1 | #region License Information
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2 | /* HeuristicLab
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3 | * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
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4 | *
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5 | * This file is part of HeuristicLab.
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6 | *
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7 | * HeuristicLab is free software: you can redistribute it and/or modify
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8 | * it under the terms of the GNU General Public License as published by
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9 | * the Free Software Foundation, either version 3 of the License, or
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10 | * (at your option) any later version.
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11 | *
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12 | * HeuristicLab is distributed in the hope that it will be useful,
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13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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15 | * GNU General Public License for more details.
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16 | *
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17 | * You should have received a copy of the GNU General Public License
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18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
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19 | */
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20 | #endregion
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21 |
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22 | using System;
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23 | using System.Collections.Generic;
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24 | using System.Linq;
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25 | using HeuristicLab.Common;
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26 | using HeuristicLab.Core;
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27 | using HeuristicLab.Data;
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28 | using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
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29 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
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30 |
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31 | namespace HeuristicLab.Problems.DataAnalysis.Symbolic.Regression {
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32 | [Item("Pearson R² & Nested Tree size Evaluator", "Calculates the Pearson R² and the nested tree size of a symbolic regression solution.")]
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33 | [StorableClass]
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34 | public class PearsonRSquaredNestedTreeSizeEvaluator : SymbolicRegressionMultiObjectiveEvaluator {
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35 | [StorableConstructor]
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36 | protected PearsonRSquaredNestedTreeSizeEvaluator(bool deserializing) : base(deserializing) { }
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37 | protected PearsonRSquaredNestedTreeSizeEvaluator(PearsonRSquaredNestedTreeSizeEvaluator original, Cloner cloner)
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38 | : base(original, cloner) {
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39 | }
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40 | public override IDeepCloneable Clone(Cloner cloner) {
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41 | return new PearsonRSquaredNestedTreeSizeEvaluator(this, cloner);
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42 | }
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43 |
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44 | public PearsonRSquaredNestedTreeSizeEvaluator() : base() { }
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45 |
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46 | public override IEnumerable<bool> Maximization { get { return new bool[2] { true, false }; } }
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47 |
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48 | public override IOperation InstrumentedApply() {
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49 | IEnumerable<int> rows = GenerateRowsToEvaluate();
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50 | var solution = SymbolicExpressionTreeParameter.ActualValue;
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51 | var problemData = ProblemDataParameter.ActualValue;
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52 | var interpreter = SymbolicDataAnalysisTreeInterpreterParameter.ActualValue;
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53 | var estimationLimits = EstimationLimitsParameter.ActualValue;
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54 | var applyLinearScaling = ApplyLinearScalingParameter.ActualValue.Value;
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55 |
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56 | if (UseConstantOptimization) {
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57 | SymbolicRegressionConstantOptimizationEvaluator.OptimizeConstants(interpreter, solution, problemData, rows, applyLinearScaling, ConstantOptimizationIterations, estimationLimits.Upper, estimationLimits.Lower);
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58 | }
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59 |
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60 | double[] qualities = Calculate(SymbolicDataAnalysisTreeInterpreterParameter.ActualValue, solution, EstimationLimitsParameter.ActualValue.Lower, EstimationLimitsParameter.ActualValue.Upper, ProblemDataParameter.ActualValue, rows, ApplyLinearScalingParameter.ActualValue.Value, DecimalPlaces);
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61 | QualitiesParameter.ActualValue = new DoubleArray(qualities);
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62 | return base.InstrumentedApply();
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63 | }
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64 |
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65 | public static double[] Calculate(ISymbolicDataAnalysisExpressionTreeInterpreter interpreter, ISymbolicExpressionTree solution, double lowerEstimationLimit, double upperEstimationLimit, IRegressionProblemData problemData, IEnumerable<int> rows, bool applyLinearScaling, int decimalPlaces) {
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66 | double r2 = SymbolicRegressionSingleObjectivePearsonRSquaredEvaluator.Calculate(interpreter, solution, lowerEstimationLimit, upperEstimationLimit, problemData, rows, applyLinearScaling);
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67 | if (decimalPlaces >= 0)
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68 | r2 = Math.Round(r2, decimalPlaces);
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69 | return new double[2] { r2, solution.IterateNodesPostfix().Sum(n => n.GetLength()) };
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70 | }
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71 |
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72 | public override double[] Evaluate(IExecutionContext context, ISymbolicExpressionTree tree, IRegressionProblemData problemData, IEnumerable<int> rows) {
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73 | SymbolicDataAnalysisTreeInterpreterParameter.ExecutionContext = context;
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74 | EstimationLimitsParameter.ExecutionContext = context;
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75 | ApplyLinearScalingParameter.ExecutionContext = context;
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76 |
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77 | double[] quality = Calculate(SymbolicDataAnalysisTreeInterpreterParameter.ActualValue, tree, EstimationLimitsParameter.ActualValue.Lower, EstimationLimitsParameter.ActualValue.Upper, problemData, rows, ApplyLinearScalingParameter.ActualValue.Value, DecimalPlaces);
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78 |
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79 | SymbolicDataAnalysisTreeInterpreterParameter.ExecutionContext = null;
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80 | EstimationLimitsParameter.ExecutionContext = null;
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81 | ApplyLinearScalingParameter.ExecutionContext = null;
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82 |
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83 | return quality;
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84 | }
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85 | }
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86 | }
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