Changeset 11947

Timestamp:

02/06/15 14:21:26 (10 years ago)

Author:

jkarder

Message:

#2215: merged r11915:11918, r11921 and r11934 into stable

Location:

stable

Files:

• . (modified) (1 prop)
• HeuristicLab.Problems.DataAnalysis.Symbolic (modified) (1 prop)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisPopulationDiversityAnalyzer.cs (copied) (copied from trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisPopulationDiversityAnalyzer.cs)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj (modified) (2 diffs)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Interpreter/SymbolicDataAnalysisExpressionTreeLinearInterpreter.cs (modified) (1 diff)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Matching (deleted)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisExpressionTreeSimilarityCalculator.cs (copied) (copied from trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisExpressionTreeSimilarityCalculator.cs)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisProblem.cs (modified) (4 diffs)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeMatching (copied) (copied from trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeMatching)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeMatching/SymbolicExpressionTreeBottomUpSimilarityCalculator.cs (modified) (1 diff)
• HeuristicLab.Tests (modified) (1 prop)
• HeuristicLab.Tests/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4/SymbolicExpressionTreeBottomUpSimilarityCalculatorTest.cs (copied) (copied from trunk/sources/HeuristicLab.Tests/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4/SymbolicExpressionTreeBottomUpSimilarityCalculatorTest.cs) (1 diff)
• HeuristicLab.Tests/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4/SymbolicExpressionTreeMaxCommonSubtreeSimilarityCalculatorTest.cs (copied) (copied from trunk/sources/HeuristicLab.Tests/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4/SymbolicExpressionTreeMaxCommonSubtreeSimilarityCalculatorTest.cs)
• HeuristicLab.Tests/HeuristicLab.Tests.csproj (modified) (1 diff)

stable/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj

@@ -135 +135 @@
     <Compile Include="Importer\Token.cs" />
     <Compile Include="Interfaces\IModelBacktransformator.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeCanonicalSorter.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeEqualityComparer.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeMatching.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeMaxCommonSequenceCalculator.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeNodeComparer.cs" />
-    <Compile Include="Matching\SymbolicExpressionTreeNodeSimilarityComparer.cs" />
     <Compile Include="SymbolicExpressionTreeBacktransformator.cs" />
     <Compile Include="SymbolicDataAnalysisExpressionPruningOperator.cs" />
@@ -239 +233 @@
     <Compile Include="Symbols\VariableTreeNode.cs" />
     <Compile Include="TransformationToSymbolicTreeMapper.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeBottomUpSimilarityCalculator.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeCanonicalSorter.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeEqualityComparer.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeMatching.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeMaxCommonSubtreeSimilarityCalculator.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeNodeComparer.cs" />
+    <Compile Include="TreeMatching\SymbolicExpressionTreeNodeEqualityComparer.cs" />
     <None Include="HeuristicLab.snk" />
     <None Include="Plugin.cs.frame" />

stable/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Interpreter/SymbolicDataAnalysisExpressionTreeLinearInterpreter.cs

@@ -352 +352 @@
     }
 
-    private static void PrepareInstructions(LinearInstruction[] code, Dataset dataset) {
+    public static void PrepareInstructions(LinearInstruction[] code, Dataset dataset) {
       for (int i = 0; i != code.Length; ++i) {
         var instr = code[i];

stable/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisProblem.cs

@@ -23 +23 @@
 using System.Drawing;
 using System.Linq;
+using HeuristicLab.Analysis;
 using HeuristicLab.Common;
 using HeuristicLab.Common.Resources;
@@ -29 +30 @@
 using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
 using HeuristicLab.Optimization;
+using HeuristicLab.Optimization.Operators;
 using HeuristicLab.Parameters;
 using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
@@ -231 +233 @@
       Operators.Add(new MinAverageMaxSymbolicExpressionTreeLengthAnalyzer());
       Operators.Add(new SymbolicExpressionTreeLengthAnalyzer());
+      Operators.Add(new SingleObjectivePopulationDiversityAnalyzer());
       ParameterizeOperators();
     }
@@ -350 +353 @@
         op.EvaluatorParameter.ActualName = EvaluatorParameter.Name;
       }
+      foreach (var op in operators.OfType<SingleObjectiveSolutionSimilarityCalculator>()) {
+        op.QualityVariableName = "Quality";
+        op.SolutionVariableName = SolutionCreator.SymbolicExpressionTreeParameter.ActualName;
+      }
+      foreach (var op in operators.OfType<SingleObjectivePopulationDiversityAnalyzer>()) {
+        op.SimilarityCalculator = new SymbolicExpressionTreeBottomUpSimilarityCalculator();
+      }
     }
 

stable/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/TreeMatching/SymbolicExpressionTreeBottomUpSimilarityCalculator.cs

@@ -42 +42 @@
 
     [StorableConstructor]
-    private SymbolicExpressionTreeBottomUpSimilarityCalculator(bool deserializing)
+    protected SymbolicExpressionTreeBottomUpSimilarityCalculator(bool deserializing)
       : base(deserializing) {
     }

stable/HeuristicLab.Tests/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4/SymbolicExpressionTreeBottomUpSimilarityCalculatorTest.cs

@@ -47 +47 @@
     }
 
-    [TestMethod]
-    [TestCategory("Problems.DataAnalysis.Symbolic")]
-    [TestProperty("Time", "short")]
     private void TestMatchedNodes(string expr1, string expr2, int expected) {
       var t1 = importer.Import(expr1);

stable/HeuristicLab.Tests/HeuristicLab.Tests.csproj

@@ -492 +492 @@
     <Compile Include="HeuristicLab.Problems.DataAnalysis-3.4\OnlineCalculatorPerformanceTest.cs" />
     <Compile Include="HeuristicLab.Problems.DataAnalysis-3.4\StatisticCalculatorsTest.cs" />
+    <Compile Include="HeuristicLab.Problems.DataAnalysis.Symbolic-3.4\SymbolicExpressionTreeBottomUpSimilarityCalculatorTest.cs" />
+    <Compile Include="HeuristicLab.Problems.DataAnalysis.Symbolic-3.4\SymbolicExpressionTreeMaxCommonSubtreeSimilarityCalculatorTest.cs" />
     <Compile Include="HeuristicLab.Problems.DataAnalysis.Symbolic.TimeSeriesPrognosis-3.4\SymbolicDataAnalysisExpressionTreeInterpreterTest.cs" />
     <Compile Include="HeuristicLab.Problems.DataAnalysis.Symbolic.TimeSeriesPrognosis-3.4\Util.cs" />