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Ignore:
Timestamp:
04/14/14 17:15:32 (11 years ago)
Author:
bburlacu
Message:

#1772: Small improvements to FragmentGraphView, moved tracking classes to separate folder.

Location:
branches/HeuristicLab.EvolutionTracking
Files:
1 added
5 edited
10 moved

Legend:

Unmodified
Added
Removed

  • branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views/3.4/SymbolicExpressionTreeTile.cs

    r10730 r10746  
    2323using System.Collections.Generic;
    2424using System.Drawing;
     25using System.Drawing.Drawing2D;
    2526using System.Linq;
    2627using HeuristicLab.Common;
    … …  
    3738    public int PreferredNodeWidth { get; set; }
    3839    public int PreferredNodeHeight { get; set; }
     40    public ReingoldTilfordLayoutEngine<ISymbolicExpressionTreeNode> LayoutEngine { get; set; }
     41    private readonly Dictionary<IPrimitive, ISymbolicExpressionTreeNode> primitivesToNodes;
     42    private readonly Dictionary<ISymbolicExpressionTreeNode, IPrimitive> nodesToPrimitives;
    3943
    4044    private Size size;
    … …  
    7074    }
    7175
     76    public IPrimitive GetPrimitive(ISymbolicExpressionTreeNode node) {
     77      IPrimitive primitive;
     78      nodesToPrimitives.TryGetValue(node, out primitive);
     79      return primitive;
     80    }
     81
     82    public ISymbolicExpressionTreeNode GetExpressionTreeNode(IPrimitive primitive) {
     83      ISymbolicExpressionTreeNode node;
     84      primitivesToNodes.TryGetValue(primitive, out node);
     85      return node;
     86    }
     87
    7288    private ISymbolicExpressionTree symbolicExpressionTree;
    7389    public ISymbolicExpressionTree SymbolicExpressionTree {
    … …  
    8197    new private void Clear() {
    8298      Group.Clear();
    83       primitiveMap.Clear();
     99      primitivesToNodes.Clear();
     100      nodesToPrimitives.Clear();
    84101    }
    85102
    … …  
    92109      }
    93110    }
    94     public ReingoldTilfordLayoutEngine<ISymbolicExpressionTreeNode> LayoutEngine { get; set; }
    95     private readonly Dictionary<IPrimitive, ISymbolicExpressionTreeNode> primitiveMap;
    96111
    97112    public SymbolicExpressionTreeTile(IChart chart)
    98113      : base(chart) {
    99       primitiveMap = new Dictionary<IPrimitive, ISymbolicExpressionTreeNode>();
     114      primitivesToNodes = new Dictionary<IPrimitive, ISymbolicExpressionTreeNode>();
     115      nodesToPrimitives = new Dictionary<ISymbolicExpressionTreeNode, IPrimitive>();
    100116      PreferredNodeWidth = 80;
    101117      PreferredNodeHeight = 40;
    … …  
    124140        var upperRight = new PointD(visualNode.X + preferredNodeWidth, visualNode.Y + preferredNodeHeight);
    125141        var node = visualNode.Content;
     142
    126143        RectangularPrimitiveBase rectangularPrimitive;
    127144        if (node.SubtreeCount == 0) {
    … …  
    131148        }
    132149
    133         primitiveMap.Add(rectangularPrimitive, node); // to be able to retrieve nodes via primitives
     150        primitivesToNodes.Add(rectangularPrimitive, node); // to be able to retrieve nodes via primitives
     151        nodesToPrimitives.Add(node, rectangularPrimitive);
    134152        this.Add(rectangularPrimitive);
    135153
    … …  
    179197      }
    180198    }
     199
     200    public override void Draw(Graphics graphics) {
     201      graphics.SmoothingMode = SmoothingMode.HighQuality;
     202      base.Draw(graphics);
     203    }
    181204  }
    182205}

  • branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking.Views/3.4/GenealogyGraphChart.cs

    r10732 r10746  
    225225    private static void DrawLineage(VisualGenealogyGraphNode node, Func<VisualGenealogyGraphNode, IEnumerable<VisualGenealogyGraphArc>> arcSelector, Func<VisualGenealogyGraphArc, VisualGenealogyGraphNode> nodeSelector) {
    226226      var brush = (SolidBrush)node.Brush;
     227      if (brush.Color != Color.Transparent) return; // this lineage was already drawn (avoid redrawing common ancestors)
    227228      brush.Color = node.Data.GetColor();
    228       var arcs = arcSelector(node).ToList();
     229      var arcs = arcSelector(node);
    229230      foreach (var arc in arcs) {
    230231        var source = arc.Source.Data;
    … …  
    234235        arc.Pen.Brush = new LinearGradientBrush(start, end, source.GetColor(), target.GetColor());
    235236        arc.Pen.Color = Color.Transparent;
    236         //        if (arc == arcs[0]) { arc.Pen.Width = 2; } // mark connection to the root parent
    237237        DrawLineage(nodeSelector(arc), arcSelector, nodeSelector);
    238238      }

  • branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic.Views/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic.Views-3.4.csproj

    r10728 r10746  
    193193  <ItemGroup>
    194194    <Compile Include="Exporters\SymbolicSolutionExcelExporter.cs" />
    195     <Compile Include="FragmentGraphView.cs">
    196       <SubType>UserControl</SubType>
    197     </Compile>
    198     <Compile Include="FragmentGraphView.Designer.cs">
    199       <DependentUpon>FragmentGraphView.cs</DependentUpon>
    200     </Compile>
    201195    <Compile Include="InteractiveSymbolicExpressionTreeChart.cs">
    202196      <SubType>UserControl</SubType>
    … …  
    225219      <DependentUpon>SlidingWindowDataView.cs</DependentUpon>
    226220    </Compile>
    227     <Compile Include="SymboldDataAnalysisGenealogyView.cs">
    228       <SubType>UserControl</SubType>
    229     </Compile>
    230     <Compile Include="SymboldDataAnalysisGenealogyView.Designer.cs">
    231       <DependentUpon>SymboldDataAnalysisGenealogyView.cs</DependentUpon>
    232     </Compile>
    233     <Compile Include="SymbolicDataAnalysisExpressionGenealogyGraphChart.cs" />
    234     <Compile Include="SymbolicDataAnalysisExpressionGenealogyGraphChart.Designer.cs">
    235       <DependentUpon>SymbolicDataAnalysisExpressionGenealogyGraphChart.cs</DependentUpon>
    236     </Compile>
    237     <Compile Include="SymbolicExpressionChartControl.cs">
    238       <SubType>UserControl</SubType>
    239     </Compile>
    240     <Compile Include="SymbolicExpressionChartControl.Designer.cs">
    241       <DependentUpon>SymbolicExpressionChartControl.cs</DependentUpon>
    242     </Compile>
    243     <Compile Include="SymbolicDataAnalysisExpressionLineageExplorerView.cs">
    244       <SubType>UserControl</SubType>
    245     </Compile>
    246     <Compile Include="SymbolicDataAnalysisExpressionLineageExplorerView.Designer.cs">
    247       <DependentUpon>SymbolicDataAnalysisExpressionLineageExplorerView.cs</DependentUpon>
    248     </Compile>
    249221    <Compile Include="TextualSymbolicDataAnalysisModelView.cs">
    250222      <SubType>UserControl</SubType>
    … …  
    294266    <Compile Include="Symbols\VariableView.Designer.cs">
    295267      <DependentUpon>VariableView.cs</DependentUpon>
     268    </Compile>
     269    <Compile Include="Tracking\FragmentGraphView.cs">
     270      <SubType>UserControl</SubType>
     271    </Compile>
     272    <Compile Include="Tracking\FragmentGraphView.Designer.cs">
     273      <DependentUpon>FragmentGraphView.cs</DependentUpon>
     274    </Compile>
     275    <Compile Include="Tracking\SymboldDataAnalysisGenealogyView.cs">
     276      <SubType>UserControl</SubType>
     277    </Compile>
     278    <Compile Include="Tracking\SymboldDataAnalysisGenealogyView.Designer.cs">
     279      <DependentUpon>SymboldDataAnalysisGenealogyView.cs</DependentUpon>
     280    </Compile>
     281    <Compile Include="Tracking\SymbolicDataAnalysisExpressionGenealogyGraphChart.cs">
     282      <SubType>UserControl</SubType>
     283    </Compile>
     284    <Compile Include="Tracking\SymbolicDataAnalysisExpressionGenealogyGraphChart.Designer.cs">
     285      <DependentUpon>SymbolicDataAnalysisExpressionGenealogyGraphChart.cs</DependentUpon>
     286    </Compile>
     287    <Compile Include="Tracking\SymbolicDataAnalysisExpressionLineageExplorerView.cs">
     288      <SubType>UserControl</SubType>
     289    </Compile>
     290    <Compile Include="Tracking\SymbolicDataAnalysisExpressionLineageExplorerView.Designer.cs">
     291      <DependentUpon>SymbolicDataAnalysisExpressionLineageExplorerView.cs</DependentUpon>
     292    </Compile>
     293    <Compile Include="Tracking\SymbolicExpressionChartControl.cs">
     294      <SubType>UserControl</SubType>
     295    </Compile>
     296    <Compile Include="Tracking\SymbolicExpressionChartControl.Designer.cs">
     297      <DependentUpon>SymbolicExpressionChartControl.cs</DependentUpon>
    296298    </Compile>
    297299    <Compile Include="TreeEditDialogs\SymbolicExpressionTreeConstantNodeEditDialog.cs">
    … …  
    366368    </Content>
    367369  </ItemGroup>
     370  <ItemGroup />
    368371  <Import Project="$(MSBuildToolsPath)\Microsoft.CSharp.targets" />
    369372  <!-- To modify your build process, add your task inside one of the targets below and uncomment it.

  • branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic.Views/3.4/Tracking/FragmentGraphView.cs

    r10732 r10746  
    1313  [Content(typeof(IGenealogyGraph<IFragment<ISymbolicExpressionTreeNode>>), IsDefaultView = true)]
    1414  public sealed partial class FragmentGraphView : ItemView {
    15     private int PreferredSpacing = 50;
     15    private const int PreferredHorizontalSpacing = 10;
     16    private const int PreferredVerticalSpacing = 25;
    1617
    1718    private ReingoldTilfordLayoutEngine<TileLayoutNode> layoutEngine;
    … …  
    3132
    3233      layoutEngine = new ReingoldTilfordLayoutEngine<TileLayoutNode>(n => n.Children) {
    33         HorizontalSpacing = 50,
    34         VerticalSpacing = 50,
     34        HorizontalSpacing = PreferredHorizontalSpacing,
     35        VerticalSpacing = PreferredVerticalSpacing,
    3536      };
    3637      symbolicExpressionEngine = new ReingoldTilfordLayoutEngine<ISymbolicExpressionTreeNode>(n => n.Subtrees) {
    37         HorizontalSpacing = 50,
    38         VerticalSpacing = 50,
     38        HorizontalSpacing = PreferredHorizontalSpacing,
     39        VerticalSpacing = PreferredVerticalSpacing,
    3940        NodeWidth = 80,
    4041        NodeHeight = 40
    … …  
    7475      layoutEngine.NodeWidth = maxTileWidth;
    7576      layoutEngine.NodeHeight = maxTileHeight;
    76       layoutEngine.HorizontalSpacing = PreferredSpacing;
    77       layoutEngine.VerticalSpacing = PreferredSpacing;
     77      layoutEngine.HorizontalSpacing = PreferredHorizontalSpacing;
     78      layoutEngine.VerticalSpacing = PreferredVerticalSpacing;
    7879
    7980      var visualNodes = layoutEngine.CalculateLayout(fragmentRoot);
    … …  
    9293        var aPos = aTile.Position;
    9394
    94         var lowerLeftMarker = new FixedSizeCircle(chart, aTile.Position, 5, new Pen(Color.Red), new SolidBrush(Color.Transparent));
    95         var upperRightMarker = new FixedSizeCircle(chart, new PointD(aPos.X + aSize.Width, aPos.Y + aSize.Height), 5,
    96           new Pen(Color.Blue), new SolidBrush(Color.Transparent));
    97         symbolicExpressionChartControl.Add(lowerLeftMarker); symbolicExpressionChartControl.Add(upperRightMarker);
     95        // mark swapped fragment
     96        if (node.Content.Index != 0) {
     97          var subtree = node.Content.Root.NodeAt(node.Content.Index);
     98          foreach (var s in subtree.IterateNodesPrefix()) {
     99            var primitive = aTile.GetPrimitive(s);
     100            if (primitive != null) {
     101              var rpb = primitive as RectangularPrimitiveBase;
     102              if (rpb != null) {
     103                rpb.Pen = new Pen(Color.RoyalBlue);
     104              }
     105            }
     106          }
     107        }
     108
     109        // mark the subtree that was replaced by the fragment
     110        if (node.Children.Any() && node.Content.Index != 0) {
     111          var child = node.Children.First();
     112          {
     113            var subtree = child.Content.Root.NodeAt(node.Content.Index);
     114            var tile = tileDictionary[child].Tile;
     115            foreach (var s in subtree.IterateNodesPrefix()) {
     116              var primitive = tile.GetPrimitive(s);
     117              if (primitive != null) {
     118                var rpb = primitive as RectangularPrimitiveBase;
     119                if (rpb != null) {
     120                  rpb.Pen = new Pen(Color.DarkOrange);
     121                }
     122              }
     123            }
     124          }
     125        }
    98126
    99127        foreach (var child in node.Children) {
    … …  
    104132          var line = new Line(chart, new PointD(aPos.X + aSize.Width / 2.0, aPos.Y + aSize.Height), new PointD(bPos.X + bSize.Width / 2.0, bPos.Y));
    105133          symbolicExpressionChartControl.Add(line);
     134
     135
    106136        }
    107137      }
    108       //      symbolicExpressionChartControl.FlipVertical();
    109138      symbolicExpressionChartControl.UpdateEnabled = true;
    110139      symbolicExpressionChartControl.EnforceUpdate();

  • branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic.Views/3.4/Tracking/SymboldDataAnalysisGenealogyView.cs

    r10732 r10746  
    182182        var fragmentLength = fragment.Root.GetLength();
    183183
    184         var fragmentNode = new FragmentNode { Content = new Fragment<ISymbolicExpressionTreeNode> { Root = subtree }, Rank = graphNode.Rank };
     184        var fragmentNode = new FragmentNode {
     185          Content = new Fragment<ISymbolicExpressionTreeNode> {
     186            Root = subtree,
     187          },
     188          Rank = graphNode.Rank
     189        };
     190
    185191        if (parentNode != null) {
    186           if (parentNode == fragmentNode)
     192          if (parentNode == fragmentNode) {
    187193            throw new Exception("Node cannot be a child of itself!");
     194          }
    188195          var arc = new GenealogyGraphArc { Source = parentNode, Target = fragmentNode };
    189196          parentNode.AddForwardArc(arc);
    190197        }
    191198        fragmentGraph.AddVertex(fragmentNode);
     199
    192200        parentNode = fragmentNode;
    193201
    … …  
    213221        if (subtreeIndex < fragment.Index && fragment.Index < subtreeIndex + subtreeLength) {
    214222          if (fragmentLength >= subtreeLength) throw new Exception("Subtree contains fragment, so fragment length should be less than the subtree length.");
    215 
     223          fragmentNode.Content.Index = fragment.Index - subtreeIndex;
    216224          graphNode = parentVertices[0];
     225          // debug check
    217226          tree = graphNode.Content;
    218227          subtree = tree.NodeAt(subtreeIndex);
     228          if (subtree.GetLength() <= fragmentNode.Content.Index) {
     229            throw new Exception("Index exceeds subtree length.");
     230          }
    219231          // track subtree
    220232          Trace(graphNode, subtree, fragmentGraph, fragmentNode);
    … …  
    222234          // track fragment
    223235          if (parentVertices.Count > 1) {
     236            // save the index of the current fragment in the tree where it was swapped
    224237            graphNode = parentVertices[1];
    225238            tree = graphNode.Content;

  • branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Matching/SymbolicExpressionTreeMatching.cs

    r10650 r10746  
    1616    public static IEnumerable<ISymbolicExpressionTreeNode> FindMatches(ISymbolicExpressionTreeNode root, ISymbolicExpressionTreeNode subtree, ISymbolicExpressionTreeNodeSimilarityComparer comp) {
    1717      var fragmentLength = subtree.GetLength();
    18       // below, we use ">=" for Match(n, subtree, comp) >= fragmentLength because in case of relaxed conditions,
    19       // we can have multiple matches of the same node
    20 
    21       return root.IterateNodesBreadth().Where(n => n.GetLength() >= fragmentLength && Match(n, subtree, comp) == fragmentLength);
     18      return root.IterateNodesBreadth().Where(n => n.GetLength() >= fragmentLength && Match(n, subtree, comp) >= fragmentLength);
    2219    }
    2320

  • branches/HeuristicLab.EvolutionTracking/HeuristicLab.Tracking.sln

    r10300 r10746  
    22Microsoft Visual Studio Solution File, Format Version 12.00
    33# Visual Studio 2013
    4 VisualStudioVersion = 12.0.21005.1
     4VisualStudioVersion = 12.0.30110.0
    55MinimumVisualStudioVersion = 10.0.40219.1
    66Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "Solution Items", "Solution Items", "{C80F4C35-CB87-4695-8A53-6F2D08275253}"
    … …  
    99    HeuristicLab.Tracking.vsmdi = HeuristicLab.Tracking.vsmdi
    1010    Local.testsettings = Local.testsettings
     11    Performance1.psess = Performance1.psess
    1112    PreBuildEvent.cmd = PreBuildEvent.cmd
    1213    TraceAndTestImpact.testsettings = TraceAndTestImpact.testsettings
    … …  
    169170    HideSolutionNode = FALSE
    170171  EndGlobalSection
     172  GlobalSection(Performance) = preSolution
     173    HasPerformanceSessions = true
     174  EndGlobalSection
    171175  GlobalSection(TestCaseManagementSettings) = postSolution
    172176    CategoryFile = HeuristicLab.Tracking.vsmdi
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