[6589] | 1 | #region License Information
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| 2 | /* HeuristicLab
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[7259] | 3 | * Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
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[6589] | 4 | *
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| 5 | * This file is part of HeuristicLab.
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| 6 | *
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| 7 | * HeuristicLab is free software: you can redistribute it and/or modify
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| 8 | * it under the terms of the GNU General Public License as published by
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| 9 | * the Free Software Foundation, either version 3 of the License, or
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| 10 | * (at your option) any later version.
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| 11 | *
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| 12 | * HeuristicLab is distributed in the hope that it will be useful,
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| 13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 15 | * GNU General Public License for more details.
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| 16 | *
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| 17 | * You should have received a copy of the GNU General Public License
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| 18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
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| 19 | */
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| 20 | #endregion
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| 21 |
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| 22 | using System;
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| 23 | using System.Collections.Generic;
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| 24 | using System.Linq;
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| 25 | using HeuristicLab.Common;
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| 26 | using HeuristicLab.Core;
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| 27 | using HeuristicLab.Data;
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| 28 | using HeuristicLab.Optimization;
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| 29 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
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| 30 |
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| 31 | namespace HeuristicLab.Problems.DataAnalysis {
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| 32 | /// <summary>
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| 33 | /// Represents a classification solution that uses a discriminant function and classification thresholds.
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| 34 | /// </summary>
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| 35 | [StorableClass]
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| 36 | [Item("DiscriminantFunctionClassificationSolution", "Represents a classification solution that uses a discriminant function and classification thresholds.")]
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| 37 | public abstract class DiscriminantFunctionClassificationSolutionBase : ClassificationSolutionBase, IDiscriminantFunctionClassificationSolution {
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| 38 | private const string TrainingMeanSquaredErrorResultName = "Mean squared error (training)";
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| 39 | private const string TestMeanSquaredErrorResultName = "Mean squared error (test)";
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| 40 | private const string TrainingRSquaredResultName = "Pearson's R² (training)";
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| 41 | private const string TestRSquaredResultName = "Pearson's R² (test)";
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| 42 |
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| 43 | public new IDiscriminantFunctionClassificationModel Model {
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| 44 | get { return (IDiscriminantFunctionClassificationModel)base.Model; }
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| 45 | protected set {
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| 46 | if (value != null && value != Model) {
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| 47 | if (Model != null) {
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| 48 | Model.ThresholdsChanged -= new EventHandler(Model_ThresholdsChanged);
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| 49 | }
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| 50 | value.ThresholdsChanged += new EventHandler(Model_ThresholdsChanged);
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| 51 | base.Model = value;
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| 52 | }
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| 53 | }
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| 54 | }
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| 55 |
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| 56 | #region Results
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| 57 | public double TrainingMeanSquaredError {
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| 58 | get { return ((DoubleValue)this[TrainingMeanSquaredErrorResultName].Value).Value; }
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| 59 | private set { ((DoubleValue)this[TrainingMeanSquaredErrorResultName].Value).Value = value; }
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| 60 | }
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| 61 | public double TestMeanSquaredError {
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| 62 | get { return ((DoubleValue)this[TestMeanSquaredErrorResultName].Value).Value; }
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| 63 | private set { ((DoubleValue)this[TestMeanSquaredErrorResultName].Value).Value = value; }
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| 64 | }
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| 65 | public double TrainingRSquared {
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| 66 | get { return ((DoubleValue)this[TrainingRSquaredResultName].Value).Value; }
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| 67 | private set { ((DoubleValue)this[TrainingRSquaredResultName].Value).Value = value; }
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| 68 | }
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| 69 | public double TestRSquared {
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| 70 | get { return ((DoubleValue)this[TestRSquaredResultName].Value).Value; }
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| 71 | private set { ((DoubleValue)this[TestRSquaredResultName].Value).Value = value; }
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| 72 | }
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| 73 | #endregion
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| 74 |
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| 75 | [StorableConstructor]
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| 76 | protected DiscriminantFunctionClassificationSolutionBase(bool deserializing) : base(deserializing) { }
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| 77 | protected DiscriminantFunctionClassificationSolutionBase(DiscriminantFunctionClassificationSolutionBase original, Cloner cloner)
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| 78 | : base(original, cloner) {
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| 79 | RegisterEventHandler();
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| 80 | }
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| 81 | protected DiscriminantFunctionClassificationSolutionBase(IDiscriminantFunctionClassificationModel model, IClassificationProblemData problemData)
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| 82 | : base(model, problemData) {
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| 83 | Add(new Result(TrainingMeanSquaredErrorResultName, "Mean of squared errors of the model on the training partition", new DoubleValue()));
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| 84 | Add(new Result(TestMeanSquaredErrorResultName, "Mean of squared errors of the model on the test partition", new DoubleValue()));
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| 85 | Add(new Result(TrainingRSquaredResultName, "Squared Pearson's correlation coefficient of the model output and the actual values on the training partition", new DoubleValue()));
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| 86 | Add(new Result(TestRSquaredResultName, "Squared Pearson's correlation coefficient of the model output and the actual values on the test partition", new DoubleValue()));
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| 87 |
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| 88 | RegisterEventHandler();
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| 89 | }
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| 90 |
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| 91 | [StorableHook(HookType.AfterDeserialization)]
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| 92 | private void AfterDeserialization() {
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| 93 | RegisterEventHandler();
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| 94 | }
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| 95 |
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[6606] | 96 | protected override void OnModelChanged() {
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[6589] | 97 | DeregisterEventHandler();
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| 98 | SetAccuracyMaximizingThresholds();
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| 99 | RegisterEventHandler();
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[6606] | 100 | base.OnModelChanged();
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[6589] | 101 | }
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| 102 |
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| 103 | protected void CalculateRegressionResults() {
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| 104 | double[] estimatedTrainingValues = EstimatedTrainingValues.ToArray(); // cache values
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[6740] | 105 | double[] originalTrainingValues = ProblemData.Dataset.GetDoubleValues(ProblemData.TargetVariable, ProblemData.TrainingIndizes).ToArray();
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[6589] | 106 | double[] estimatedTestValues = EstimatedTestValues.ToArray(); // cache values
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[6740] | 107 | double[] originalTestValues = ProblemData.Dataset.GetDoubleValues(ProblemData.TargetVariable, ProblemData.TestIndizes).ToArray();
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[6589] | 108 |
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| 109 | OnlineCalculatorError errorState;
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[6961] | 110 | double trainingMSE = OnlineMeanSquaredErrorCalculator.Calculate(originalTrainingValues, estimatedTrainingValues, out errorState);
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[6589] | 111 | TrainingMeanSquaredError = errorState == OnlineCalculatorError.None ? trainingMSE : double.NaN;
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[6961] | 112 | double testMSE = OnlineMeanSquaredErrorCalculator.Calculate(originalTestValues, estimatedTestValues, out errorState);
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[6589] | 113 | TestMeanSquaredError = errorState == OnlineCalculatorError.None ? testMSE : double.NaN;
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| 114 |
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[6961] | 115 | double trainingR2 = OnlinePearsonsRSquaredCalculator.Calculate(originalTrainingValues, estimatedTrainingValues, out errorState);
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[6589] | 116 | TrainingRSquared = errorState == OnlineCalculatorError.None ? trainingR2 : double.NaN;
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[6961] | 117 | double testR2 = OnlinePearsonsRSquaredCalculator.Calculate(originalTestValues, estimatedTestValues, out errorState);
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[6589] | 118 | TestRSquared = errorState == OnlineCalculatorError.None ? testR2 : double.NaN;
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[6913] | 119 |
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| 120 | double trainingNormalizedGini = NormalizedGiniCalculator.Calculate(originalTrainingValues, estimatedTrainingValues, out errorState);
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| 121 | if (errorState != OnlineCalculatorError.None) trainingNormalizedGini = double.NaN;
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| 122 | double testNormalizedGini = NormalizedGiniCalculator.Calculate(originalTestValues, estimatedTestValues, out errorState);
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| 123 | if (errorState != OnlineCalculatorError.None) testNormalizedGini = double.NaN;
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| 124 |
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| 125 | TrainingNormalizedGiniCoefficient = trainingNormalizedGini;
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| 126 | TestNormalizedGiniCoefficient = testNormalizedGini;
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[6589] | 127 | }
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| 128 |
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| 129 | private void RegisterEventHandler() {
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| 130 | Model.ThresholdsChanged += new EventHandler(Model_ThresholdsChanged);
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| 131 | }
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| 132 | private void DeregisterEventHandler() {
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| 133 | Model.ThresholdsChanged -= new EventHandler(Model_ThresholdsChanged);
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| 134 | }
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| 135 | private void Model_ThresholdsChanged(object sender, EventArgs e) {
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| 136 | OnModelThresholdsChanged(e);
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| 137 | }
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| 138 |
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| 139 | public void SetAccuracyMaximizingThresholds() {
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| 140 | double[] classValues;
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| 141 | double[] thresholds;
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[6740] | 142 | var targetClassValues = ProblemData.Dataset.GetDoubleValues(ProblemData.TargetVariable, ProblemData.TrainingIndizes);
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[6589] | 143 | AccuracyMaximizationThresholdCalculator.CalculateThresholds(ProblemData, EstimatedTrainingValues, targetClassValues, out classValues, out thresholds);
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| 144 |
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| 145 | Model.SetThresholdsAndClassValues(thresholds, classValues);
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| 146 | }
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| 147 |
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| 148 | public void SetClassDistibutionCutPointThresholds() {
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| 149 | double[] classValues;
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| 150 | double[] thresholds;
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[6740] | 151 | var targetClassValues = ProblemData.Dataset.GetDoubleValues(ProblemData.TargetVariable, ProblemData.TrainingIndizes);
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[6589] | 152 | NormalDistributionCutPointsThresholdCalculator.CalculateThresholds(ProblemData, EstimatedTrainingValues, targetClassValues, out classValues, out thresholds);
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| 153 |
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| 154 | Model.SetThresholdsAndClassValues(thresholds, classValues);
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| 155 | }
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| 156 |
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| 157 | protected virtual void OnModelThresholdsChanged(EventArgs e) {
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[6606] | 158 | CalculateResults();
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[7234] | 159 | CalculateRegressionResults();
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[6589] | 160 | }
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| 161 |
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| 162 | public abstract IEnumerable<double> EstimatedValues { get; }
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| 163 | public abstract IEnumerable<double> EstimatedTrainingValues { get; }
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| 164 | public abstract IEnumerable<double> EstimatedTestValues { get; }
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| 165 |
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| 166 | public abstract IEnumerable<double> GetEstimatedValues(IEnumerable<int> rows);
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| 167 | }
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| 168 | }
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