Changeset 10456 for branches/HeuristicLab.EvolutionTracking

Timestamp:

02/15/14 13:50:37 (11 years ago)

Author:

bburlacu

Message:

#1772: Merged trunk changes.

Location:

branches/HeuristicLab.EvolutionTracking

Files:

• HeuristicLab.Encodings.SymbolicExpressionTreeEncoding (modified) (1 prop)
• HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views (modified) (1 prop)
• HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views/3.4/SymbolicExpressionTreeChart.cs (modified) (2 diffs)
• HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/ArchitectureManipulators/MultiSymbolicExpressionTreeArchitectureManipulator.cs (modified) (1 diff)
• HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/Formatters/SymbolicExpressionTreeLatexFormatter.cs (modified) (3 diffs)
• HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/LayoutEngines/SymbolicExpressionTreeLayoutAdapter.cs (modified) (3 diffs)
• HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/Manipulators/MultiSymbolicExpressionTreeManipulator.cs (modified) (1 diff)
• HeuristicLab.EvolutionTracking.Views/3.4/HeuristicLab.EvolutionTracking.Views-3.4.csproj (modified) (2 diffs)
• HeuristicLab.EvolutionTracking.Views/3.4/Plugin.cs.frame (added)
• HeuristicLab.EvolutionTracking/3.4/Plugin.cs (deleted)
• HeuristicLab.EvolutionTracking/3.4/Plugin.cs.frame (added)
• HeuristicLab.Problems.DataAnalysis.Symbolic (modified) (1 prop)
• HeuristicLab.Problems.DataAnalysis.Symbolic.Views (modified) (1 prop)
• HeuristicLab.Problems.DataAnalysis.Symbolic.Views/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic.Views-3.4.csproj (modified) (1 diff)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisSingleObjectivePruningAnalyzer.cs (copied) (copied from trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Analyzers/SymbolicDataAnalysisSingleObjectivePruningAnalyzer.cs)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj (modified) (2 diffs)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisExpressionPruningOperator.cs (copied) (copied from trunk/sources/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisExpressionPruningOperator.cs)
• HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisExpressionTreeSimilarityCalculator.cs (modified) (2 diffs)
• HeuristicLab.Problems.TravelingSalesman (modified) (1 prop)
• HeuristicLab.Problems.TravelingSalesman.Views (modified) (1 prop)
• PreBuildEvent.cmd (modified) (1 diff)

branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views/3.4/SymbolicExpressionTreeChart.cs

@@ -51 +51 @@
       this.lineColor = Color.Black;
       this.backgroundColor = Color.White;
-      this.textFont = new Font("Times New Roman", 14);
+      this.textFont = new Font(FontFamily.GenericSerif, 14, GraphicsUnit.Pixel);
       layoutEngine = new ReingoldTilfordLayoutEngine<ISymbolicExpressionTreeNode>();
       layoutAdapter = new SymbolicExpressionTreeLayoutAdapter();
@@ -278 +278 @@
 
     #region methods for painting the symbolic expression tree
-
     private void DrawFunctionTree(ISymbolicExpressionTree symbolicExpressionTree, Graphics graphics, int preferredWidth, int preferredHeight, int minHDistance, int minVDistance) {
       var layoutNodes = layoutAdapter.Convert(symbolicExpressionTree).ToList();

branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/ArchitectureManipulators/MultiSymbolicExpressionTreeArchitectureManipulator.cs

@@ -106 +106 @@
       Operators = checkedItemList.AsReadOnly();
       Operators_ItemsAdded(this, new CollectionItemsChangedEventArgs<IndexedItem<ISymbolicExpressionTreeManipulator>>(Operators.CheckedItems));
+
+      SelectedOperatorParameter.ActualName = "SelectedManipulationOperator";
     }
 

branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/Formatters/SymbolicExpressionTreeLatexFormatter.cs

@@ -1 @@
-using System.Collections.Generic;
+using System;
+using System.Collections.Generic;
+using System.Globalization;
 using System.Linq;
 using System.Text;
@@ -8 +10 @@
   [Item("LaTeX/PDF Formatter", "Formatter for symbolic expression trees for use with latex.")]
   public class SymbolicExpressionTreeLatexFormatter : NamedItem, ISymbolicExpressionTreeStringFormatter {
-    private readonly static Dictionary<string, string> symbolNameMap = new Dictionary<string, string>
+    private readonly static Dictionary<string, string> SymbolNamesMap = new Dictionary<string, string>
     {
       {"ProgramRootSymbol", "Prog"},
-      {"StartSymbol","RPB"}
+      {"StartSymbol","RPB"},
+      {"Addition", "$+$"},
+      {"Subtraction", "$-$"},
+      {"Multiplication", "$\\times$"},
+      {"Division", "$\\div$"}
     };
     private readonly ReingoldTilfordLayoutEngine<ISymbolicExpressionTreeNode> layoutEngine;
     private readonly SymbolicExpressionTreeLayoutAdapter layoutAdapter;
 
-
     public SymbolicExpressionTreeLatexFormatter() {
       layoutEngine = new ReingoldTilfordLayoutEngine<ISymbolicExpressionTreeNode>();
+      layoutAdapter = new SymbolicExpressionTreeLayoutAdapter();
     }
 
@@ -37 +43 @@
       foreach (var ln in layoutNodes)
         layoutEngine.AddNode(ln.Content, ln);
+      layoutEngine.CalculateLayout();
       var nodeCoordinates = layoutEngine.GetNodeCoordinates();
       var sb = new StringBuilder();
-      sb.AppendLine("\\begin{figure}");
-      sb.AppendLine("\\begin{tikzpicture}");
+      var nl = Environment.NewLine;
+      sb.Append("\\documentclass[class=minimal,border=0pt]{standalone}" + nl +
+                "\\usepackage{tikz}" + nl +
+                "\\begin{document}" + nl +
+                "\\begin{tikzpicture}" + nl +
+                "\\def\\ws{1}" + nl +
+                "\\def\\hs{0.7}" + nl);
 
-      foreach (var node in symbolicExpressionTree.IterateNodesBreadth()) {
+      const double ws = 1.0, hs = 0.7; // some scaling factors useful for fine-tuning document appearance before latex compilation
+      var nodes = symbolicExpressionTree.IterateNodesBreadth().ToList();
+      var nodeIndices = new Dictionary<ISymbolicExpressionTreeNode, int>();
+      for (int i = 0; i < nodes.Count; ++i) {
+        var node = nodes[i];
+        nodeIndices.Add(node, i);
         var symbolName = node.Symbol.Name;
-        var nodeName = symbolNameMap.ContainsKey(symbolName) ? symbolNameMap[symbolName] : symbolName;
+        var nodeName = SymbolNamesMap.ContainsKey(symbolName) ? SymbolNamesMap[symbolName] : symbolName;
         var coord = nodeCoordinates[node];
 
-        sb.AppendLine(string.Format("\\draw node ({0},{1}) {{{2}}};", coord.X, coord.Y, nodeName));
+        sb.AppendLine(string.Format(CultureInfo.InvariantCulture, "\\node ({0}) at (\\ws*{1},\\hs*{2}) {{{3}}};", i, ws * coord.X, -hs * coord.Y, EscapeLatexString(nodeName)));
       }
 
-      sb.AppendLine("\\end{figure}");
-      sb.AppendLine("\\end{tikzpicture}");
+      for (int i = 0; i < nodes.Count; ++i) {
+        foreach (var s in nodes[i].Subtrees) {
+          sb.AppendLine(string.Format(CultureInfo.InvariantCulture, "\\draw ({0}) -- ({1});", i, nodeIndices[s]));
+        }
+      }
+
+      sb.AppendLine("\\end{tikzpicture}" + nl + "\\end{document}" + nl);
 
       return sb.ToString();
     }
+
+    private static string EscapeLatexString(string s) {
+      return s.Replace("\\", "\\\\").Replace("{", "\\{").Replace("}", "\\}").Replace("_", "\\_");
+    }
   }
 }

branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/LayoutEngines/SymbolicExpressionTreeLayoutAdapter.cs

@@ -28 +28 @@
   public class SymbolicExpressionTreeLayoutAdapter : ILayoutAdapter<ISymbolicExpressionTreeNode> {
     // default conversion function between ISymbolicExpressionTreeNode and ILayoutNode<ISymbolicExpressionTree>
-    ILayoutNode<ISymbolicExpressionTreeNode> defaultConvert(ISymbolicExpressionTreeNode node) {
+    static ILayoutNode<ISymbolicExpressionTreeNode> DefaultConvert(ISymbolicExpressionTreeNode node) {
       var layoutNode = new LayoutNode<ISymbolicExpressionTreeNode> { Content = node };
       layoutNode.Ancestor = layoutNode;
@@ -40 +40 @@
     // return an enumerable containing all the layout nodes
     public IEnumerable<ILayoutNode<ISymbolicExpressionTreeNode>> Convert(ISymbolicExpressionTreeNode root, Func<ISymbolicExpressionTreeNode, ILayoutNode<ISymbolicExpressionTreeNode>> convertFunc = null) {
-      var rootLayoutNode = convertFunc == null ? defaultConvert(root) : convertFunc(root);
+      var rootLayoutNode = convertFunc == null ? DefaultConvert(root) : convertFunc(root);
       rootLayoutNode.Ancestor = rootLayoutNode;
 
@@ -63 +63 @@
       for (int i = 0; i < layoutNode.Content.SubtreeCount; ++i) {
         var subtree = layoutNode.Content.GetSubtree(i);
-        var childLayoutNode = convertFunc == null ? defaultConvert(subtree) : convertFunc(subtree);
+        var childLayoutNode = convertFunc == null ? DefaultConvert(subtree) : convertFunc(subtree);
         childLayoutNode.Parent = layoutNode;
         childLayoutNode.Number = i;

branches/HeuristicLab.EvolutionTracking/HeuristicLab.Encodings.SymbolicExpressionTreeEncoding/3.4/Manipulators/MultiSymbolicExpressionTreeManipulator.cs

@@ -83 +83 @@
       Operators = checkedItemList.AsReadOnly();
       Operators_ItemsAdded(this, new CollectionItemsChangedEventArgs<IndexedItem<ISymbolicExpressionTreeManipulator>>(Operators.CheckedItems));
+
+      SelectedOperatorParameter.ActualName = "SelectedManipulationOperator";
     }
 

branches/HeuristicLab.EvolutionTracking/HeuristicLab.EvolutionTracking.Views/3.4/HeuristicLab.EvolutionTracking.Views-3.4.csproj

@@ -116 +116 @@
       <DependentUpon>FrequentFragmentsDialog.cs</DependentUpon>
     </Compile>
-    <Compile Include="GenealogyGraphChart.cs">
-      <SubType>UserControl</SubType>
-    </Compile>
+    <Compile Include="GenealogyGraphChart.cs" />
     <Compile Include="GenealogyGraphChart.Designer.cs">
       <DependentUpon>GenealogyGraphChart.cs</DependentUpon>
@@ -132 +130 @@
       <DependentUpon>Resources.resx</DependentUpon>
     </Compile>
-    <Compile Include="GenealogyGraphView.cs">
-      <SubType>UserControl</SubType>
-    </Compile>
+    <Compile Include="GenealogyGraphView.cs" />
     <Compile Include="GenealogyGraphView.Designer.cs">
       <DependentUpon>GenealogyGraphView.cs</DependentUpon>

branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic.Views/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic.Views-3.4.csproj

@@ -300 +300 @@
   </ItemGroup>
   <ItemGroup>
-    <ProjectReference Include="..\..\..\HeuristicLab.EvolutionaryTracking\HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views\3.4\HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views-3.4.csproj">
+    <ProjectReference Include="..\..\HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views\3.4\HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views-3.4.csproj">
       <Project>{423bd94f-963a-438e-ba45-3bb3d61cd03b}</Project>
       <Name>HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Views-3.4</Name>

branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/HeuristicLab.Problems.DataAnalysis.Symbolic-3.4.csproj

@@ -173 +173 @@
   </ItemGroup>
   <ItemGroup>
+    <Compile Include="Analyzers\SymbolicDataAnalysisSingleObjectivePruningAnalyzer.cs" 
     <Compile Include="Analyzers\SymbolicDataAnalysisGenealogyAnalyzer.cs" />
     <Compile Include="Analyzers\SymbolicDataAnalysisPopulationDiversityAnalyzer.cs" />
@@ -188 +189 @@
       <SubType>Code</SubType>
     </Compile>
+    <Compile Include="SymbolicDataAnalysisExpressionPruningOperator.cs" />
     <Compile Include="SlidingWindow\GenerationalSlidingWindowAnalyzer.cs" />
     <Compile Include="SlidingWindow\OffspringSelectionSlidingWindowAnalyzer.cs" />

branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/SymbolicDataAnalysisExpressionTreeSimilarityCalculator.cs

@@ -40 +40 @@
 
     public IScopeTreeLookupParameter<ISymbolicExpressionTree> SymbolicExpressionTreeParameter {
-      get {
-        return (IScopeTreeLookupParameter<ISymbolicExpressionTree>)Parameters[SymbolicExpressionTreeParameterName];
-      }
+      get { return (IScopeTreeLookupParameter<ISymbolicExpressionTree>)Parameters[SymbolicExpressionTreeParameterName]; }
     }
 
@@ -90 +88 @@
     public SymbolicDataAnalysisExpressionTreeSimilarityCalculator()
       : base() {
-      Parameters.Add(new ScopeTreeLookupParameter<ISymbolicExpressionTree>(SymbolicExpressionTreeParameterName,
-        "The symbolic expression trees to analyze."));
+      Parameters.Add(new ScopeTreeLookupParameter<ISymbolicExpressionTree>(SymbolicExpressionTreeParameterName, "The symbolic expression trees to analyze."));
       Parameters.Add(new ValueParameter<ISymbolicExpressionTree>(CurrentSymbolicExpressionTreeParameterName, ""));
-      Parameters.Add(new LookupParameter<BoolValue>(MatchVariablesParameterName,
-        "Specify if the symbolic expression tree comparer should match variable names."));
-      Parameters.Add(new LookupParameter<BoolValue>(MatchVariableWeightsParameterName,
-        "Specify if the symbolic expression tree comparer should match variable weights."));
-      Parameters.Add(new LookupParameter<BoolValue>(MatchConstantValuesParameterName,
-        "Specify if the symbolic expression tree comparer should match constant values."));
+      Parameters.Add(new LookupParameter<BoolValue>(MatchVariablesParameterName, "Specify if the symbolic expression tree comparer should match variable names."));
+      Parameters.Add(new LookupParameter<BoolValue>(MatchVariableWeightsParameterName, "Specify if the symbolic expression tree comparer should match variable weights."));
+      Parameters.Add(new LookupParameter<BoolValue>(MatchConstantValuesParameterName, "Specify if the symbolic expression tree comparer should match constant values."));
       Parameters.Add(new LookupParameter<DoubleValue>(SimilarityValuesParmeterName, ""));
     }

branches/HeuristicLab.EvolutionTracking/PreBuildEvent.cmd

@@ -1 @@
-SubWCRev "%ProjectDir%\" "%ProjectDir%\Properties\AssemblyInfo.frame" "%ProjectDir%\Properties\AssemblyInfo.cs"
-SubWCRev "%ProjectDir%\" "%ProjectDir%\Plugin.cs.frame" "%ProjectDir%\Plugin.cs"
+IF EXIST "%ProjectDir%\Properties\AssemblyInfo.cs.frame" SubWCRev "%ProjectDir%\" "%ProjectDir%\Properties\AssemblyInfo.cs.frame" "%ProjectDir%\Properties\AssemblyInfo.cs"
+IF %ERRORLEVEL% NEQ 0 GOTO Error_Handling
+IF EXIST "%ProjectDir%\Plugin.cs.frame" SubWCRev "%ProjectDir%\" "%ProjectDir%\Plugin.cs.frame" "%ProjectDir%\Plugin.cs"
+IF %ERRORLEVEL% NEQ 0 GOTO Error_Handling
+GOTO Done
+
+:Error_Handling
+ECHO There was an error while running subwcrev. Please verify that the *.cs.frame files have been correctly converted to *.cs files, otherwise HeuristicLab won't build. 
+exit 0
+
+:Done
+