[7849] | 1 | #region License Information
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| 2 | /* HeuristicLab
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[12012] | 3 | * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
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[7849] | 4 | *
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| 5 | * This file is part of HeuristicLab.
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| 6 | *
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| 7 | * HeuristicLab is free software: you can redistribute it and/or modify
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| 8 | * it under the terms of the GNU General Public License as published by
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| 9 | * the Free Software Foundation, either version 3 of the License, or
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| 10 | * (at your option) any later version.
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| 11 | *
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| 12 | * HeuristicLab is distributed in the hope that it will be useful,
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| 13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 15 | * GNU General Public License for more details.
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| 16 | *
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| 17 | * You should have received a copy of the GNU General Public License
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| 18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
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| 19 | */
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| 20 | #endregion
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| 21 |
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| 22 |
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| 23 | using System;
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| 24 | using System.Collections;
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| 25 | using System.Collections.Generic;
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[13526] | 26 | using System.Diagnostics.Contracts;
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[7849] | 27 | using System.Globalization;
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| 28 | using System.IO;
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| 29 | using System.Linq;
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| 30 | using System.Runtime.Serialization;
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[13440] | 31 | using System.Text;
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[7849] | 32 |
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| 33 | namespace HeuristicLab.Problems.Instances.DataAnalysis {
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[13414] | 34 | public class TableFileParser : Progress<long> { // reports the number of bytes read
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[8564] | 35 | private const int BUFFER_SIZE = 65536;
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[9652] | 36 | // char used to symbolize whitespaces (no missing values can be handled with whitespaces)
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| 37 | private const char WHITESPACECHAR = (char)0;
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| 38 | private static readonly char[] POSSIBLE_SEPARATORS = new char[] { ',', ';', '\t', WHITESPACECHAR };
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[7849] | 39 | private Tokenizer tokenizer;
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[13440] | 40 | private int estimatedNumberOfLines = 200; // initial capacity for columns, will be set automatically when data is read from a file
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[7849] | 41 |
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[13584] | 42 |
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| 43 | private Encoding encoding = Encoding.Default;
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| 44 |
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| 45 | public Encoding Encoding {
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| 46 | get { return encoding; }
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| 47 | set {
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| 48 | if (value == null) throw new ArgumentNullException("Encoding");
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| 49 | encoding = value;
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| 50 | }
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| 51 | }
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| 52 |
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| 53 |
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[7849] | 54 | private int rows;
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| 55 | public int Rows {
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| 56 | get { return rows; }
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| 57 | set { rows = value; }
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| 58 | }
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| 59 |
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| 60 | private int columns;
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| 61 | public int Columns {
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| 62 | get { return columns; }
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| 63 | set { columns = value; }
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| 64 | }
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| 65 |
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| 66 | private List<IList> values;
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| 67 | public List<IList> Values {
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| 68 | get {
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| 69 | return values;
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| 70 | }
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| 71 | }
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| 72 |
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| 73 | private List<string> variableNames;
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| 74 | public IEnumerable<string> VariableNames {
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| 75 | get {
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| 76 | if (variableNames.Count > 0) return variableNames;
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| 77 | else {
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| 78 | string[] names = new string[columns];
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| 79 | for (int i = 0; i < names.Length; i++) {
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| 80 | names[i] = "X" + i.ToString("000");
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| 81 | }
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| 82 | return names;
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| 83 | }
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| 84 | }
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| 85 | }
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| 86 |
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| 87 | public TableFileParser() {
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| 88 | variableNames = new List<string>();
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| 89 | }
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| 90 |
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[9608] | 91 | public bool AreColumnNamesInFirstLine(string fileName) {
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| 92 | NumberFormatInfo numberFormat;
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| 93 | DateTimeFormatInfo dateTimeFormatInfo;
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| 94 | char separator;
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| 95 | DetermineFileFormat(fileName, out numberFormat, out dateTimeFormatInfo, out separator);
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| 96 | using (var stream = new FileStream(fileName, FileMode.Open, FileAccess.Read, FileShare.ReadWrite)) {
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| 97 | return AreColumnNamesInFirstLine(stream, numberFormat, dateTimeFormatInfo, separator);
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| 98 | }
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| 99 | }
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| 100 |
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| 101 | public bool AreColumnNamesInFirstLine(Stream stream) {
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| 102 | NumberFormatInfo numberFormat = NumberFormatInfo.InvariantInfo;
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| 103 | DateTimeFormatInfo dateTimeFormatInfo = DateTimeFormatInfo.InvariantInfo;
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| 104 | char separator = ',';
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| 105 | return AreColumnNamesInFirstLine(stream, numberFormat, dateTimeFormatInfo, separator);
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| 106 | }
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| 107 |
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| 108 | public bool AreColumnNamesInFirstLine(string fileName, NumberFormatInfo numberFormat,
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| 109 | DateTimeFormatInfo dateTimeFormatInfo, char separator) {
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| 110 | using (var stream = new FileStream(fileName, FileMode.Open, FileAccess.Read, FileShare.ReadWrite)) {
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| 111 | return AreColumnNamesInFirstLine(stream, numberFormat, dateTimeFormatInfo, separator);
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| 112 | }
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| 113 | }
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| 114 |
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| 115 | public bool AreColumnNamesInFirstLine(Stream stream, NumberFormatInfo numberFormat,
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| 116 | DateTimeFormatInfo dateTimeFormatInfo, char separator) {
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[13584] | 117 | using (StreamReader reader = new StreamReader(stream, Encoding)) {
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[9608] | 118 | tokenizer = new Tokenizer(reader, numberFormat, dateTimeFormatInfo, separator);
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[13440] | 119 | return (tokenizer.PeekType() != TokenTypeEnum.Double);
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[9608] | 120 | }
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| 121 | }
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| 122 |
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[7851] | 123 | /// <summary>
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| 124 | /// Parses a file and determines the format first
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| 125 | /// </summary>
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| 126 | /// <param name="fileName">file which is parsed</param>
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[9608] | 127 | /// <param name="columnNamesInFirstLine"></param>
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[13413] | 128 | public void Parse(string fileName, bool columnNamesInFirstLine, int lineLimit = -1) {
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[7851] | 129 | NumberFormatInfo numberFormat;
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| 130 | DateTimeFormatInfo dateTimeFormatInfo;
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| 131 | char separator;
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[9608] | 132 | DetermineFileFormat(fileName, out numberFormat, out dateTimeFormatInfo, out separator);
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[13440] | 133 | EstimateNumberOfLines(fileName);
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[13413] | 134 | Parse(new FileStream(fileName, FileMode.Open, FileAccess.Read, FileShare.ReadWrite), numberFormat, dateTimeFormatInfo, separator, columnNamesInFirstLine, lineLimit);
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[7851] | 135 | }
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| 136 |
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| 137 | /// <summary>
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| 138 | /// Parses a file with the given formats
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| 139 | /// </summary>
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| 140 | /// <param name="fileName">file which is parsed</param>
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| 141 | /// <param name="numberFormat">Format of numbers</param>
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| 142 | /// <param name="dateTimeFormatInfo">Format of datetime</param>
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| 143 | /// <param name="separator">defines the separator</param>
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[9608] | 144 | /// <param name="columnNamesInFirstLine"></param>
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[13413] | 145 | public void Parse(string fileName, NumberFormatInfo numberFormat, DateTimeFormatInfo dateTimeFormatInfo, char separator, bool columnNamesInFirstLine, int lineLimit = -1) {
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[13440] | 146 | EstimateNumberOfLines(fileName);
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[9608] | 147 | using (var stream = new FileStream(fileName, FileMode.Open, FileAccess.Read, FileShare.ReadWrite)) {
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[13413] | 148 | Parse(stream, numberFormat, dateTimeFormatInfo, separator, columnNamesInFirstLine, lineLimit);
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[9608] | 149 | }
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[7849] | 150 | }
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| 151 |
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[13440] | 152 | // determines the number of newline characters in the first 64KB to guess the number of rows for a file
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| 153 | private void EstimateNumberOfLines(string fileName) {
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| 154 | var len = new System.IO.FileInfo(fileName).Length;
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[13526] | 155 | var buf = new char[1024 * 1024];
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[13584] | 156 | using (var reader = new StreamReader(fileName, Encoding)) {
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[13445] | 157 | reader.ReadBlock(buf, 0, buf.Length);
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| 158 | }
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[13440] | 159 | int numNewLine = 0;
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[13442] | 160 | int charsInCurrentLine = 0, charsInFirstLine = 0; // the first line (names) and the last line (incomplete) are not representative
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| 161 | foreach (var ch in buf) {
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| 162 | charsInCurrentLine++;
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| 163 | if (ch == '\n') {
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| 164 | if (numNewLine == 0) charsInFirstLine = charsInCurrentLine; // store the number of chars in the first line
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| 165 | charsInCurrentLine = 0;
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| 166 | numNewLine++;
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| 167 | }
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| 168 | }
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| 169 | if (numNewLine <= 1) {
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[13440] | 170 | // fail -> keep the default setting
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| 171 | return;
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| 172 | } else {
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[13442] | 173 | double charsPerLineFactor = (buf.Length - charsInFirstLine - charsInCurrentLine) / ((double)numNewLine - 1);
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[13440] | 174 | double estimatedLines = len / charsPerLineFactor;
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| 175 | estimatedNumberOfLines = (int)Math.Round(estimatedLines * 1.1); // pessimistic allocation of 110% to make sure that the list is very likely large enough
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| 176 | }
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| 177 | }
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| 178 |
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[7851] | 179 | /// <summary>
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| 180 | /// Takes a Stream and parses it with default format. NumberFormatInfo.InvariantInfo, DateTimeFormatInfo.InvariantInfo and separator = ','
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| 181 | /// </summary>
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| 182 | /// <param name="stream">stream which is parsed</param>
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[9608] | 183 | /// <param name="columnNamesInFirstLine"></param>
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[13413] | 184 | public void Parse(Stream stream, bool columnNamesInFirstLine, int lineLimit = -1) {
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[7851] | 185 | NumberFormatInfo numberFormat = NumberFormatInfo.InvariantInfo;
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| 186 | DateTimeFormatInfo dateTimeFormatInfo = DateTimeFormatInfo.InvariantInfo;
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| 187 | char separator = ',';
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[13413] | 188 | Parse(stream, numberFormat, dateTimeFormatInfo, separator, columnNamesInFirstLine, lineLimit);
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[7851] | 189 | }
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| 190 |
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| 191 | /// <summary>
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| 192 | /// Parses a stream with the given formats.
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| 193 | /// </summary>
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| 194 | /// <param name="stream">Stream which is parsed</param>
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| 195 | /// <param name="numberFormat">Format of numbers</param>
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| 196 | /// <param name="dateTimeFormatInfo">Format of datetime</param>
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| 197 | /// <param name="separator">defines the separator</param>
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[9608] | 198 | /// <param name="columnNamesInFirstLine"></param>
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[13413] | 199 | public void Parse(Stream stream, NumberFormatInfo numberFormat, DateTimeFormatInfo dateTimeFormatInfo, char separator, bool columnNamesInFirstLine, int lineLimit = -1) {
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[13584] | 200 | using (StreamReader reader = new StreamReader(stream, Encoding)) {
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[7849] | 201 | tokenizer = new Tokenizer(reader, numberFormat, dateTimeFormatInfo, separator);
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[13440] | 202 | values = new List<IList>();
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| 203 | if (lineLimit > 0) estimatedNumberOfLines = lineLimit;
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[13447] | 204 |
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| 205 | if (columnNamesInFirstLine) {
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| 206 | ParseVariableNames();
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| 207 | if (!tokenizer.HasNext())
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| 208 | Error(
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| 209 | "Couldn't parse data values. Probably because of incorrect number format (the parser expects english number format with a '.' as decimal separator).",
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| 210 | "", tokenizer.CurrentLineNumber);
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| 211 | }
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| 212 |
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| 213 |
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| 214 | // read values... start in first row
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| 215 | int nLinesParsed = 0;
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| 216 | int colIdx = 0;
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| 217 | int numValuesInFirstRow = columnNamesInFirstLine ? variableNames.Count : -1; // number of variables or inizialize based on first row of values (-1)
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| 218 | while (tokenizer.HasNext() && (lineLimit < 0 || nLinesParsed < lineLimit)) {
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| 219 | if (tokenizer.PeekType() == TokenTypeEnum.NewLine) {
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| 220 | tokenizer.Skip();
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| 221 |
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| 222 | // all rows have to have the same number of values
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| 223 | // the first row defines how many samples are needed
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| 224 | if (numValuesInFirstRow < 0) numValuesInFirstRow = values.Count; // set to number of colums in the first row
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| 225 | else if (colIdx > 0 && numValuesInFirstRow != colIdx) { // read at least one value in the row (support for skipping empty lines)
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| 226 | Error("The first row of the dataset has " + numValuesInFirstRow + " columns." + Environment.NewLine +
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| 227 | "Line " + tokenizer.CurrentLineNumber + " has " + colIdx + " columns.", "",
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| 228 | tokenizer.CurrentLineNumber);
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[13440] | 229 | }
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[13447] | 230 | OnReport(tokenizer.BytesRead);
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| 231 |
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| 232 | nLinesParsed++;
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| 233 | colIdx = 0;
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[13440] | 234 | } else {
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[13447] | 235 | // read one value
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| 236 | TokenTypeEnum type; string strVal; double dblVal; DateTime dateTimeVal;
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| 237 | tokenizer.Next(out type, out strVal, out dblVal, out dateTimeVal);
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| 238 |
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| 239 | // initialize columns on the first row (fixing data types as presented in the first row...)
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| 240 | if (nLinesParsed == 0) {
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| 241 | values.Add(CreateList(type, estimatedNumberOfLines));
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| 242 | } else if (colIdx == values.Count) {
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| 243 | Error("The first row of the dataset has " + numValuesInFirstRow + " columns." + Environment.NewLine +
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| 244 | "Line " + tokenizer.CurrentLineNumber + " has more columns.", "",
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| 245 | tokenizer.CurrentLineNumber);
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[13440] | 246 | }
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[13526] | 247 | if (!IsColumnTypeCompatible(values[colIdx], type)) {
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| 248 | values[colIdx] = ConvertToStringColumn(values[colIdx]);
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| 249 | }
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[13447] | 250 | // add the value to the column
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| 251 | AddValue(type, values[colIdx++], strVal, dblVal, dateTimeVal);
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[13440] | 252 | }
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[7849] | 253 | }
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| 254 |
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[13440] | 255 | if (!values.Any() || values.First().Count == 0)
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[13447] | 256 | Error("Couldn't parse data values. Probably because of incorrect number format " +
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| 257 | "(the parser expects english number format with a '.' as decimal separator).", "", tokenizer.CurrentLineNumber);
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[7849] | 258 | }
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| 259 |
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[13441] | 260 | this.rows = values.First().Count;
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[13447] | 261 | this.columns = values.Count;
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[13441] | 262 |
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[13440] | 263 | // after everything has been parsed make sure the lists are as compact as possible
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| 264 | foreach (var l in values) {
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| 265 | var dblList = l as List<double>;
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| 266 | var byteList = l as List<byte>;
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| 267 | var dateList = l as List<DateTime>;
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| 268 | var stringList = l as List<string>;
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| 269 | var objList = l as List<object>;
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| 270 | if (dblList != null) dblList.TrimExcess();
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| 271 | if (byteList != null) byteList.TrimExcess();
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| 272 | if (dateList != null) dateList.TrimExcess();
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| 273 | if (stringList != null) stringList.TrimExcess();
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| 274 | if (objList != null) objList.TrimExcess();
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[7849] | 275 | }
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[13442] | 276 |
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| 277 | // for large files we created a lot of memory pressure, cannot hurt to run GC.Collect here (TableFileParser is called seldomly on user interaction)
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| 278 | GC.Collect(2, GCCollectionMode.Forced);
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[7849] | 279 | }
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| 280 |
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[13447] | 281 | #region type-dependent dispatch
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[13526] | 282 | private bool IsColumnTypeCompatible(IList list, TokenTypeEnum tokenType) {
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| 283 | return (list is List<string>) || // all tokens can be added to a string list
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| 284 | (tokenType == TokenTypeEnum.Missing) || // empty entries are allowed in all columns
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| 285 | (tokenType == TokenTypeEnum.Double && list is List<double>) ||
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| 286 | (tokenType == TokenTypeEnum.DateTime && list is List<DateTime>);
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| 287 | }
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| 288 |
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| 289 | // all columns are converted to string columns when we find an non-empty value that has incorrect type
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| 290 | private IList ConvertToStringColumn(IList list) {
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| 291 | var dblL = list as List<double>;
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| 292 | if (dblL != null) {
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| 293 | var l = new List<string>(dblL.Capacity);
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| 294 | l.AddRange(dblL.Select(dbl => dbl.ToString()));
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| 295 | return l;
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[13447] | 296 | }
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[13526] | 297 |
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| 298 | var dtL = list as List<DateTime>;
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| 299 | if (dtL != null) {
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| 300 | var l = new List<string>(dtL.Capacity);
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| 301 | l.AddRange(dtL.Select(dbl => dbl.ToString()));
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| 302 | return l;
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| 303 | }
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| 304 |
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| 305 | if (list is List<string>) return list;
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| 306 |
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| 307 | throw new InvalidProgramException(string.Format("Cannot convert column of type {0} to string column", list.GetType()));
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[13447] | 308 | }
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| 309 |
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[13526] | 310 | private void AddValue(TokenTypeEnum type, IList list, string strVal, double dblVal, DateTime dateTimeVal) {
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[13447] | 311 | var dblList = list as List<double>;
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[13526] | 312 | if (dblList != null) {
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| 313 | AddValue(type, dblList, dblVal);
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| 314 | return;
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[13447] | 315 | }
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| 316 |
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| 317 | var strList = list as List<string>;
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[13526] | 318 | if (strList != null) {
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| 319 | AddValue(type, strList, strVal);
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| 320 | return;
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[13447] | 321 | }
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[13526] | 322 | var dtList = list as List<DateTime>;
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| 323 | if (dtList != null) {
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| 324 | AddValue(type, dtList, dateTimeVal);
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| 325 | return;
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| 326 | }
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| 327 |
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| 328 | list.Add(strVal); // assumes List<object>
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[13447] | 329 | }
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| 330 |
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[13526] | 331 | private void AddValue(TokenTypeEnum type, List<double> list, double dblVal) {
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| 332 | Contract.Assert(type == TokenTypeEnum.Missing || type == TokenTypeEnum.Double);
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| 333 | list.Add(type == TokenTypeEnum.Missing ? double.NaN : dblVal);
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[13447] | 334 | }
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| 335 |
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[13526] | 336 | private void AddValue(TokenTypeEnum type, List<string> list, string strVal) {
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| 337 | // assumes that strVal is always set to the original token read from the input file
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| 338 | list.Add(type == TokenTypeEnum.Missing ? string.Empty : strVal);
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| 339 | }
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| 340 |
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| 341 | private void AddValue(TokenTypeEnum type, List<DateTime> list, DateTime dtVal) {
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| 342 | Contract.Assert(type == TokenTypeEnum.Missing || type == TokenTypeEnum.DateTime);
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| 343 | list.Add(type == TokenTypeEnum.Missing ? DateTime.MinValue : dtVal);
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| 344 | }
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| 345 |
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[13447] | 346 | private IList CreateList(TokenTypeEnum type, int estimatedNumberOfLines) {
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| 347 | switch (type) {
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| 348 | case TokenTypeEnum.String:
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| 349 | return new List<string>(estimatedNumberOfLines);
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| 350 | case TokenTypeEnum.Double:
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[13526] | 351 | case TokenTypeEnum.Missing: // assume double columns
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[13447] | 352 | return new List<double>(estimatedNumberOfLines);
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| 353 | case TokenTypeEnum.DateTime:
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| 354 | return new List<DateTime>(estimatedNumberOfLines);
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| 355 | default:
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| 356 | throw new InvalidOperationException();
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| 357 | }
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| 358 | }
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| 359 | #endregion
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| 360 |
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[7849] | 361 | public static void DetermineFileFormat(string path, out NumberFormatInfo numberFormat, out DateTimeFormatInfo dateTimeFormatInfo, out char separator) {
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[8885] | 362 | DetermineFileFormat(new FileStream(path, FileMode.Open, FileAccess.Read, FileShare.ReadWrite), out numberFormat, out dateTimeFormatInfo, out separator);
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[7849] | 363 | }
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| 364 |
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| 365 | public static void DetermineFileFormat(Stream stream, out NumberFormatInfo numberFormat, out DateTimeFormatInfo dateTimeFormatInfo, out char separator) {
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| 366 | using (StreamReader reader = new StreamReader(stream)) {
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| 367 | // skip first line
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| 368 | reader.ReadLine();
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| 369 | // read a block
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| 370 | char[] buffer = new char[BUFFER_SIZE];
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| 371 | int charsRead = reader.ReadBlock(buffer, 0, BUFFER_SIZE);
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| 372 | // count frequency of special characters
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| 373 | Dictionary<char, int> charCounts = buffer.Take(charsRead)
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| 374 | .GroupBy(c => c)
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| 375 | .ToDictionary(g => g.Key, g => g.Count());
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| 376 |
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| 377 | // depending on the characters occuring in the block
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| 378 | // we distinghish a number of different cases based on the the following rules:
|
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| 379 | // many points => it must be English number format, the other frequently occuring char is the separator
|
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| 380 | // no points but many commas => this is the problematic case. Either German format (real numbers) or English format (only integer numbers) with ',' as separator
|
---|
| 381 | // => check the line in more detail:
|
---|
| 382 | // English: 0, 0, 0, 0
|
---|
| 383 | // German: 0,0 0,0 0,0 ...
|
---|
| 384 | // => if commas are followed by space => English format
|
---|
| 385 | // no points no commas => English format (only integer numbers) use the other frequently occuring char as separator
|
---|
| 386 | // in all cases only treat ' ' as separator if no other separator is possible (spaces can also occur additionally to separators)
|
---|
| 387 | if (OccurrencesOf(charCounts, '.') > 10) {
|
---|
| 388 | numberFormat = NumberFormatInfo.InvariantInfo;
|
---|
| 389 | dateTimeFormatInfo = DateTimeFormatInfo.InvariantInfo;
|
---|
| 390 | separator = POSSIBLE_SEPARATORS
|
---|
| 391 | .Where(c => OccurrencesOf(charCounts, c) > 10)
|
---|
| 392 | .OrderBy(c => -OccurrencesOf(charCounts, c))
|
---|
| 393 | .DefaultIfEmpty(' ')
|
---|
| 394 | .First();
|
---|
| 395 | } else if (OccurrencesOf(charCounts, ',') > 10) {
|
---|
| 396 | // no points and many commas
|
---|
| 397 | // count the number of tokens (chains of only digits and commas) that contain multiple comma characters
|
---|
| 398 | int tokensWithMultipleCommas = 0;
|
---|
| 399 | for (int i = 0; i < charsRead; i++) {
|
---|
| 400 | int nCommas = 0;
|
---|
| 401 | while (i < charsRead && (buffer[i] == ',' || Char.IsDigit(buffer[i]))) {
|
---|
| 402 | if (buffer[i] == ',') nCommas++;
|
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| 403 | i++;
|
---|
| 404 | }
|
---|
| 405 | if (nCommas > 2) tokensWithMultipleCommas++;
|
---|
| 406 | }
|
---|
| 407 | if (tokensWithMultipleCommas > 1) {
|
---|
| 408 | // English format (only integer values) with ',' as separator
|
---|
| 409 | numberFormat = NumberFormatInfo.InvariantInfo;
|
---|
| 410 | dateTimeFormatInfo = DateTimeFormatInfo.InvariantInfo;
|
---|
| 411 | separator = ',';
|
---|
| 412 | } else {
|
---|
[13526] | 413 | char[] disallowedSeparators = new char[] { ',' }; // n. def. contains a space so ' ' should be disallowed to, however existing unit tests would fail
|
---|
[7849] | 414 | // German format (real values)
|
---|
| 415 | numberFormat = NumberFormatInfo.GetInstance(new CultureInfo("de-DE"));
|
---|
| 416 | dateTimeFormatInfo = DateTimeFormatInfo.GetInstance(new CultureInfo("de-DE"));
|
---|
| 417 | separator = POSSIBLE_SEPARATORS
|
---|
| 418 | .Except(disallowedSeparators)
|
---|
| 419 | .Where(c => OccurrencesOf(charCounts, c) > 10)
|
---|
| 420 | .OrderBy(c => -OccurrencesOf(charCounts, c))
|
---|
[13584] | 421 | .DefaultIfEmpty(' ')
|
---|
[7849] | 422 | .First();
|
---|
| 423 | }
|
---|
| 424 | } else {
|
---|
| 425 | // no points and no commas => English format
|
---|
| 426 | numberFormat = NumberFormatInfo.InvariantInfo;
|
---|
| 427 | dateTimeFormatInfo = DateTimeFormatInfo.InvariantInfo;
|
---|
| 428 | separator = POSSIBLE_SEPARATORS
|
---|
| 429 | .Where(c => OccurrencesOf(charCounts, c) > 10)
|
---|
| 430 | .OrderBy(c => -OccurrencesOf(charCounts, c))
|
---|
| 431 | .DefaultIfEmpty(' ')
|
---|
| 432 | .First();
|
---|
| 433 | }
|
---|
| 434 | }
|
---|
| 435 | }
|
---|
| 436 |
|
---|
| 437 | private static int OccurrencesOf(Dictionary<char, int> charCounts, char c) {
|
---|
| 438 | return charCounts.ContainsKey(c) ? charCounts[c] : 0;
|
---|
| 439 | }
|
---|
| 440 |
|
---|
| 441 | #region tokenizer
|
---|
[13447] | 442 | // the tokenizer reads full lines and returns separated tokens in the line as well as a terminating end-of-line character
|
---|
[7849] | 443 | internal enum TokenTypeEnum {
|
---|
[13526] | 444 | NewLine, String, Double, DateTime, Missing
|
---|
[7849] | 445 | }
|
---|
| 446 |
|
---|
| 447 | internal class Tokenizer {
|
---|
| 448 | private StreamReader reader;
|
---|
[13411] | 449 | // we assume that a buffer of 1024 tokens for a line is sufficient most of the time (the buffer is increased below if necessary)
|
---|
| 450 | private TokenTypeEnum[] tokenTypes = new TokenTypeEnum[1024];
|
---|
| 451 | private string[] stringVals = new string[1024];
|
---|
| 452 | private double[] doubleVals = new double[1024];
|
---|
| 453 | private DateTime[] dateTimeVals = new DateTime[1024];
|
---|
| 454 | private int tokenPos;
|
---|
| 455 | private int numTokens;
|
---|
[7849] | 456 | private NumberFormatInfo numberFormatInfo;
|
---|
| 457 | private DateTimeFormatInfo dateTimeFormatInfo;
|
---|
| 458 | private char separator;
|
---|
| 459 |
|
---|
[13447] | 460 | // arrays for string.Split()
|
---|
| 461 | private readonly char[] whiteSpaceSeparators = new char[0]; // string split uses separators as default
|
---|
| 462 | private readonly char[] separators;
|
---|
| 463 |
|
---|
[7849] | 464 | private int currentLineNumber = 0;
|
---|
| 465 | public int CurrentLineNumber {
|
---|
| 466 | get { return currentLineNumber; }
|
---|
| 467 | private set { currentLineNumber = value; }
|
---|
| 468 | }
|
---|
| 469 | private string currentLine;
|
---|
| 470 | public string CurrentLine {
|
---|
| 471 | get { return currentLine; }
|
---|
| 472 | private set { currentLine = value; }
|
---|
| 473 | }
|
---|
[13414] | 474 | public long BytesRead {
|
---|
| 475 | get;
|
---|
| 476 | private set;
|
---|
| 477 | }
|
---|
[7849] | 478 |
|
---|
| 479 | public Tokenizer(StreamReader reader, NumberFormatInfo numberFormatInfo, DateTimeFormatInfo dateTimeFormatInfo, char separator) {
|
---|
| 480 | this.reader = reader;
|
---|
| 481 | this.numberFormatInfo = numberFormatInfo;
|
---|
| 482 | this.dateTimeFormatInfo = dateTimeFormatInfo;
|
---|
| 483 | this.separator = separator;
|
---|
[13447] | 484 | this.separators = new char[] { separator };
|
---|
[7849] | 485 | ReadNextTokens();
|
---|
| 486 | }
|
---|
| 487 |
|
---|
[13447] | 488 | public bool HasNext() {
|
---|
| 489 | return numTokens > tokenPos || !reader.EndOfStream;
|
---|
| 490 | }
|
---|
| 491 |
|
---|
| 492 | public TokenTypeEnum PeekType() {
|
---|
| 493 | return tokenTypes[tokenPos];
|
---|
| 494 | }
|
---|
| 495 |
|
---|
| 496 | public void Skip() {
|
---|
| 497 | // simply skips one token without returning the result values
|
---|
| 498 | tokenPos++;
|
---|
| 499 | if (numTokens == tokenPos) {
|
---|
| 500 | ReadNextTokens();
|
---|
| 501 | }
|
---|
| 502 | }
|
---|
| 503 |
|
---|
| 504 | public void Next(out TokenTypeEnum type, out string strVal, out double dblVal, out DateTime dateTimeVal) {
|
---|
| 505 | type = tokenTypes[tokenPos];
|
---|
| 506 | strVal = stringVals[tokenPos];
|
---|
| 507 | dblVal = doubleVals[tokenPos];
|
---|
| 508 | dateTimeVal = dateTimeVals[tokenPos];
|
---|
| 509 | Skip();
|
---|
| 510 | }
|
---|
| 511 |
|
---|
[7849] | 512 | private void ReadNextTokens() {
|
---|
| 513 | if (!reader.EndOfStream) {
|
---|
| 514 | CurrentLine = reader.ReadLine();
|
---|
[13447] | 515 | CurrentLineNumber++;
|
---|
[13414] | 516 | try {
|
---|
| 517 | BytesRead = reader.BaseStream.Position;
|
---|
[13584] | 518 | }
|
---|
| 519 | catch (IOException) {
|
---|
[13414] | 520 | BytesRead += CurrentLine.Length + 2; // guess
|
---|
[13584] | 521 | }
|
---|
| 522 | catch (NotSupportedException) {
|
---|
[13414] | 523 | BytesRead += CurrentLine.Length + 2;
|
---|
| 524 | }
|
---|
[13411] | 525 | int i = 0;
|
---|
[13447] | 526 | if (!string.IsNullOrWhiteSpace(CurrentLine)) {
|
---|
| 527 | foreach (var tok in Split(CurrentLine)) {
|
---|
| 528 | TokenTypeEnum type;
|
---|
[13411] | 529 | double doubleVal;
|
---|
| 530 | DateTime dateTimeValue;
|
---|
[13447] | 531 | type = TokenTypeEnum.String; // default
|
---|
| 532 | stringVals[i] = tok.Trim();
|
---|
| 533 | if (double.TryParse(tok, NumberStyles.Float, numberFormatInfo, out doubleVal)) {
|
---|
[13411] | 534 | type = TokenTypeEnum.Double;
|
---|
| 535 | doubleVals[i] = doubleVal;
|
---|
[13447] | 536 | } else if (DateTime.TryParse(tok, dateTimeFormatInfo, DateTimeStyles.None, out dateTimeValue)) {
|
---|
[13411] | 537 | type = TokenTypeEnum.DateTime;
|
---|
| 538 | dateTimeVals[i] = dateTimeValue;
|
---|
[13526] | 539 | } else if (string.IsNullOrWhiteSpace(tok)) {
|
---|
| 540 | type = TokenTypeEnum.Missing;
|
---|
[13411] | 541 | }
|
---|
[7849] | 542 |
|
---|
[13447] | 543 | // couldn't parse the token as an int or float number or datetime value so return a string token
|
---|
[13411] | 544 |
|
---|
| 545 | tokenTypes[i] = type;
|
---|
| 546 | i++;
|
---|
| 547 |
|
---|
| 548 | if (i >= tokenTypes.Length) {
|
---|
| 549 | // increase buffer size if necessary
|
---|
| 550 | IncreaseCapacity(ref tokenTypes);
|
---|
| 551 | IncreaseCapacity(ref doubleVals);
|
---|
| 552 | IncreaseCapacity(ref stringVals);
|
---|
| 553 | IncreaseCapacity(ref dateTimeVals);
|
---|
| 554 | }
|
---|
| 555 | }
|
---|
| 556 | }
|
---|
| 557 | tokenTypes[i] = TokenTypeEnum.NewLine;
|
---|
| 558 | numTokens = i + 1;
|
---|
| 559 | tokenPos = 0;
|
---|
[7849] | 560 | }
|
---|
| 561 | }
|
---|
| 562 |
|
---|
[13447] | 563 | private IEnumerable<string> Split(string line) {
|
---|
| 564 | return separator == WHITESPACECHAR ?
|
---|
| 565 | line.Split(whiteSpaceSeparators, StringSplitOptions.RemoveEmptyEntries) :
|
---|
| 566 | line.Split(separators);
|
---|
| 567 | }
|
---|
| 568 |
|
---|
[13411] | 569 | private static void IncreaseCapacity<T>(ref T[] arr) {
|
---|
| 570 | int n = (int)Math.Floor(arr.Length * 1.7); // guess
|
---|
| 571 | T[] arr2 = new T[n];
|
---|
| 572 | Array.Copy(arr, arr2, arr.Length);
|
---|
| 573 | arr = arr2;
|
---|
| 574 | }
|
---|
[7849] | 575 | }
|
---|
| 576 | #endregion
|
---|
| 577 |
|
---|
| 578 | #region parsing
|
---|
| 579 |
|
---|
| 580 | private void ParseVariableNames() {
|
---|
| 581 | // the first line must contain variable names
|
---|
[13411] | 582 | List<string> varNames = new List<string>();
|
---|
| 583 |
|
---|
| 584 | TokenTypeEnum type;
|
---|
| 585 | string strVal;
|
---|
| 586 | double dblVal;
|
---|
| 587 | DateTime dateTimeVal;
|
---|
| 588 |
|
---|
| 589 | tokenizer.Next(out type, out strVal, out dblVal, out dateTimeVal);
|
---|
| 590 |
|
---|
| 591 | // the first token must be a variable name
|
---|
| 592 | if (type != TokenTypeEnum.String)
|
---|
| 593 | throw new ArgumentException("Error: Expected " + TokenTypeEnum.String + " got " + type);
|
---|
| 594 | varNames.Add(strVal);
|
---|
| 595 |
|
---|
[13447] | 596 | while (tokenizer.HasNext() && tokenizer.PeekType() != TokenTypeEnum.NewLine) {
|
---|
[13411] | 597 | tokenizer.Next(out type, out strVal, out dblVal, out dateTimeVal);
|
---|
| 598 | varNames.Add(strVal);
|
---|
[7849] | 599 | }
|
---|
[13411] | 600 | ExpectType(TokenTypeEnum.NewLine);
|
---|
| 601 |
|
---|
| 602 | variableNames = varNames;
|
---|
[7849] | 603 | }
|
---|
| 604 |
|
---|
[13411] | 605 | private void ExpectType(TokenTypeEnum expectedToken) {
|
---|
| 606 | if (tokenizer.PeekType() != expectedToken)
|
---|
| 607 | throw new ArgumentException("Error: Expected " + expectedToken + " got " + tokenizer.PeekType());
|
---|
| 608 | tokenizer.Skip();
|
---|
[7849] | 609 | }
|
---|
| 610 |
|
---|
| 611 | private void Error(string message, string token, int lineNumber) {
|
---|
| 612 | throw new DataFormatException("Error while parsing.\n" + message, token, lineNumber);
|
---|
| 613 | }
|
---|
| 614 | #endregion
|
---|
| 615 |
|
---|
| 616 | [Serializable]
|
---|
[9449] | 617 | public class DataFormatException : Exception {
|
---|
[7849] | 618 | private int line;
|
---|
| 619 | public int Line {
|
---|
| 620 | get { return line; }
|
---|
| 621 | }
|
---|
| 622 | private string token;
|
---|
| 623 | public string Token {
|
---|
| 624 | get { return token; }
|
---|
| 625 | }
|
---|
| 626 | public DataFormatException(string message, string token, int line)
|
---|
| 627 | : base(message + "\nToken: " + token + " (line: " + line + ")") {
|
---|
| 628 | this.token = token;
|
---|
| 629 | this.line = line;
|
---|
| 630 | }
|
---|
| 631 |
|
---|
| 632 | public DataFormatException(SerializationInfo info, StreamingContext context) : base(info, context) { }
|
---|
| 633 | }
|
---|
| 634 | }
|
---|
| 635 | }
|
---|