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Initialization

Timestamp:

07/18/14 13:44:53 (10 years ago)

Author:

ascheibe

Message:

merged rest of trunk into hive statistics branch

Location:

branches/HiveStatistics/sources

Files:

: 7 edited

. (modified) (2 props)
HeuristicLab.Algorithms.DataAnalysis (modified) (1 prop)
HeuristicLab.Algorithms.DataAnalysis/3.4/Nca/Initialization/INcaInitializer.cs (modified) (1 diff)
HeuristicLab.Algorithms.DataAnalysis/3.4/Nca/Initialization/LdaInitializer.cs (modified) (2 diffs)
HeuristicLab.Algorithms.DataAnalysis/3.4/Nca/Initialization/NcaInitializer.cs (modified) (1 diff)
HeuristicLab.Algorithms.DataAnalysis/3.4/Nca/Initialization/PcaInitializer.cs (modified) (1 diff)
HeuristicLab.Algorithms.DataAnalysis/3.4/Nca/Initialization/RandomInitializer.cs (modified) (1 diff)

Legend:

: Unmodified
: Added
: Removed

branches/HiveStatistics/sources

Property svn:ignore

-                      old
+                      new
 FxCopResults.txt
 Google.ProtocolBuffers-0.9.1.dll
+Google.ProtocolBuffers-2.4.1.473.dll
 HeuristicLab 3.3.5.1.ReSharper.user
 HeuristicLab 3.3.6.0.ReSharper.user
 HeuristicLab.4.5.resharper.user
 HeuristicLab.ExtLibs.6.0.ReSharper.user
+HeuristicLab.Scripting.Development
 HeuristicLab.resharper.user
 ProtoGen.exe
 …
 _ReSharper.HeuristicLab
 _ReSharper.HeuristicLab 3.3
+_ReSharper.HeuristicLab 3.3 Tests
 _ReSharper.HeuristicLab.ExtLibs
 bin
 protoc.exe
-_ReSharper.HeuristicLab 3.3 Tests
-Google.ProtocolBuffers-2.4.1.473.dll

Property svn:mergeinfo changed

/branches/1721-RandomForestPersistence (added)	merged: 10321-10322
/branches/DataPreprocessing (added)	merged: 10085,10095,10134,10143-10148,10157-10169,10179-10189,10191-10194,10216-10221,10234-10260,10303-10304,10307-10308,10310-10317,10319-10320,10341-10345,10367,10369-10372,10374,10377,10380-10383,10532-10539,10542,10544,10546-10552,10554-10555,10557-10559,10571-10574,10580-10583,10585-10590,10609-10638,10657-10673,10676,10689-10719,10733-10742,10762-10766,10768-10773,10775-10786,10802-10821,10841-10849,10851-10854,10863,10866-10883,10898-10902,10904-10905,10908-10909,10911,10913-10916,10918,10921-10922,10925,10930-10935,10938-10940,10942-10952,10962,10964-10965,10967,10969-10973,10976-10982,10987,10990-10995,10997-11004,11009,11011,11037-11039,11042-11045,11064,11068,11070,11098
/branches/HLScript (added)	merged: 10331-10332,10358
/branches/HeuristicLab.Problems.DataAnalysis.Trading (added)	merged: 6123-6128,6131,6136,6138,6861,6937,9176,9213,9743-9745,9796-9799
/branches/LogResidualEvaluator (added)	merged: 10202-10203,10305,10482-10483
/branches/SpectralKernelForGaussianProcesses (added)	merged: 10204-10205,10473,10479
/stable (added)	merged: 10032-10033,11170,11173,11175
/trunk/sources	merged: 9445,9447-9459,9462-9466,9471-9472,9474,9476-9479,9493,9496,9498,9504-9506,9515-9517,9520-9521,9523,9530-9531,9534-9537,9540,9542-9544,9552-9555,9568-9569,9587,9590-9592,9600,9607-9608,9610-9611,9613,9618,9623-9624,9626,9647-9649,9652,9657-9660,9664-9666,9675,9692,9695,9699,9702,9710,9714,9718-9720,9740-9741,9751,9755,9762,9764-9775,9777-9778,9782-9786,9792,9794,9801-9807,9809-9812,9816-9817,9819-9822,9824-9825,9828,9830,9833,9837-9841,9845,9848-9851,9855,9859-9860,9863,9865-9868,9871,9893-9897,9900-9902,9905-9907,9910,9915-9916,9919-9921,9928,9930,9934-9935,9938-9941,9944,9946,9949,9955-9956,9958-9959,9964-9965,9973-9975,9978,9980-9982,9988-9989,9991-9992,9994-9995,9997,10000-10004,10009-10010,10015,10037,10130,10149-10150,10154,10170-10171,10173-10176,10195-10196,10212-10213,10231,10261,10273,10291-10292,10295,10298,10323-10324,10346,10348,10355,10359-10360,10362-10363,10365-10366,10368,10375,10378,10391,10401,10406-10407,10414,10417-10418,10428,10432-10433,10435,10440,10448,10453,10460,10465-10466,10469-10470,10472,10474-10477,10480,10484,10486,10488-10500,10503-10504,10506,10510-10512,10520-10523,10526,10531,10540-10541,10543,10545,10561-10566,10575-10578,10596-10597,10599,10601-10607,10639,10642-10643,10646,10651-10653,10727,10731,10745,10747,10761,10767,10774,10787-10791,10793-10794,10796,10799-10800,10826,10857-10862,10865,10885,10889,10894-10896,10924,10926-10927,10937,10941,10953,10955-10956,10958-10961,10963,10975,10983-10986,10988-10989,10996,11007-11008,11012-11014,11019,11024-11027,11031,11034-11035,11048,11050-11052,11056-11058,11060,11065-11067,11071,11074-11082,11086-11088,11091-11093,11095-11097,11099,11102,11108,11111-11117,11123-11128,11131,11135,11153,11156,11161,11163,11171-11172,11174,11176

branches/HiveStatistics/sources/HeuristicLab.Algorithms.DataAnalysis

Property svn:mergeinfo changed

/branches/1721-RandomForestPersistence/HeuristicLab.Algorithms.DataAnalysis (added)	merged: 10321-10322
/branches/DataPreprocessing/HeuristicLab.Algorithms.DataAnalysis (added)	merged: 10538,10925,11009,11070
/branches/LogResidualEvaluator/HeuristicLab.Algorithms.DataAnalysis (added)	merged: 10483
/branches/SpectralKernelForGaussianProcesses/HeuristicLab.Algorithms.DataAnalysis (added)	merged: 10205,10473
/stable/HeuristicLab.Algorithms.DataAnalysis (added)	merged: 10032,11170,11173
/trunk/sources/HeuristicLab.Algorithms.DataAnalysis (added)	merged: 9451,9456,9462,9493,9504,9515-9517,9534-9537,9542-9544,9919,10037,10480,10484,10489-10491,10493,10963,11114,11171,11174

branches/HiveStatistics/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/Nca/Initialization/INcaInitializer.cs

r11203	r11205
1	1	#region License Information
2	2	/* HeuristicLab
3		* Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
	3	* Copyright (C) 2002-2014 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
4	4	*
5	5	* This file is part of HeuristicLab.

branches/HiveStatistics/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/Nca/Initialization/LdaInitializer.cs

-                      r11203
+                      r11205
 #region License Information
 /* HeuristicLab
  * Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ * Copyright (C) 2002-2014 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
+ *
  * This file is part of HeuristicLab.
 …
                                                 data.TrainingIndices);
+      var uniqueClasses = data.Dataset.GetDoubleValues(data.TargetVariable, data.TrainingIndices).Distinct().Count();
+      // map class values to sequential natural numbers (required by alglib)
+      var uniqueClasses = data.Dataset.GetDoubleValues(data.TargetVariable, data.TrainingIndices)
+                                        .Distinct()
+                                        .Select((v, i) => new { v, i })
+                                        .ToDictionary(x => x.v, x => x.i);
+      for (int row = 0; row < instances; row++)
+        ldaDs[row, attributes] = uniqueClasses[ldaDs[row, attributes]];
       int info;
       double[,] matrix;
       alglib.fisherldan(ldaDs, instances, attributes, uniqueClasses, out info, out matrix);
+      alglib.fisherldan(ldaDs, instances, attributes, uniqueClasses.Count, out info, out matrix);
       return matrix;

branches/HiveStatistics/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/Nca/Initialization/NcaInitializer.cs

r11203	r11205
1	1	#region License Information
2	2	/* HeuristicLab
3		* Copyright (C) 2002-2013 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
	3	* Copyright (C) 2002-2014 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
4	4	*
5	5	* This file is part of HeuristicLab.

branches/HiveStatistics/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/Nca/Initialization/PcaInitializer.cs

r11203	r11205
1	1	#region License Information
2	2	/* HeuristicLab
3		* Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
	3	* Copyright (C) 2002-2014 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
4	4	*
5	5	* This file is part of HeuristicLab.

branches/HiveStatistics/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/Nca/Initialization/RandomInitializer.cs

r11203	r11205
1	1	#region License Information
2	2	/* HeuristicLab
3		* Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
	3	* Copyright (C) 2002-2014 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
4	4	*
5	5	* This file is part of HeuristicLab.

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Changeset 11205 for branches/HiveStatistics/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/Nca/Initialization

Legend:

branches/HiveStatistics/sources

branches/HiveStatistics/sources/HeuristicLab.Algorithms.DataAnalysis

branches/HiveStatistics/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/Nca/Initialization/INcaInitializer.cs

branches/HiveStatistics/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/Nca/Initialization/LdaInitializer.cs

branches/HiveStatistics/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/Nca/Initialization/NcaInitializer.cs

branches/HiveStatistics/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/Nca/Initialization/PcaInitializer.cs

branches/HiveStatistics/sources/HeuristicLab.Algorithms.DataAnalysis/3.4/Nca/Initialization/RandomInitializer.cs

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