1 | #region License Information
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2 | /* HeuristicLab
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3 | * Copyright (C) 2002-2011 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
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4 | *
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5 | * This file is part of HeuristicLab.
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6 | *
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7 | * HeuristicLab is free software: you can redistribute it and/or modify
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8 | * it under the terms of the GNU General Public License as published by
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9 | * the Free Software Foundation, either version 3 of the License, or
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10 | * (at your option) any later version.
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11 | *
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12 | * HeuristicLab is distributed in the hope that it will be useful,
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13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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15 | * GNU General Public License for more details.
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16 | *
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17 | * You should have received a copy of the GNU General Public License
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18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
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19 | */
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20 | #endregion
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21 |
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22 | using System;
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23 | using System.Collections.Generic;
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24 | using System.Linq;
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25 | using HeuristicLab.Common;
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26 | using HeuristicLab.Core;
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27 | using HeuristicLab.Data;
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28 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
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29 |
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30 | namespace HeuristicLab.Problems.DataAnalysis {
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31 | /// <summary>
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32 | /// Represents classification solutions that contain an ensemble of multiple classification models
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33 | /// </summary>
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34 | [StorableClass]
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35 | [Item("Classification Ensemble Solution", "A classification solution that contains an ensemble of multiple classification models")]
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36 | // [Creatable("Data Analysis")]
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37 | public sealed class ClassificationEnsembleSolution : ClassificationSolution, IClassificationEnsembleSolution {
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38 |
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39 | public new IClassificationEnsembleModel Model {
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40 | set { base.Model = value; }
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41 | get { return (IClassificationEnsembleModel)base.Model; }
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42 | }
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43 |
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44 | [Storable]
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45 | private Dictionary<IClassificationModel, IntRange> trainingPartitions;
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46 | [Storable]
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47 | private Dictionary<IClassificationModel, IntRange> testPartitions;
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48 |
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49 |
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50 | [StorableConstructor]
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51 | private ClassificationEnsembleSolution(bool deserializing) : base(deserializing) { }
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52 | private ClassificationEnsembleSolution(ClassificationEnsembleSolution original, Cloner cloner)
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53 | : base(original, cloner) {
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54 | trainingPartitions = new Dictionary<IClassificationModel, IntRange>();
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55 | testPartitions = new Dictionary<IClassificationModel, IntRange>();
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56 | foreach (var pair in original.trainingPartitions) {
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57 | trainingPartitions[cloner.Clone(pair.Key)] = cloner.Clone(pair.Value);
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58 | }
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59 | foreach (var pair in original.testPartitions) {
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60 | testPartitions[cloner.Clone(pair.Key)] = cloner.Clone(pair.Value);
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61 | }
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62 | RecalculateResults();
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63 | }
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64 | public ClassificationEnsembleSolution(IEnumerable<IClassificationModel> models, IClassificationProblemData problemData)
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65 | : base(new ClassificationEnsembleModel(models), new ClassificationEnsembleProblemData(problemData)) {
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66 | this.name = ItemName;
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67 | this.description = ItemDescription;
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68 | trainingPartitions = new Dictionary<IClassificationModel, IntRange>();
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69 | testPartitions = new Dictionary<IClassificationModel, IntRange>();
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70 | foreach (var model in models) {
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71 | trainingPartitions[model] = (IntRange)problemData.TrainingPartition.Clone();
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72 | testPartitions[model] = (IntRange)problemData.TestPartition.Clone();
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73 | }
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74 | RecalculateResults();
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75 | }
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76 |
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77 | public ClassificationEnsembleSolution(IEnumerable<IClassificationModel> models, IClassificationProblemData problemData, IEnumerable<IntRange> trainingPartitions, IEnumerable<IntRange> testPartitions)
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78 | : base(new ClassificationEnsembleModel(models), new ClassificationEnsembleProblemData(problemData)) {
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79 | this.trainingPartitions = new Dictionary<IClassificationModel, IntRange>();
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80 | this.testPartitions = new Dictionary<IClassificationModel, IntRange>();
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81 | AddModelsAndPartitions(models,
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82 | trainingPartitions,
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83 | testPartitions);
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84 | RecalculateResults();
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85 | }
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86 |
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87 | public override IDeepCloneable Clone(Cloner cloner) {
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88 | return new ClassificationEnsembleSolution(this, cloner);
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89 | }
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90 |
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91 | protected override void RecalculateResults() {
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92 | CalculateResults();
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93 | }
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94 |
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95 | public override IEnumerable<double> EstimatedTrainingClassValues {
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96 | get {
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97 | var rows = ProblemData.TrainingIndizes;
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98 | var estimatedValuesEnumerators = (from model in Model.Models
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99 | select new { Model = model, EstimatedValuesEnumerator = model.GetEstimatedClassValues(ProblemData.Dataset, rows).GetEnumerator() })
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100 | .ToList();
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101 | var rowsEnumerator = rows.GetEnumerator();
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102 | // aggregate to make sure that MoveNext is called for all enumerators
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103 | while (rowsEnumerator.MoveNext() & estimatedValuesEnumerators.Select(en => en.EstimatedValuesEnumerator.MoveNext()).Aggregate(true, (acc, b) => acc & b)) {
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104 | int currentRow = rowsEnumerator.Current;
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105 |
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106 | var selectedEnumerators = from pair in estimatedValuesEnumerators
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107 | where RowIsTrainingForModel(currentRow, pair.Model) && !RowIsTestForModel(currentRow, pair.Model)
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108 | select pair.EstimatedValuesEnumerator;
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109 | yield return AggregateEstimatedClassValues(selectedEnumerators.Select(x => x.Current));
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110 | }
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111 | }
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112 | }
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113 |
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114 | public override IEnumerable<double> EstimatedTestClassValues {
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115 | get {
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116 | var rows = ProblemData.TestIndizes;
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117 | var estimatedValuesEnumerators = (from model in Model.Models
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118 | select new { Model = model, EstimatedValuesEnumerator = model.GetEstimatedClassValues(ProblemData.Dataset, rows).GetEnumerator() })
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119 | .ToList();
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120 | var rowsEnumerator = ProblemData.TestIndizes.GetEnumerator();
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121 | // aggregate to make sure that MoveNext is called for all enumerators
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122 | while (rowsEnumerator.MoveNext() & estimatedValuesEnumerators.Select(en => en.EstimatedValuesEnumerator.MoveNext()).Aggregate(true, (acc, b) => acc & b)) {
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123 | int currentRow = rowsEnumerator.Current;
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124 |
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125 | var selectedEnumerators = from pair in estimatedValuesEnumerators
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126 | where RowIsTestForModel(currentRow, pair.Model)
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127 | select pair.EstimatedValuesEnumerator;
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128 |
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129 | yield return AggregateEstimatedClassValues(selectedEnumerators.Select(x => x.Current));
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130 | }
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131 | }
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132 | }
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133 |
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134 | private bool RowIsTrainingForModel(int currentRow, IClassificationModel model) {
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135 | return trainingPartitions == null || !trainingPartitions.ContainsKey(model) ||
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136 | (trainingPartitions[model].Start <= currentRow && currentRow < trainingPartitions[model].End);
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137 | }
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138 |
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139 | private bool RowIsTestForModel(int currentRow, IClassificationModel model) {
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140 | return testPartitions == null || !testPartitions.ContainsKey(model) ||
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141 | (testPartitions[model].Start <= currentRow && currentRow < testPartitions[model].End);
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142 | }
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143 |
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144 | public override IEnumerable<double> GetEstimatedClassValues(IEnumerable<int> rows) {
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145 | return from xs in GetEstimatedClassValueVectors(ProblemData.Dataset, rows)
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146 | select AggregateEstimatedClassValues(xs);
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147 | }
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148 |
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149 | public IEnumerable<IEnumerable<double>> GetEstimatedClassValueVectors(Dataset dataset, IEnumerable<int> rows) {
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150 | var estimatedValuesEnumerators = (from model in Model.Models
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151 | select model.GetEstimatedClassValues(dataset, rows).GetEnumerator())
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152 | .ToList();
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153 |
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154 | while (estimatedValuesEnumerators.All(en => en.MoveNext())) {
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155 | yield return from enumerator in estimatedValuesEnumerators
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156 | select enumerator.Current;
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157 | }
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158 | }
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159 |
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160 | private double AggregateEstimatedClassValues(IEnumerable<double> estimatedClassValues) {
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161 | return estimatedClassValues
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162 | .GroupBy(x => x)
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163 | .OrderBy(g => -g.Count())
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164 | .Select(g => g.Key)
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165 | .DefaultIfEmpty(double.NaN)
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166 | .First();
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167 | }
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168 |
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169 | public void AddModelsAndPartitions(IEnumerable<IClassificationSolution> solutions) {
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170 | foreach (var solution in solutions) {
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171 | var ensembleSolution = solution as ClassificationEnsembleSolution;
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172 | if (ensembleSolution != null) {
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173 | var data = from m in ensembleSolution.Model.Models
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174 | let train = ensembleSolution.trainingPartitions[m]
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175 | let test = ensembleSolution.testPartitions[m]
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176 | select new { m, train, test };
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177 |
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178 | foreach (var d in data) {
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179 | Model.Add(d.m);
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180 | trainingPartitions[d.m] = (IntRange)d.train.Clone();
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181 | testPartitions[d.m] = (IntRange)d.test.Clone();
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182 | }
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183 | } else {
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184 | Model.Add(solution.Model);
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185 | trainingPartitions[solution.Model] = (IntRange)solution.ProblemData.TrainingPartition.Clone();
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186 | testPartitions[solution.Model] = (IntRange)solution.ProblemData.TestPartition.Clone();
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187 | }
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188 | }
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189 |
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190 | RecalculateResults();
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191 | }
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192 |
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193 | private void AddModelsAndPartitions(IEnumerable<IClassificationModel> models, IEnumerable<IntRange> trainingPartitions, IEnumerable<IntRange> testPartitions) {
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194 | var modelEnumerator = models.GetEnumerator();
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195 | var trainingPartitionEnumerator = trainingPartitions.GetEnumerator();
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196 | var testPartitionEnumerator = testPartitions.GetEnumerator();
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197 |
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198 | while (modelEnumerator.MoveNext() & trainingPartitionEnumerator.MoveNext() & testPartitionEnumerator.MoveNext()) {
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199 | this.trainingPartitions[modelEnumerator.Current] = (IntRange)trainingPartitionEnumerator.Current.Clone();
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200 | this.testPartitions[modelEnumerator.Current] = (IntRange)testPartitionEnumerator.Current.Clone();
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201 | }
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202 | if (modelEnumerator.MoveNext() | trainingPartitionEnumerator.MoveNext() | testPartitionEnumerator.MoveNext()) {
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203 | throw new ArgumentException();
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204 | }
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205 | }
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206 | }
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207 | }
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