      }
+      foreach (var op in operators.OfType<SymbolicDataAnalysisPhenotypicDiversityAnalyzer>()) {
+        var similarityCalculator = new SymbolicExpressionTreePhenotypicSimilarityCalculator();
+        similarityCalculator.QualityVariableName = "Quality";
+        similarityCalculator.SolutionVariableName = SolutionCreator.SymbolicExpressionTreeParameter.ActualName;
+        op.SimilarityCalculator = similarityCalculator;
       }
     }

branches/SymbolicExpressionTreeDiversityAnalyzers/SymbolicExpressionTreeDiversityAnalyzers.sln

@@ -5 +5 @@
 MinimumVisualStudioVersion = 10.0.40219.1
 Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "HeuristicLab.Problems.DataAnalysis.Symbolic-3.4", "HeuristicLab.Problems.DataAnalysis.Symbolic\3.4\HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj", "{3D28463F-EC96-4D82-AFEE-38BE91A0CA00}"
+EndProject
+Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "HeuristicLab.Problems.DataAnalysis.Symbolic.Classification-3.4", "HeuristicLab.Problems.DataAnalysis.Symbolic.Classification\3.4\HeuristicLab.Problems.DataAnalysis.Symbolic.Classification-3.4.csproj", "{05BAE4E1-A9FA-4644-AA77-42558720159E}"
+EndProject
+Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "HeuristicLab.Problems.DataAnalysis.Symbolic.Regression-3.4", "HeuristicLab.Problems.DataAnalysis.Symbolic.Regression\3.4\HeuristicLab.Problems.DataAnalysis.Symbolic.Regression-3.4.csproj", "{5AC82412-911B-4FA2-A013-EDC5E3F3FCC2}"
 EndProject
 Global
@@ -28 +32 @@
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     {3D28463F-EC96-4D82-AFEE-38BE91A0CA00}.Release|x86.Build.0 = Release|x86
+    {05BAE4E1-A9FA-4644-AA77-42558720159E}.Debug|Any CPU.ActiveCfg = Debug|Any CPU
+    {05BAE4E1-A9FA-4644-AA77-42558720159E}.Debug|Any CPU.Build.0 = Debug|Any CPU
+    {05BAE4E1-A9FA-4644-AA77-42558720159E}.Debug|x64.ActiveCfg = Debug|x64
+    {05BAE4E1-A9FA-4644-AA77-42558720159E}.Debug|x64.Build.0 = Debug|x64
+    {05BAE4E1-A9FA-4644-AA77-42558720159E}.Debug|x86.ActiveCfg = Debug|x86
+    {05BAE4E1-A9FA-4644-AA77-42558720159E}.Debug|x86.Build.0 = Debug|x86
+    {05BAE4E1-A9FA-4644-AA77-42558720159E}.Release|Any CPU.ActiveCfg = Release|Any CPU
+    {05BAE4E1-A9FA-4644-AA77-42558720159E}.Release|Any CPU.Build.0 = Release|Any CPU
+    {05BAE4E1-A9FA-4644-AA77-42558720159E}.Release|x64.ActiveCfg = Release|x64
+    {05BAE4E1-A9FA-4644-AA77-42558720159E}.Release|x64.Build.0 = Release|x64
+    {05BAE4E1-A9FA-4644-AA77-42558720159E}.Release|x86.ActiveCfg = Release|x86
+    {05BAE4E1-A9FA-4644-AA77-42558720159E}.Release|x86.Build.0 = Release|x86
+    {5AC82412-911B-4FA2-A013-EDC5E3F3FCC2}.Debug|Any CPU.ActiveCfg = Debug|Any CPU
+    {5AC82412-911B-4FA2-A013-EDC5E3F3FCC2}.Debug|Any CPU.Build.0 = Debug|Any CPU
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+    {5AC82412-911B-4FA2-A013-EDC5E3F3FCC2}.Debug|x64.Build.0 = Debug|x64
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+    {5AC82412-911B-4FA2-A013-EDC5E3F3FCC2}.Release|Any CPU.Build.0 = Release|Any CPU
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+    {5AC82412-911B-4FA2-A013-EDC5E3F3FCC2}.Release|x86.Build.0 = Release|x86
   EndGlobalSection
   GlobalSection(SolutionProperties) = preSolution