[9268] | 1 | /*************************************************************************
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| 2 | Copyright (c) Sergey Bochkanov (ALGLIB project).
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| 3 |
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| 4 | >>> SOURCE LICENSE >>>
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| 5 | This program is free software; you can redistribute it and/or modify
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| 6 | it under the terms of the GNU General Public License as published by
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| 7 | the Free Software Foundation (www.fsf.org); either version 2 of the
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| 8 | License, or (at your option) any later version.
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| 9 |
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| 10 | This program is distributed in the hope that it will be useful,
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| 11 | but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 12 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 13 | GNU General Public License for more details.
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| 14 |
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| 15 | A copy of the GNU General Public License is available at
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| 16 | http://www.fsf.org/licensing/licenses
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| 17 | >>> END OF LICENSE >>>
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| 18 | *************************************************************************/
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| 19 | #pragma warning disable 162
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| 20 | #pragma warning disable 219
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| 21 | using System;
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| 22 |
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| 23 | public partial class alglib
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| 24 | {
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| 25 |
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| 26 |
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| 27 | /*************************************************************************
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| 28 | Portable high quality random number generator state.
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| 29 | Initialized with HQRNDRandomize() or HQRNDSeed().
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| 30 |
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| 31 | Fields:
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| 32 | S1, S2 - seed values
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| 33 | V - precomputed value
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| 34 | MagicV - 'magic' value used to determine whether State structure
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| 35 | was correctly initialized.
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| 36 | *************************************************************************/
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| 37 | public class hqrndstate
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| 38 | {
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| 39 | //
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| 40 | // Public declarations
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| 41 | //
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| 42 |
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| 43 | public hqrndstate()
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| 44 | {
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| 45 | _innerobj = new hqrnd.hqrndstate();
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| 46 | }
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| 47 |
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| 48 | //
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| 49 | // Although some of declarations below are public, you should not use them
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| 50 | // They are intended for internal use only
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| 51 | //
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| 52 | private hqrnd.hqrndstate _innerobj;
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| 53 | public hqrnd.hqrndstate innerobj { get { return _innerobj; } }
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| 54 | public hqrndstate(hqrnd.hqrndstate obj)
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| 55 | {
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| 56 | _innerobj = obj;
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| 57 | }
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| 58 | }
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| 59 |
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| 60 | /*************************************************************************
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| 61 | HQRNDState initialization with random values which come from standard
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| 62 | RNG.
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| 63 |
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| 64 | -- ALGLIB --
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| 65 | Copyright 02.12.2009 by Bochkanov Sergey
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| 66 | *************************************************************************/
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| 67 | public static void hqrndrandomize(out hqrndstate state)
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| 68 | {
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| 69 | state = new hqrndstate();
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| 70 | hqrnd.hqrndrandomize(state.innerobj);
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| 71 | return;
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| 72 | }
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| 73 |
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| 74 | /*************************************************************************
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| 75 | HQRNDState initialization with seed values
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| 76 |
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| 77 | -- ALGLIB --
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| 78 | Copyright 02.12.2009 by Bochkanov Sergey
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| 79 | *************************************************************************/
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| 80 | public static void hqrndseed(int s1, int s2, out hqrndstate state)
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| 81 | {
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| 82 | state = new hqrndstate();
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| 83 | hqrnd.hqrndseed(s1, s2, state.innerobj);
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| 84 | return;
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| 85 | }
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| 86 |
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| 87 | /*************************************************************************
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| 88 | This function generates random real number in (0,1),
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| 89 | not including interval boundaries
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| 90 |
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| 91 | State structure must be initialized with HQRNDRandomize() or HQRNDSeed().
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| 92 |
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| 93 | -- ALGLIB --
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| 94 | Copyright 02.12.2009 by Bochkanov Sergey
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| 95 | *************************************************************************/
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| 96 | public static double hqrnduniformr(hqrndstate state)
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| 97 | {
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| 98 |
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| 99 | double result = hqrnd.hqrnduniformr(state.innerobj);
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| 100 | return result;
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| 101 | }
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| 102 |
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| 103 | /*************************************************************************
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| 104 | This function generates random integer number in [0, N)
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| 105 |
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| 106 | 1. N must be less than HQRNDMax-1.
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| 107 | 2. State structure must be initialized with HQRNDRandomize() or HQRNDSeed()
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| 108 |
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| 109 | -- ALGLIB --
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| 110 | Copyright 02.12.2009 by Bochkanov Sergey
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| 111 | *************************************************************************/
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| 112 | public static int hqrnduniformi(hqrndstate state, int n)
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| 113 | {
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| 114 |
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| 115 | int result = hqrnd.hqrnduniformi(state.innerobj, n);
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| 116 | return result;
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| 117 | }
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| 118 |
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| 119 | /*************************************************************************
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| 120 | Random number generator: normal numbers
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| 121 |
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| 122 | This function generates one random number from normal distribution.
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| 123 | Its performance is equal to that of HQRNDNormal2()
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| 124 |
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| 125 | State structure must be initialized with HQRNDRandomize() or HQRNDSeed().
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| 126 |
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| 127 | -- ALGLIB --
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| 128 | Copyright 02.12.2009 by Bochkanov Sergey
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| 129 | *************************************************************************/
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| 130 | public static double hqrndnormal(hqrndstate state)
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| 131 | {
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| 132 |
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| 133 | double result = hqrnd.hqrndnormal(state.innerobj);
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| 134 | return result;
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| 135 | }
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| 136 |
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| 137 | /*************************************************************************
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| 138 | Random number generator: random X and Y such that X^2+Y^2=1
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| 139 |
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| 140 | State structure must be initialized with HQRNDRandomize() or HQRNDSeed().
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| 141 |
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| 142 | -- ALGLIB --
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| 143 | Copyright 02.12.2009 by Bochkanov Sergey
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| 144 | *************************************************************************/
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| 145 | public static void hqrndunit2(hqrndstate state, out double x, out double y)
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| 146 | {
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| 147 | x = 0;
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| 148 | y = 0;
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| 149 | hqrnd.hqrndunit2(state.innerobj, ref x, ref y);
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| 150 | return;
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| 151 | }
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| 152 |
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| 153 | /*************************************************************************
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| 154 | Random number generator: normal numbers
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| 155 |
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| 156 | This function generates two independent random numbers from normal
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| 157 | distribution. Its performance is equal to that of HQRNDNormal()
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| 158 |
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| 159 | State structure must be initialized with HQRNDRandomize() or HQRNDSeed().
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| 160 |
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| 161 | -- ALGLIB --
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| 162 | Copyright 02.12.2009 by Bochkanov Sergey
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| 163 | *************************************************************************/
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| 164 | public static void hqrndnormal2(hqrndstate state, out double x1, out double x2)
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| 165 | {
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| 166 | x1 = 0;
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| 167 | x2 = 0;
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| 168 | hqrnd.hqrndnormal2(state.innerobj, ref x1, ref x2);
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| 169 | return;
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| 170 | }
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| 171 |
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| 172 | /*************************************************************************
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| 173 | Random number generator: exponential distribution
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| 174 |
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| 175 | State structure must be initialized with HQRNDRandomize() or HQRNDSeed().
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| 176 |
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| 177 | -- ALGLIB --
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| 178 | Copyright 11.08.2007 by Bochkanov Sergey
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| 179 | *************************************************************************/
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| 180 | public static double hqrndexponential(hqrndstate state, double lambdav)
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| 181 | {
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| 182 |
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| 183 | double result = hqrnd.hqrndexponential(state.innerobj, lambdav);
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| 184 | return result;
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| 185 | }
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| 186 |
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| 187 | /*************************************************************************
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| 188 | This function generates random number from discrete distribution given by
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| 189 | finite sample X.
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| 190 |
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| 191 | INPUT PARAMETERS
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| 192 | State - high quality random number generator, must be
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| 193 | initialized with HQRNDRandomize() or HQRNDSeed().
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| 194 | X - finite sample
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| 195 | N - number of elements to use, N>=1
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| 196 |
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| 197 | RESULT
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| 198 | this function returns one of the X[i] for random i=0..N-1
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| 199 |
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| 200 | -- ALGLIB --
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| 201 | Copyright 08.11.2011 by Bochkanov Sergey
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| 202 | *************************************************************************/
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| 203 | public static double hqrnddiscrete(hqrndstate state, double[] x, int n)
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| 204 | {
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| 205 |
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| 206 | double result = hqrnd.hqrnddiscrete(state.innerobj, x, n);
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| 207 | return result;
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| 208 | }
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| 209 |
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| 210 | /*************************************************************************
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| 211 | This function generates random number from continuous distribution given
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| 212 | by finite sample X.
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| 213 |
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| 214 | INPUT PARAMETERS
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| 215 | State - high quality random number generator, must be
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| 216 | initialized with HQRNDRandomize() or HQRNDSeed().
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| 217 | X - finite sample, array[N] (can be larger, in this case only
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| 218 | leading N elements are used). THIS ARRAY MUST BE SORTED BY
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| 219 | ASCENDING.
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| 220 | N - number of elements to use, N>=1
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| 221 |
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| 222 | RESULT
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| 223 | this function returns random number from continuous distribution which
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| 224 | tries to approximate X as mush as possible. min(X)<=Result<=max(X).
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| 225 |
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| 226 | -- ALGLIB --
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| 227 | Copyright 08.11.2011 by Bochkanov Sergey
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| 228 | *************************************************************************/
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| 229 | public static double hqrndcontinuous(hqrndstate state, double[] x, int n)
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| 230 | {
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| 231 |
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| 232 | double result = hqrnd.hqrndcontinuous(state.innerobj, x, n);
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| 233 | return result;
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| 234 | }
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| 235 |
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| 236 | }
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| 237 | public partial class alglib
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| 238 | {
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| 239 |
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| 240 |
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| 241 | /*************************************************************************
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| 242 |
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| 243 | *************************************************************************/
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| 244 | public class kdtree
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| 245 | {
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| 246 | //
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| 247 | // Public declarations
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| 248 | //
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| 249 |
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| 250 | public kdtree()
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| 251 | {
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| 252 | _innerobj = new nearestneighbor.kdtree();
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| 253 | }
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| 254 |
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| 255 | //
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| 256 | // Although some of declarations below are public, you should not use them
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| 257 | // They are intended for internal use only
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| 258 | //
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| 259 | private nearestneighbor.kdtree _innerobj;
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| 260 | public nearestneighbor.kdtree innerobj { get { return _innerobj; } }
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| 261 | public kdtree(nearestneighbor.kdtree obj)
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| 262 | {
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| 263 | _innerobj = obj;
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| 264 | }
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| 265 | }
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| 266 |
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| 267 |
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| 268 | /*************************************************************************
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| 269 | This function serializes data structure to string.
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| 270 |
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| 271 | Important properties of s_out:
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| 272 | * it contains alphanumeric characters, dots, underscores, minus signs
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| 273 | * these symbols are grouped into words, which are separated by spaces
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| 274 | and Windows-style (CR+LF) newlines
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| 275 | * although serializer uses spaces and CR+LF as separators, you can
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| 276 | replace any separator character by arbitrary combination of spaces,
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| 277 | tabs, Windows or Unix newlines. It allows flexible reformatting of
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| 278 | the string in case you want to include it into text or XML file.
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| 279 | But you should not insert separators into the middle of the "words"
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| 280 | nor you should change case of letters.
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| 281 | * s_out can be freely moved between 32-bit and 64-bit systems, little
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| 282 | and big endian machines, and so on. You can serialize structure on
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| 283 | 32-bit machine and unserialize it on 64-bit one (or vice versa), or
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| 284 | serialize it on SPARC and unserialize on x86. You can also
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| 285 | serialize it in C# version of ALGLIB and unserialize in C++ one,
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| 286 | and vice versa.
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| 287 | *************************************************************************/
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| 288 | public static void kdtreeserialize(kdtree obj, out string s_out)
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| 289 | {
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| 290 | alglib.serializer s = new alglib.serializer();
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| 291 | s.alloc_start();
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| 292 | nearestneighbor.kdtreealloc(s, obj.innerobj);
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| 293 | s.sstart_str();
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| 294 | nearestneighbor.kdtreeserialize(s, obj.innerobj);
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| 295 | s.stop();
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| 296 | s_out = s.get_string();
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| 297 | }
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| 298 |
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| 299 |
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| 300 | /*************************************************************************
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| 301 | This function unserializes data structure from string.
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| 302 | *************************************************************************/
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| 303 | public static void kdtreeunserialize(string s_in, out kdtree obj)
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| 304 | {
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| 305 | alglib.serializer s = new alglib.serializer();
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| 306 | obj = new kdtree();
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| 307 | s.ustart_str(s_in);
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| 308 | nearestneighbor.kdtreeunserialize(s, obj.innerobj);
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| 309 | s.stop();
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| 310 | }
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| 311 |
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| 312 | /*************************************************************************
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| 313 | KD-tree creation
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| 314 |
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| 315 | This subroutine creates KD-tree from set of X-values and optional Y-values
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| 316 |
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| 317 | INPUT PARAMETERS
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| 318 | XY - dataset, array[0..N-1,0..NX+NY-1].
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| 319 | one row corresponds to one point.
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| 320 | first NX columns contain X-values, next NY (NY may be zero)
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| 321 | columns may contain associated Y-values
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| 322 | N - number of points, N>=0.
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| 323 | NX - space dimension, NX>=1.
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| 324 | NY - number of optional Y-values, NY>=0.
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| 325 | NormType- norm type:
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| 326 | * 0 denotes infinity-norm
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| 327 | * 1 denotes 1-norm
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| 328 | * 2 denotes 2-norm (Euclidean norm)
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| 329 |
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| 330 | OUTPUT PARAMETERS
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| 331 | KDT - KD-tree
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| 332 |
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| 333 |
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| 334 | NOTES
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| 335 |
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| 336 | 1. KD-tree creation have O(N*logN) complexity and O(N*(2*NX+NY)) memory
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| 337 | requirements.
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| 338 | 2. Although KD-trees may be used with any combination of N and NX, they
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| 339 | are more efficient than brute-force search only when N >> 4^NX. So they
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| 340 | are most useful in low-dimensional tasks (NX=2, NX=3). NX=1 is another
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| 341 | inefficient case, because simple binary search (without additional
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| 342 | structures) is much more efficient in such tasks than KD-trees.
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| 343 |
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| 344 | -- ALGLIB --
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| 345 | Copyright 28.02.2010 by Bochkanov Sergey
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| 346 | *************************************************************************/
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| 347 | public static void kdtreebuild(double[,] xy, int n, int nx, int ny, int normtype, out kdtree kdt)
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| 348 | {
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| 349 | kdt = new kdtree();
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| 350 | nearestneighbor.kdtreebuild(xy, n, nx, ny, normtype, kdt.innerobj);
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| 351 | return;
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| 352 | }
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| 353 | public static void kdtreebuild(double[,] xy, int nx, int ny, int normtype, out kdtree kdt)
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| 354 | {
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| 355 | int n;
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| 356 |
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| 357 | kdt = new kdtree();
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| 358 | n = ap.rows(xy);
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| 359 | nearestneighbor.kdtreebuild(xy, n, nx, ny, normtype, kdt.innerobj);
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| 360 |
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| 361 | return;
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| 362 | }
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| 363 |
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| 364 | /*************************************************************************
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| 365 | KD-tree creation
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| 366 |
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| 367 | This subroutine creates KD-tree from set of X-values, integer tags and
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| 368 | optional Y-values
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| 369 |
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| 370 | INPUT PARAMETERS
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| 371 | XY - dataset, array[0..N-1,0..NX+NY-1].
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| 372 | one row corresponds to one point.
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| 373 | first NX columns contain X-values, next NY (NY may be zero)
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| 374 | columns may contain associated Y-values
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| 375 | Tags - tags, array[0..N-1], contains integer tags associated
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| 376 | with points.
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| 377 | N - number of points, N>=0
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| 378 | NX - space dimension, NX>=1.
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| 379 | NY - number of optional Y-values, NY>=0.
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| 380 | NormType- norm type:
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| 381 | * 0 denotes infinity-norm
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| 382 | * 1 denotes 1-norm
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| 383 | * 2 denotes 2-norm (Euclidean norm)
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| 384 |
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| 385 | OUTPUT PARAMETERS
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| 386 | KDT - KD-tree
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| 387 |
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| 388 | NOTES
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| 389 |
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| 390 | 1. KD-tree creation have O(N*logN) complexity and O(N*(2*NX+NY)) memory
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| 391 | requirements.
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| 392 | 2. Although KD-trees may be used with any combination of N and NX, they
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| 393 | are more efficient than brute-force search only when N >> 4^NX. So they
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| 394 | are most useful in low-dimensional tasks (NX=2, NX=3). NX=1 is another
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| 395 | inefficient case, because simple binary search (without additional
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| 396 | structures) is much more efficient in such tasks than KD-trees.
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| 397 |
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| 398 | -- ALGLIB --
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| 399 | Copyright 28.02.2010 by Bochkanov Sergey
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| 400 | *************************************************************************/
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| 401 | public static void kdtreebuildtagged(double[,] xy, int[] tags, int n, int nx, int ny, int normtype, out kdtree kdt)
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| 402 | {
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| 403 | kdt = new kdtree();
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| 404 | nearestneighbor.kdtreebuildtagged(xy, tags, n, nx, ny, normtype, kdt.innerobj);
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| 405 | return;
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| 406 | }
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| 407 | public static void kdtreebuildtagged(double[,] xy, int[] tags, int nx, int ny, int normtype, out kdtree kdt)
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| 408 | {
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| 409 | int n;
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| 410 | if( (ap.rows(xy)!=ap.len(tags)))
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| 411 | throw new alglibexception("Error while calling 'kdtreebuildtagged': looks like one of arguments has wrong size");
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| 412 | kdt = new kdtree();
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| 413 | n = ap.rows(xy);
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| 414 | nearestneighbor.kdtreebuildtagged(xy, tags, n, nx, ny, normtype, kdt.innerobj);
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| 415 |
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| 416 | return;
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| 417 | }
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| 418 |
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| 419 | /*************************************************************************
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| 420 | K-NN query: K nearest neighbors
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| 421 |
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| 422 | INPUT PARAMETERS
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| 423 | KDT - KD-tree
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| 424 | X - point, array[0..NX-1].
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| 425 | K - number of neighbors to return, K>=1
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| 426 | SelfMatch - whether self-matches are allowed:
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| 427 | * if True, nearest neighbor may be the point itself
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| 428 | (if it exists in original dataset)
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| 429 | * if False, then only points with non-zero distance
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| 430 | are returned
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| 431 | * if not given, considered True
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| 432 |
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| 433 | RESULT
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| 434 | number of actual neighbors found (either K or N, if K>N).
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| 435 |
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| 436 | This subroutine performs query and stores its result in the internal
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| 437 | structures of the KD-tree. You can use following subroutines to obtain
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| 438 | these results:
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| 439 | * KDTreeQueryResultsX() to get X-values
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| 440 | * KDTreeQueryResultsXY() to get X- and Y-values
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| 441 | * KDTreeQueryResultsTags() to get tag values
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| 442 | * KDTreeQueryResultsDistances() to get distances
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| 443 |
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| 444 | -- ALGLIB --
|
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| 445 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 446 | *************************************************************************/
|
---|
| 447 | public static int kdtreequeryknn(kdtree kdt, double[] x, int k, bool selfmatch)
|
---|
| 448 | {
|
---|
| 449 |
|
---|
| 450 | int result = nearestneighbor.kdtreequeryknn(kdt.innerobj, x, k, selfmatch);
|
---|
| 451 | return result;
|
---|
| 452 | }
|
---|
| 453 | public static int kdtreequeryknn(kdtree kdt, double[] x, int k)
|
---|
| 454 | {
|
---|
| 455 | bool selfmatch;
|
---|
| 456 |
|
---|
| 457 |
|
---|
| 458 | selfmatch = true;
|
---|
| 459 | int result = nearestneighbor.kdtreequeryknn(kdt.innerobj, x, k, selfmatch);
|
---|
| 460 |
|
---|
| 461 | return result;
|
---|
| 462 | }
|
---|
| 463 |
|
---|
| 464 | /*************************************************************************
|
---|
| 465 | R-NN query: all points within R-sphere centered at X
|
---|
| 466 |
|
---|
| 467 | INPUT PARAMETERS
|
---|
| 468 | KDT - KD-tree
|
---|
| 469 | X - point, array[0..NX-1].
|
---|
| 470 | R - radius of sphere (in corresponding norm), R>0
|
---|
| 471 | SelfMatch - whether self-matches are allowed:
|
---|
| 472 | * if True, nearest neighbor may be the point itself
|
---|
| 473 | (if it exists in original dataset)
|
---|
| 474 | * if False, then only points with non-zero distance
|
---|
| 475 | are returned
|
---|
| 476 | * if not given, considered True
|
---|
| 477 |
|
---|
| 478 | RESULT
|
---|
| 479 | number of neighbors found, >=0
|
---|
| 480 |
|
---|
| 481 | This subroutine performs query and stores its result in the internal
|
---|
| 482 | structures of the KD-tree. You can use following subroutines to obtain
|
---|
| 483 | actual results:
|
---|
| 484 | * KDTreeQueryResultsX() to get X-values
|
---|
| 485 | * KDTreeQueryResultsXY() to get X- and Y-values
|
---|
| 486 | * KDTreeQueryResultsTags() to get tag values
|
---|
| 487 | * KDTreeQueryResultsDistances() to get distances
|
---|
| 488 |
|
---|
| 489 | -- ALGLIB --
|
---|
| 490 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 491 | *************************************************************************/
|
---|
| 492 | public static int kdtreequeryrnn(kdtree kdt, double[] x, double r, bool selfmatch)
|
---|
| 493 | {
|
---|
| 494 |
|
---|
| 495 | int result = nearestneighbor.kdtreequeryrnn(kdt.innerobj, x, r, selfmatch);
|
---|
| 496 | return result;
|
---|
| 497 | }
|
---|
| 498 | public static int kdtreequeryrnn(kdtree kdt, double[] x, double r)
|
---|
| 499 | {
|
---|
| 500 | bool selfmatch;
|
---|
| 501 |
|
---|
| 502 |
|
---|
| 503 | selfmatch = true;
|
---|
| 504 | int result = nearestneighbor.kdtreequeryrnn(kdt.innerobj, x, r, selfmatch);
|
---|
| 505 |
|
---|
| 506 | return result;
|
---|
| 507 | }
|
---|
| 508 |
|
---|
| 509 | /*************************************************************************
|
---|
| 510 | K-NN query: approximate K nearest neighbors
|
---|
| 511 |
|
---|
| 512 | INPUT PARAMETERS
|
---|
| 513 | KDT - KD-tree
|
---|
| 514 | X - point, array[0..NX-1].
|
---|
| 515 | K - number of neighbors to return, K>=1
|
---|
| 516 | SelfMatch - whether self-matches are allowed:
|
---|
| 517 | * if True, nearest neighbor may be the point itself
|
---|
| 518 | (if it exists in original dataset)
|
---|
| 519 | * if False, then only points with non-zero distance
|
---|
| 520 | are returned
|
---|
| 521 | * if not given, considered True
|
---|
| 522 | Eps - approximation factor, Eps>=0. eps-approximate nearest
|
---|
| 523 | neighbor is a neighbor whose distance from X is at
|
---|
| 524 | most (1+eps) times distance of true nearest neighbor.
|
---|
| 525 |
|
---|
| 526 | RESULT
|
---|
| 527 | number of actual neighbors found (either K or N, if K>N).
|
---|
| 528 |
|
---|
| 529 | NOTES
|
---|
| 530 | significant performance gain may be achieved only when Eps is is on
|
---|
| 531 | the order of magnitude of 1 or larger.
|
---|
| 532 |
|
---|
| 533 | This subroutine performs query and stores its result in the internal
|
---|
| 534 | structures of the KD-tree. You can use following subroutines to obtain
|
---|
| 535 | these results:
|
---|
| 536 | * KDTreeQueryResultsX() to get X-values
|
---|
| 537 | * KDTreeQueryResultsXY() to get X- and Y-values
|
---|
| 538 | * KDTreeQueryResultsTags() to get tag values
|
---|
| 539 | * KDTreeQueryResultsDistances() to get distances
|
---|
| 540 |
|
---|
| 541 | -- ALGLIB --
|
---|
| 542 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 543 | *************************************************************************/
|
---|
| 544 | public static int kdtreequeryaknn(kdtree kdt, double[] x, int k, bool selfmatch, double eps)
|
---|
| 545 | {
|
---|
| 546 |
|
---|
| 547 | int result = nearestneighbor.kdtreequeryaknn(kdt.innerobj, x, k, selfmatch, eps);
|
---|
| 548 | return result;
|
---|
| 549 | }
|
---|
| 550 | public static int kdtreequeryaknn(kdtree kdt, double[] x, int k, double eps)
|
---|
| 551 | {
|
---|
| 552 | bool selfmatch;
|
---|
| 553 |
|
---|
| 554 |
|
---|
| 555 | selfmatch = true;
|
---|
| 556 | int result = nearestneighbor.kdtreequeryaknn(kdt.innerobj, x, k, selfmatch, eps);
|
---|
| 557 |
|
---|
| 558 | return result;
|
---|
| 559 | }
|
---|
| 560 |
|
---|
| 561 | /*************************************************************************
|
---|
| 562 | X-values from last query
|
---|
| 563 |
|
---|
| 564 | INPUT PARAMETERS
|
---|
| 565 | KDT - KD-tree
|
---|
| 566 | X - possibly pre-allocated buffer. If X is too small to store
|
---|
| 567 | result, it is resized. If size(X) is enough to store
|
---|
| 568 | result, it is left unchanged.
|
---|
| 569 |
|
---|
| 570 | OUTPUT PARAMETERS
|
---|
| 571 | X - rows are filled with X-values
|
---|
| 572 |
|
---|
| 573 | NOTES
|
---|
| 574 | 1. points are ordered by distance from the query point (first = closest)
|
---|
| 575 | 2. if XY is larger than required to store result, only leading part will
|
---|
| 576 | be overwritten; trailing part will be left unchanged. So if on input
|
---|
| 577 | XY = [[A,B],[C,D]], and result is [1,2], then on exit we will get
|
---|
| 578 | XY = [[1,2],[C,D]]. This is done purposely to increase performance; if
|
---|
| 579 | you want function to resize array according to result size, use
|
---|
| 580 | function with same name and suffix 'I'.
|
---|
| 581 |
|
---|
| 582 | SEE ALSO
|
---|
| 583 | * KDTreeQueryResultsXY() X- and Y-values
|
---|
| 584 | * KDTreeQueryResultsTags() tag values
|
---|
| 585 | * KDTreeQueryResultsDistances() distances
|
---|
| 586 |
|
---|
| 587 | -- ALGLIB --
|
---|
| 588 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 589 | *************************************************************************/
|
---|
| 590 | public static void kdtreequeryresultsx(kdtree kdt, ref double[,] x)
|
---|
| 591 | {
|
---|
| 592 |
|
---|
| 593 | nearestneighbor.kdtreequeryresultsx(kdt.innerobj, ref x);
|
---|
| 594 | return;
|
---|
| 595 | }
|
---|
| 596 |
|
---|
| 597 | /*************************************************************************
|
---|
| 598 | X- and Y-values from last query
|
---|
| 599 |
|
---|
| 600 | INPUT PARAMETERS
|
---|
| 601 | KDT - KD-tree
|
---|
| 602 | XY - possibly pre-allocated buffer. If XY is too small to store
|
---|
| 603 | result, it is resized. If size(XY) is enough to store
|
---|
| 604 | result, it is left unchanged.
|
---|
| 605 |
|
---|
| 606 | OUTPUT PARAMETERS
|
---|
| 607 | XY - rows are filled with points: first NX columns with
|
---|
| 608 | X-values, next NY columns - with Y-values.
|
---|
| 609 |
|
---|
| 610 | NOTES
|
---|
| 611 | 1. points are ordered by distance from the query point (first = closest)
|
---|
| 612 | 2. if XY is larger than required to store result, only leading part will
|
---|
| 613 | be overwritten; trailing part will be left unchanged. So if on input
|
---|
| 614 | XY = [[A,B],[C,D]], and result is [1,2], then on exit we will get
|
---|
| 615 | XY = [[1,2],[C,D]]. This is done purposely to increase performance; if
|
---|
| 616 | you want function to resize array according to result size, use
|
---|
| 617 | function with same name and suffix 'I'.
|
---|
| 618 |
|
---|
| 619 | SEE ALSO
|
---|
| 620 | * KDTreeQueryResultsX() X-values
|
---|
| 621 | * KDTreeQueryResultsTags() tag values
|
---|
| 622 | * KDTreeQueryResultsDistances() distances
|
---|
| 623 |
|
---|
| 624 | -- ALGLIB --
|
---|
| 625 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 626 | *************************************************************************/
|
---|
| 627 | public static void kdtreequeryresultsxy(kdtree kdt, ref double[,] xy)
|
---|
| 628 | {
|
---|
| 629 |
|
---|
| 630 | nearestneighbor.kdtreequeryresultsxy(kdt.innerobj, ref xy);
|
---|
| 631 | return;
|
---|
| 632 | }
|
---|
| 633 |
|
---|
| 634 | /*************************************************************************
|
---|
| 635 | Tags from last query
|
---|
| 636 |
|
---|
| 637 | INPUT PARAMETERS
|
---|
| 638 | KDT - KD-tree
|
---|
| 639 | Tags - possibly pre-allocated buffer. If X is too small to store
|
---|
| 640 | result, it is resized. If size(X) is enough to store
|
---|
| 641 | result, it is left unchanged.
|
---|
| 642 |
|
---|
| 643 | OUTPUT PARAMETERS
|
---|
| 644 | Tags - filled with tags associated with points,
|
---|
| 645 | or, when no tags were supplied, with zeros
|
---|
| 646 |
|
---|
| 647 | NOTES
|
---|
| 648 | 1. points are ordered by distance from the query point (first = closest)
|
---|
| 649 | 2. if XY is larger than required to store result, only leading part will
|
---|
| 650 | be overwritten; trailing part will be left unchanged. So if on input
|
---|
| 651 | XY = [[A,B],[C,D]], and result is [1,2], then on exit we will get
|
---|
| 652 | XY = [[1,2],[C,D]]. This is done purposely to increase performance; if
|
---|
| 653 | you want function to resize array according to result size, use
|
---|
| 654 | function with same name and suffix 'I'.
|
---|
| 655 |
|
---|
| 656 | SEE ALSO
|
---|
| 657 | * KDTreeQueryResultsX() X-values
|
---|
| 658 | * KDTreeQueryResultsXY() X- and Y-values
|
---|
| 659 | * KDTreeQueryResultsDistances() distances
|
---|
| 660 |
|
---|
| 661 | -- ALGLIB --
|
---|
| 662 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 663 | *************************************************************************/
|
---|
| 664 | public static void kdtreequeryresultstags(kdtree kdt, ref int[] tags)
|
---|
| 665 | {
|
---|
| 666 |
|
---|
| 667 | nearestneighbor.kdtreequeryresultstags(kdt.innerobj, ref tags);
|
---|
| 668 | return;
|
---|
| 669 | }
|
---|
| 670 |
|
---|
| 671 | /*************************************************************************
|
---|
| 672 | Distances from last query
|
---|
| 673 |
|
---|
| 674 | INPUT PARAMETERS
|
---|
| 675 | KDT - KD-tree
|
---|
| 676 | R - possibly pre-allocated buffer. If X is too small to store
|
---|
| 677 | result, it is resized. If size(X) is enough to store
|
---|
| 678 | result, it is left unchanged.
|
---|
| 679 |
|
---|
| 680 | OUTPUT PARAMETERS
|
---|
| 681 | R - filled with distances (in corresponding norm)
|
---|
| 682 |
|
---|
| 683 | NOTES
|
---|
| 684 | 1. points are ordered by distance from the query point (first = closest)
|
---|
| 685 | 2. if XY is larger than required to store result, only leading part will
|
---|
| 686 | be overwritten; trailing part will be left unchanged. So if on input
|
---|
| 687 | XY = [[A,B],[C,D]], and result is [1,2], then on exit we will get
|
---|
| 688 | XY = [[1,2],[C,D]]. This is done purposely to increase performance; if
|
---|
| 689 | you want function to resize array according to result size, use
|
---|
| 690 | function with same name and suffix 'I'.
|
---|
| 691 |
|
---|
| 692 | SEE ALSO
|
---|
| 693 | * KDTreeQueryResultsX() X-values
|
---|
| 694 | * KDTreeQueryResultsXY() X- and Y-values
|
---|
| 695 | * KDTreeQueryResultsTags() tag values
|
---|
| 696 |
|
---|
| 697 | -- ALGLIB --
|
---|
| 698 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 699 | *************************************************************************/
|
---|
| 700 | public static void kdtreequeryresultsdistances(kdtree kdt, ref double[] r)
|
---|
| 701 | {
|
---|
| 702 |
|
---|
| 703 | nearestneighbor.kdtreequeryresultsdistances(kdt.innerobj, ref r);
|
---|
| 704 | return;
|
---|
| 705 | }
|
---|
| 706 |
|
---|
| 707 | /*************************************************************************
|
---|
| 708 | X-values from last query; 'interactive' variant for languages like Python
|
---|
| 709 | which support constructs like "X = KDTreeQueryResultsXI(KDT)" and
|
---|
| 710 | interactive mode of interpreter.
|
---|
| 711 |
|
---|
| 712 | This function allocates new array on each call, so it is significantly
|
---|
| 713 | slower than its 'non-interactive' counterpart, but it is more convenient
|
---|
| 714 | when you call it from command line.
|
---|
| 715 |
|
---|
| 716 | -- ALGLIB --
|
---|
| 717 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 718 | *************************************************************************/
|
---|
| 719 | public static void kdtreequeryresultsxi(kdtree kdt, out double[,] x)
|
---|
| 720 | {
|
---|
| 721 | x = new double[0,0];
|
---|
| 722 | nearestneighbor.kdtreequeryresultsxi(kdt.innerobj, ref x);
|
---|
| 723 | return;
|
---|
| 724 | }
|
---|
| 725 |
|
---|
| 726 | /*************************************************************************
|
---|
| 727 | XY-values from last query; 'interactive' variant for languages like Python
|
---|
| 728 | which support constructs like "XY = KDTreeQueryResultsXYI(KDT)" and
|
---|
| 729 | interactive mode of interpreter.
|
---|
| 730 |
|
---|
| 731 | This function allocates new array on each call, so it is significantly
|
---|
| 732 | slower than its 'non-interactive' counterpart, but it is more convenient
|
---|
| 733 | when you call it from command line.
|
---|
| 734 |
|
---|
| 735 | -- ALGLIB --
|
---|
| 736 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 737 | *************************************************************************/
|
---|
| 738 | public static void kdtreequeryresultsxyi(kdtree kdt, out double[,] xy)
|
---|
| 739 | {
|
---|
| 740 | xy = new double[0,0];
|
---|
| 741 | nearestneighbor.kdtreequeryresultsxyi(kdt.innerobj, ref xy);
|
---|
| 742 | return;
|
---|
| 743 | }
|
---|
| 744 |
|
---|
| 745 | /*************************************************************************
|
---|
| 746 | Tags from last query; 'interactive' variant for languages like Python
|
---|
| 747 | which support constructs like "Tags = KDTreeQueryResultsTagsI(KDT)" and
|
---|
| 748 | interactive mode of interpreter.
|
---|
| 749 |
|
---|
| 750 | This function allocates new array on each call, so it is significantly
|
---|
| 751 | slower than its 'non-interactive' counterpart, but it is more convenient
|
---|
| 752 | when you call it from command line.
|
---|
| 753 |
|
---|
| 754 | -- ALGLIB --
|
---|
| 755 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 756 | *************************************************************************/
|
---|
| 757 | public static void kdtreequeryresultstagsi(kdtree kdt, out int[] tags)
|
---|
| 758 | {
|
---|
| 759 | tags = new int[0];
|
---|
| 760 | nearestneighbor.kdtreequeryresultstagsi(kdt.innerobj, ref tags);
|
---|
| 761 | return;
|
---|
| 762 | }
|
---|
| 763 |
|
---|
| 764 | /*************************************************************************
|
---|
| 765 | Distances from last query; 'interactive' variant for languages like Python
|
---|
| 766 | which support constructs like "R = KDTreeQueryResultsDistancesI(KDT)"
|
---|
| 767 | and interactive mode of interpreter.
|
---|
| 768 |
|
---|
| 769 | This function allocates new array on each call, so it is significantly
|
---|
| 770 | slower than its 'non-interactive' counterpart, but it is more convenient
|
---|
| 771 | when you call it from command line.
|
---|
| 772 |
|
---|
| 773 | -- ALGLIB --
|
---|
| 774 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 775 | *************************************************************************/
|
---|
| 776 | public static void kdtreequeryresultsdistancesi(kdtree kdt, out double[] r)
|
---|
| 777 | {
|
---|
| 778 | r = new double[0];
|
---|
| 779 | nearestneighbor.kdtreequeryresultsdistancesi(kdt.innerobj, ref r);
|
---|
| 780 | return;
|
---|
| 781 | }
|
---|
| 782 |
|
---|
| 783 | }
|
---|
| 784 | public partial class alglib
|
---|
| 785 | {
|
---|
| 786 | public class hqrnd
|
---|
| 787 | {
|
---|
| 788 | /*************************************************************************
|
---|
| 789 | Portable high quality random number generator state.
|
---|
| 790 | Initialized with HQRNDRandomize() or HQRNDSeed().
|
---|
| 791 |
|
---|
| 792 | Fields:
|
---|
| 793 | S1, S2 - seed values
|
---|
| 794 | V - precomputed value
|
---|
| 795 | MagicV - 'magic' value used to determine whether State structure
|
---|
| 796 | was correctly initialized.
|
---|
| 797 | *************************************************************************/
|
---|
| 798 | public class hqrndstate : apobject
|
---|
| 799 | {
|
---|
| 800 | public int s1;
|
---|
| 801 | public int s2;
|
---|
| 802 | public double v;
|
---|
| 803 | public int magicv;
|
---|
| 804 | public hqrndstate()
|
---|
| 805 | {
|
---|
| 806 | init();
|
---|
| 807 | }
|
---|
| 808 | public override void init()
|
---|
| 809 | {
|
---|
| 810 | }
|
---|
| 811 | public override alglib.apobject make_copy()
|
---|
| 812 | {
|
---|
| 813 | hqrndstate _result = new hqrndstate();
|
---|
| 814 | _result.s1 = s1;
|
---|
| 815 | _result.s2 = s2;
|
---|
| 816 | _result.v = v;
|
---|
| 817 | _result.magicv = magicv;
|
---|
| 818 | return _result;
|
---|
| 819 | }
|
---|
| 820 | };
|
---|
| 821 |
|
---|
| 822 |
|
---|
| 823 |
|
---|
| 824 |
|
---|
| 825 | public const int hqrndmax = 2147483563;
|
---|
| 826 | public const int hqrndm1 = 2147483563;
|
---|
| 827 | public const int hqrndm2 = 2147483399;
|
---|
| 828 | public const int hqrndmagic = 1634357784;
|
---|
| 829 |
|
---|
| 830 |
|
---|
| 831 | /*************************************************************************
|
---|
| 832 | HQRNDState initialization with random values which come from standard
|
---|
| 833 | RNG.
|
---|
| 834 |
|
---|
| 835 | -- ALGLIB --
|
---|
| 836 | Copyright 02.12.2009 by Bochkanov Sergey
|
---|
| 837 | *************************************************************************/
|
---|
| 838 | public static void hqrndrandomize(hqrndstate state)
|
---|
| 839 | {
|
---|
| 840 | int s0 = 0;
|
---|
| 841 | int s1 = 0;
|
---|
| 842 |
|
---|
| 843 | s0 = math.randominteger(hqrndm1);
|
---|
| 844 | s1 = math.randominteger(hqrndm2);
|
---|
| 845 | hqrndseed(s0, s1, state);
|
---|
| 846 | }
|
---|
| 847 |
|
---|
| 848 |
|
---|
| 849 | /*************************************************************************
|
---|
| 850 | HQRNDState initialization with seed values
|
---|
| 851 |
|
---|
| 852 | -- ALGLIB --
|
---|
| 853 | Copyright 02.12.2009 by Bochkanov Sergey
|
---|
| 854 | *************************************************************************/
|
---|
| 855 | public static void hqrndseed(int s1,
|
---|
| 856 | int s2,
|
---|
| 857 | hqrndstate state)
|
---|
| 858 | {
|
---|
| 859 | state.s1 = s1%(hqrndm1-1)+1;
|
---|
| 860 | state.s2 = s2%(hqrndm2-1)+1;
|
---|
| 861 | state.v = (double)1/(double)hqrndmax;
|
---|
| 862 | state.magicv = hqrndmagic;
|
---|
| 863 | }
|
---|
| 864 |
|
---|
| 865 |
|
---|
| 866 | /*************************************************************************
|
---|
| 867 | This function generates random real number in (0,1),
|
---|
| 868 | not including interval boundaries
|
---|
| 869 |
|
---|
| 870 | State structure must be initialized with HQRNDRandomize() or HQRNDSeed().
|
---|
| 871 |
|
---|
| 872 | -- ALGLIB --
|
---|
| 873 | Copyright 02.12.2009 by Bochkanov Sergey
|
---|
| 874 | *************************************************************************/
|
---|
| 875 | public static double hqrnduniformr(hqrndstate state)
|
---|
| 876 | {
|
---|
| 877 | double result = 0;
|
---|
| 878 |
|
---|
| 879 | result = state.v*hqrndintegerbase(state);
|
---|
| 880 | return result;
|
---|
| 881 | }
|
---|
| 882 |
|
---|
| 883 |
|
---|
| 884 | /*************************************************************************
|
---|
| 885 | This function generates random integer number in [0, N)
|
---|
| 886 |
|
---|
| 887 | 1. N must be less than HQRNDMax-1.
|
---|
| 888 | 2. State structure must be initialized with HQRNDRandomize() or HQRNDSeed()
|
---|
| 889 |
|
---|
| 890 | -- ALGLIB --
|
---|
| 891 | Copyright 02.12.2009 by Bochkanov Sergey
|
---|
| 892 | *************************************************************************/
|
---|
| 893 | public static int hqrnduniformi(hqrndstate state,
|
---|
| 894 | int n)
|
---|
| 895 | {
|
---|
| 896 | int result = 0;
|
---|
| 897 | int mx = 0;
|
---|
| 898 |
|
---|
| 899 |
|
---|
| 900 | //
|
---|
| 901 | // Correct handling of N's close to RNDBaseMax
|
---|
| 902 | // (avoiding skewed distributions for RNDBaseMax<>K*N)
|
---|
| 903 | //
|
---|
| 904 | alglib.ap.assert(n>0, "HQRNDUniformI: N<=0!");
|
---|
| 905 | alglib.ap.assert(n<hqrndmax-1, "HQRNDUniformI: N>=RNDBaseMax-1!");
|
---|
| 906 | mx = hqrndmax-1-(hqrndmax-1)%n;
|
---|
| 907 | do
|
---|
| 908 | {
|
---|
| 909 | result = hqrndintegerbase(state)-1;
|
---|
| 910 | }
|
---|
| 911 | while( result>=mx );
|
---|
| 912 | result = result%n;
|
---|
| 913 | return result;
|
---|
| 914 | }
|
---|
| 915 |
|
---|
| 916 |
|
---|
| 917 | /*************************************************************************
|
---|
| 918 | Random number generator: normal numbers
|
---|
| 919 |
|
---|
| 920 | This function generates one random number from normal distribution.
|
---|
| 921 | Its performance is equal to that of HQRNDNormal2()
|
---|
| 922 |
|
---|
| 923 | State structure must be initialized with HQRNDRandomize() or HQRNDSeed().
|
---|
| 924 |
|
---|
| 925 | -- ALGLIB --
|
---|
| 926 | Copyright 02.12.2009 by Bochkanov Sergey
|
---|
| 927 | *************************************************************************/
|
---|
| 928 | public static double hqrndnormal(hqrndstate state)
|
---|
| 929 | {
|
---|
| 930 | double result = 0;
|
---|
| 931 | double v1 = 0;
|
---|
| 932 | double v2 = 0;
|
---|
| 933 |
|
---|
| 934 | hqrndnormal2(state, ref v1, ref v2);
|
---|
| 935 | result = v1;
|
---|
| 936 | return result;
|
---|
| 937 | }
|
---|
| 938 |
|
---|
| 939 |
|
---|
| 940 | /*************************************************************************
|
---|
| 941 | Random number generator: random X and Y such that X^2+Y^2=1
|
---|
| 942 |
|
---|
| 943 | State structure must be initialized with HQRNDRandomize() or HQRNDSeed().
|
---|
| 944 |
|
---|
| 945 | -- ALGLIB --
|
---|
| 946 | Copyright 02.12.2009 by Bochkanov Sergey
|
---|
| 947 | *************************************************************************/
|
---|
| 948 | public static void hqrndunit2(hqrndstate state,
|
---|
| 949 | ref double x,
|
---|
| 950 | ref double y)
|
---|
| 951 | {
|
---|
| 952 | double v = 0;
|
---|
| 953 | double mx = 0;
|
---|
| 954 | double mn = 0;
|
---|
| 955 |
|
---|
| 956 | x = 0;
|
---|
| 957 | y = 0;
|
---|
| 958 |
|
---|
| 959 | do
|
---|
| 960 | {
|
---|
| 961 | hqrndnormal2(state, ref x, ref y);
|
---|
| 962 | }
|
---|
| 963 | while( !((double)(x)!=(double)(0) || (double)(y)!=(double)(0)) );
|
---|
| 964 | mx = Math.Max(Math.Abs(x), Math.Abs(y));
|
---|
| 965 | mn = Math.Min(Math.Abs(x), Math.Abs(y));
|
---|
| 966 | v = mx*Math.Sqrt(1+math.sqr(mn/mx));
|
---|
| 967 | x = x/v;
|
---|
| 968 | y = y/v;
|
---|
| 969 | }
|
---|
| 970 |
|
---|
| 971 |
|
---|
| 972 | /*************************************************************************
|
---|
| 973 | Random number generator: normal numbers
|
---|
| 974 |
|
---|
| 975 | This function generates two independent random numbers from normal
|
---|
| 976 | distribution. Its performance is equal to that of HQRNDNormal()
|
---|
| 977 |
|
---|
| 978 | State structure must be initialized with HQRNDRandomize() or HQRNDSeed().
|
---|
| 979 |
|
---|
| 980 | -- ALGLIB --
|
---|
| 981 | Copyright 02.12.2009 by Bochkanov Sergey
|
---|
| 982 | *************************************************************************/
|
---|
| 983 | public static void hqrndnormal2(hqrndstate state,
|
---|
| 984 | ref double x1,
|
---|
| 985 | ref double x2)
|
---|
| 986 | {
|
---|
| 987 | double u = 0;
|
---|
| 988 | double v = 0;
|
---|
| 989 | double s = 0;
|
---|
| 990 |
|
---|
| 991 | x1 = 0;
|
---|
| 992 | x2 = 0;
|
---|
| 993 |
|
---|
| 994 | while( true )
|
---|
| 995 | {
|
---|
| 996 | u = 2*hqrnduniformr(state)-1;
|
---|
| 997 | v = 2*hqrnduniformr(state)-1;
|
---|
| 998 | s = math.sqr(u)+math.sqr(v);
|
---|
| 999 | if( (double)(s)>(double)(0) && (double)(s)<(double)(1) )
|
---|
| 1000 | {
|
---|
| 1001 |
|
---|
| 1002 | //
|
---|
| 1003 | // two Sqrt's instead of one to
|
---|
| 1004 | // avoid overflow when S is too small
|
---|
| 1005 | //
|
---|
| 1006 | s = Math.Sqrt(-(2*Math.Log(s)))/Math.Sqrt(s);
|
---|
| 1007 | x1 = u*s;
|
---|
| 1008 | x2 = v*s;
|
---|
| 1009 | return;
|
---|
| 1010 | }
|
---|
| 1011 | }
|
---|
| 1012 | }
|
---|
| 1013 |
|
---|
| 1014 |
|
---|
| 1015 | /*************************************************************************
|
---|
| 1016 | Random number generator: exponential distribution
|
---|
| 1017 |
|
---|
| 1018 | State structure must be initialized with HQRNDRandomize() or HQRNDSeed().
|
---|
| 1019 |
|
---|
| 1020 | -- ALGLIB --
|
---|
| 1021 | Copyright 11.08.2007 by Bochkanov Sergey
|
---|
| 1022 | *************************************************************************/
|
---|
| 1023 | public static double hqrndexponential(hqrndstate state,
|
---|
| 1024 | double lambdav)
|
---|
| 1025 | {
|
---|
| 1026 | double result = 0;
|
---|
| 1027 |
|
---|
| 1028 | alglib.ap.assert((double)(lambdav)>(double)(0), "HQRNDExponential: LambdaV<=0!");
|
---|
| 1029 | result = -(Math.Log(hqrnduniformr(state))/lambdav);
|
---|
| 1030 | return result;
|
---|
| 1031 | }
|
---|
| 1032 |
|
---|
| 1033 |
|
---|
| 1034 | /*************************************************************************
|
---|
| 1035 | This function generates random number from discrete distribution given by
|
---|
| 1036 | finite sample X.
|
---|
| 1037 |
|
---|
| 1038 | INPUT PARAMETERS
|
---|
| 1039 | State - high quality random number generator, must be
|
---|
| 1040 | initialized with HQRNDRandomize() or HQRNDSeed().
|
---|
| 1041 | X - finite sample
|
---|
| 1042 | N - number of elements to use, N>=1
|
---|
| 1043 |
|
---|
| 1044 | RESULT
|
---|
| 1045 | this function returns one of the X[i] for random i=0..N-1
|
---|
| 1046 |
|
---|
| 1047 | -- ALGLIB --
|
---|
| 1048 | Copyright 08.11.2011 by Bochkanov Sergey
|
---|
| 1049 | *************************************************************************/
|
---|
| 1050 | public static double hqrnddiscrete(hqrndstate state,
|
---|
| 1051 | double[] x,
|
---|
| 1052 | int n)
|
---|
| 1053 | {
|
---|
| 1054 | double result = 0;
|
---|
| 1055 |
|
---|
| 1056 | alglib.ap.assert(n>0, "HQRNDDiscrete: N<=0");
|
---|
| 1057 | alglib.ap.assert(n<=alglib.ap.len(x), "HQRNDDiscrete: Length(X)<N");
|
---|
| 1058 | result = x[hqrnduniformi(state, n)];
|
---|
| 1059 | return result;
|
---|
| 1060 | }
|
---|
| 1061 |
|
---|
| 1062 |
|
---|
| 1063 | /*************************************************************************
|
---|
| 1064 | This function generates random number from continuous distribution given
|
---|
| 1065 | by finite sample X.
|
---|
| 1066 |
|
---|
| 1067 | INPUT PARAMETERS
|
---|
| 1068 | State - high quality random number generator, must be
|
---|
| 1069 | initialized with HQRNDRandomize() or HQRNDSeed().
|
---|
| 1070 | X - finite sample, array[N] (can be larger, in this case only
|
---|
| 1071 | leading N elements are used). THIS ARRAY MUST BE SORTED BY
|
---|
| 1072 | ASCENDING.
|
---|
| 1073 | N - number of elements to use, N>=1
|
---|
| 1074 |
|
---|
| 1075 | RESULT
|
---|
| 1076 | this function returns random number from continuous distribution which
|
---|
| 1077 | tries to approximate X as mush as possible. min(X)<=Result<=max(X).
|
---|
| 1078 |
|
---|
| 1079 | -- ALGLIB --
|
---|
| 1080 | Copyright 08.11.2011 by Bochkanov Sergey
|
---|
| 1081 | *************************************************************************/
|
---|
| 1082 | public static double hqrndcontinuous(hqrndstate state,
|
---|
| 1083 | double[] x,
|
---|
| 1084 | int n)
|
---|
| 1085 | {
|
---|
| 1086 | double result = 0;
|
---|
| 1087 | double mx = 0;
|
---|
| 1088 | double mn = 0;
|
---|
| 1089 | int i = 0;
|
---|
| 1090 |
|
---|
| 1091 | alglib.ap.assert(n>0, "HQRNDContinuous: N<=0");
|
---|
| 1092 | alglib.ap.assert(n<=alglib.ap.len(x), "HQRNDContinuous: Length(X)<N");
|
---|
| 1093 | if( n==1 )
|
---|
| 1094 | {
|
---|
| 1095 | result = x[0];
|
---|
| 1096 | return result;
|
---|
| 1097 | }
|
---|
| 1098 | i = hqrnduniformi(state, n-1);
|
---|
| 1099 | mn = x[i];
|
---|
| 1100 | mx = x[i+1];
|
---|
| 1101 | alglib.ap.assert((double)(mx)>=(double)(mn), "HQRNDDiscrete: X is not sorted by ascending");
|
---|
| 1102 | if( (double)(mx)!=(double)(mn) )
|
---|
| 1103 | {
|
---|
| 1104 | result = (mx-mn)*hqrnduniformr(state)+mn;
|
---|
| 1105 | }
|
---|
| 1106 | else
|
---|
| 1107 | {
|
---|
| 1108 | result = mn;
|
---|
| 1109 | }
|
---|
| 1110 | return result;
|
---|
| 1111 | }
|
---|
| 1112 |
|
---|
| 1113 |
|
---|
| 1114 | /*************************************************************************
|
---|
| 1115 |
|
---|
| 1116 | L'Ecuyer, Efficient and portable combined random number generators
|
---|
| 1117 | *************************************************************************/
|
---|
| 1118 | private static int hqrndintegerbase(hqrndstate state)
|
---|
| 1119 | {
|
---|
| 1120 | int result = 0;
|
---|
| 1121 | int k = 0;
|
---|
| 1122 |
|
---|
| 1123 | alglib.ap.assert(state.magicv==hqrndmagic, "HQRNDIntegerBase: State is not correctly initialized!");
|
---|
| 1124 | k = state.s1/53668;
|
---|
| 1125 | state.s1 = 40014*(state.s1-k*53668)-k*12211;
|
---|
| 1126 | if( state.s1<0 )
|
---|
| 1127 | {
|
---|
| 1128 | state.s1 = state.s1+2147483563;
|
---|
| 1129 | }
|
---|
| 1130 | k = state.s2/52774;
|
---|
| 1131 | state.s2 = 40692*(state.s2-k*52774)-k*3791;
|
---|
| 1132 | if( state.s2<0 )
|
---|
| 1133 | {
|
---|
| 1134 | state.s2 = state.s2+2147483399;
|
---|
| 1135 | }
|
---|
| 1136 |
|
---|
| 1137 | //
|
---|
| 1138 | // Result
|
---|
| 1139 | //
|
---|
| 1140 | result = state.s1-state.s2;
|
---|
| 1141 | if( result<1 )
|
---|
| 1142 | {
|
---|
| 1143 | result = result+2147483562;
|
---|
| 1144 | }
|
---|
| 1145 | return result;
|
---|
| 1146 | }
|
---|
| 1147 |
|
---|
| 1148 |
|
---|
| 1149 | }
|
---|
| 1150 | public class nearestneighbor
|
---|
| 1151 | {
|
---|
| 1152 | public class kdtree : apobject
|
---|
| 1153 | {
|
---|
| 1154 | public int n;
|
---|
| 1155 | public int nx;
|
---|
| 1156 | public int ny;
|
---|
| 1157 | public int normtype;
|
---|
| 1158 | public double[,] xy;
|
---|
| 1159 | public int[] tags;
|
---|
| 1160 | public double[] boxmin;
|
---|
| 1161 | public double[] boxmax;
|
---|
| 1162 | public int[] nodes;
|
---|
| 1163 | public double[] splits;
|
---|
| 1164 | public double[] x;
|
---|
| 1165 | public int kneeded;
|
---|
| 1166 | public double rneeded;
|
---|
| 1167 | public bool selfmatch;
|
---|
| 1168 | public double approxf;
|
---|
| 1169 | public int kcur;
|
---|
| 1170 | public int[] idx;
|
---|
| 1171 | public double[] r;
|
---|
| 1172 | public double[] buf;
|
---|
| 1173 | public double[] curboxmin;
|
---|
| 1174 | public double[] curboxmax;
|
---|
| 1175 | public double curdist;
|
---|
| 1176 | public int debugcounter;
|
---|
| 1177 | public kdtree()
|
---|
| 1178 | {
|
---|
| 1179 | init();
|
---|
| 1180 | }
|
---|
| 1181 | public override void init()
|
---|
| 1182 | {
|
---|
| 1183 | xy = new double[0,0];
|
---|
| 1184 | tags = new int[0];
|
---|
| 1185 | boxmin = new double[0];
|
---|
| 1186 | boxmax = new double[0];
|
---|
| 1187 | nodes = new int[0];
|
---|
| 1188 | splits = new double[0];
|
---|
| 1189 | x = new double[0];
|
---|
| 1190 | idx = new int[0];
|
---|
| 1191 | r = new double[0];
|
---|
| 1192 | buf = new double[0];
|
---|
| 1193 | curboxmin = new double[0];
|
---|
| 1194 | curboxmax = new double[0];
|
---|
| 1195 | }
|
---|
| 1196 | public override alglib.apobject make_copy()
|
---|
| 1197 | {
|
---|
| 1198 | kdtree _result = new kdtree();
|
---|
| 1199 | _result.n = n;
|
---|
| 1200 | _result.nx = nx;
|
---|
| 1201 | _result.ny = ny;
|
---|
| 1202 | _result.normtype = normtype;
|
---|
| 1203 | _result.xy = (double[,])xy.Clone();
|
---|
| 1204 | _result.tags = (int[])tags.Clone();
|
---|
| 1205 | _result.boxmin = (double[])boxmin.Clone();
|
---|
| 1206 | _result.boxmax = (double[])boxmax.Clone();
|
---|
| 1207 | _result.nodes = (int[])nodes.Clone();
|
---|
| 1208 | _result.splits = (double[])splits.Clone();
|
---|
| 1209 | _result.x = (double[])x.Clone();
|
---|
| 1210 | _result.kneeded = kneeded;
|
---|
| 1211 | _result.rneeded = rneeded;
|
---|
| 1212 | _result.selfmatch = selfmatch;
|
---|
| 1213 | _result.approxf = approxf;
|
---|
| 1214 | _result.kcur = kcur;
|
---|
| 1215 | _result.idx = (int[])idx.Clone();
|
---|
| 1216 | _result.r = (double[])r.Clone();
|
---|
| 1217 | _result.buf = (double[])buf.Clone();
|
---|
| 1218 | _result.curboxmin = (double[])curboxmin.Clone();
|
---|
| 1219 | _result.curboxmax = (double[])curboxmax.Clone();
|
---|
| 1220 | _result.curdist = curdist;
|
---|
| 1221 | _result.debugcounter = debugcounter;
|
---|
| 1222 | return _result;
|
---|
| 1223 | }
|
---|
| 1224 | };
|
---|
| 1225 |
|
---|
| 1226 |
|
---|
| 1227 |
|
---|
| 1228 |
|
---|
| 1229 | public const int splitnodesize = 6;
|
---|
| 1230 | public const int kdtreefirstversion = 0;
|
---|
| 1231 |
|
---|
| 1232 |
|
---|
| 1233 | /*************************************************************************
|
---|
| 1234 | KD-tree creation
|
---|
| 1235 |
|
---|
| 1236 | This subroutine creates KD-tree from set of X-values and optional Y-values
|
---|
| 1237 |
|
---|
| 1238 | INPUT PARAMETERS
|
---|
| 1239 | XY - dataset, array[0..N-1,0..NX+NY-1].
|
---|
| 1240 | one row corresponds to one point.
|
---|
| 1241 | first NX columns contain X-values, next NY (NY may be zero)
|
---|
| 1242 | columns may contain associated Y-values
|
---|
| 1243 | N - number of points, N>=0.
|
---|
| 1244 | NX - space dimension, NX>=1.
|
---|
| 1245 | NY - number of optional Y-values, NY>=0.
|
---|
| 1246 | NormType- norm type:
|
---|
| 1247 | * 0 denotes infinity-norm
|
---|
| 1248 | * 1 denotes 1-norm
|
---|
| 1249 | * 2 denotes 2-norm (Euclidean norm)
|
---|
| 1250 |
|
---|
| 1251 | OUTPUT PARAMETERS
|
---|
| 1252 | KDT - KD-tree
|
---|
| 1253 |
|
---|
| 1254 |
|
---|
| 1255 | NOTES
|
---|
| 1256 |
|
---|
| 1257 | 1. KD-tree creation have O(N*logN) complexity and O(N*(2*NX+NY)) memory
|
---|
| 1258 | requirements.
|
---|
| 1259 | 2. Although KD-trees may be used with any combination of N and NX, they
|
---|
| 1260 | are more efficient than brute-force search only when N >> 4^NX. So they
|
---|
| 1261 | are most useful in low-dimensional tasks (NX=2, NX=3). NX=1 is another
|
---|
| 1262 | inefficient case, because simple binary search (without additional
|
---|
| 1263 | structures) is much more efficient in such tasks than KD-trees.
|
---|
| 1264 |
|
---|
| 1265 | -- ALGLIB --
|
---|
| 1266 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 1267 | *************************************************************************/
|
---|
| 1268 | public static void kdtreebuild(double[,] xy,
|
---|
| 1269 | int n,
|
---|
| 1270 | int nx,
|
---|
| 1271 | int ny,
|
---|
| 1272 | int normtype,
|
---|
| 1273 | kdtree kdt)
|
---|
| 1274 | {
|
---|
| 1275 | int[] tags = new int[0];
|
---|
| 1276 | int i = 0;
|
---|
| 1277 |
|
---|
| 1278 | alglib.ap.assert(n>=0, "KDTreeBuild: N<0");
|
---|
| 1279 | alglib.ap.assert(nx>=1, "KDTreeBuild: NX<1");
|
---|
| 1280 | alglib.ap.assert(ny>=0, "KDTreeBuild: NY<0");
|
---|
| 1281 | alglib.ap.assert(normtype>=0 && normtype<=2, "KDTreeBuild: incorrect NormType");
|
---|
| 1282 | alglib.ap.assert(alglib.ap.rows(xy)>=n, "KDTreeBuild: rows(X)<N");
|
---|
| 1283 | alglib.ap.assert(alglib.ap.cols(xy)>=nx+ny || n==0, "KDTreeBuild: cols(X)<NX+NY");
|
---|
| 1284 | alglib.ap.assert(apserv.apservisfinitematrix(xy, n, nx+ny), "KDTreeBuild: XY contains infinite or NaN values");
|
---|
| 1285 | if( n>0 )
|
---|
| 1286 | {
|
---|
| 1287 | tags = new int[n];
|
---|
| 1288 | for(i=0; i<=n-1; i++)
|
---|
| 1289 | {
|
---|
| 1290 | tags[i] = 0;
|
---|
| 1291 | }
|
---|
| 1292 | }
|
---|
| 1293 | kdtreebuildtagged(xy, tags, n, nx, ny, normtype, kdt);
|
---|
| 1294 | }
|
---|
| 1295 |
|
---|
| 1296 |
|
---|
| 1297 | /*************************************************************************
|
---|
| 1298 | KD-tree creation
|
---|
| 1299 |
|
---|
| 1300 | This subroutine creates KD-tree from set of X-values, integer tags and
|
---|
| 1301 | optional Y-values
|
---|
| 1302 |
|
---|
| 1303 | INPUT PARAMETERS
|
---|
| 1304 | XY - dataset, array[0..N-1,0..NX+NY-1].
|
---|
| 1305 | one row corresponds to one point.
|
---|
| 1306 | first NX columns contain X-values, next NY (NY may be zero)
|
---|
| 1307 | columns may contain associated Y-values
|
---|
| 1308 | Tags - tags, array[0..N-1], contains integer tags associated
|
---|
| 1309 | with points.
|
---|
| 1310 | N - number of points, N>=0
|
---|
| 1311 | NX - space dimension, NX>=1.
|
---|
| 1312 | NY - number of optional Y-values, NY>=0.
|
---|
| 1313 | NormType- norm type:
|
---|
| 1314 | * 0 denotes infinity-norm
|
---|
| 1315 | * 1 denotes 1-norm
|
---|
| 1316 | * 2 denotes 2-norm (Euclidean norm)
|
---|
| 1317 |
|
---|
| 1318 | OUTPUT PARAMETERS
|
---|
| 1319 | KDT - KD-tree
|
---|
| 1320 |
|
---|
| 1321 | NOTES
|
---|
| 1322 |
|
---|
| 1323 | 1. KD-tree creation have O(N*logN) complexity and O(N*(2*NX+NY)) memory
|
---|
| 1324 | requirements.
|
---|
| 1325 | 2. Although KD-trees may be used with any combination of N and NX, they
|
---|
| 1326 | are more efficient than brute-force search only when N >> 4^NX. So they
|
---|
| 1327 | are most useful in low-dimensional tasks (NX=2, NX=3). NX=1 is another
|
---|
| 1328 | inefficient case, because simple binary search (without additional
|
---|
| 1329 | structures) is much more efficient in such tasks than KD-trees.
|
---|
| 1330 |
|
---|
| 1331 | -- ALGLIB --
|
---|
| 1332 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 1333 | *************************************************************************/
|
---|
| 1334 | public static void kdtreebuildtagged(double[,] xy,
|
---|
| 1335 | int[] tags,
|
---|
| 1336 | int n,
|
---|
| 1337 | int nx,
|
---|
| 1338 | int ny,
|
---|
| 1339 | int normtype,
|
---|
| 1340 | kdtree kdt)
|
---|
| 1341 | {
|
---|
| 1342 | int i = 0;
|
---|
| 1343 | int j = 0;
|
---|
| 1344 | int maxnodes = 0;
|
---|
| 1345 | int nodesoffs = 0;
|
---|
| 1346 | int splitsoffs = 0;
|
---|
| 1347 | int i_ = 0;
|
---|
| 1348 | int i1_ = 0;
|
---|
| 1349 |
|
---|
| 1350 | alglib.ap.assert(n>=0, "KDTreeBuildTagged: N<0");
|
---|
| 1351 | alglib.ap.assert(nx>=1, "KDTreeBuildTagged: NX<1");
|
---|
| 1352 | alglib.ap.assert(ny>=0, "KDTreeBuildTagged: NY<0");
|
---|
| 1353 | alglib.ap.assert(normtype>=0 && normtype<=2, "KDTreeBuildTagged: incorrect NormType");
|
---|
| 1354 | alglib.ap.assert(alglib.ap.rows(xy)>=n, "KDTreeBuildTagged: rows(X)<N");
|
---|
| 1355 | alglib.ap.assert(alglib.ap.cols(xy)>=nx+ny || n==0, "KDTreeBuildTagged: cols(X)<NX+NY");
|
---|
| 1356 | alglib.ap.assert(apserv.apservisfinitematrix(xy, n, nx+ny), "KDTreeBuildTagged: XY contains infinite or NaN values");
|
---|
| 1357 |
|
---|
| 1358 | //
|
---|
| 1359 | // initialize
|
---|
| 1360 | //
|
---|
| 1361 | kdt.n = n;
|
---|
| 1362 | kdt.nx = nx;
|
---|
| 1363 | kdt.ny = ny;
|
---|
| 1364 | kdt.normtype = normtype;
|
---|
| 1365 | kdt.kcur = 0;
|
---|
| 1366 |
|
---|
| 1367 | //
|
---|
| 1368 | // N=0 => quick exit
|
---|
| 1369 | //
|
---|
| 1370 | if( n==0 )
|
---|
| 1371 | {
|
---|
| 1372 | return;
|
---|
| 1373 | }
|
---|
| 1374 |
|
---|
| 1375 | //
|
---|
| 1376 | // Allocate
|
---|
| 1377 | //
|
---|
| 1378 | kdtreeallocdatasetindependent(kdt, nx, ny);
|
---|
| 1379 | kdtreeallocdatasetdependent(kdt, n, nx, ny);
|
---|
| 1380 |
|
---|
| 1381 | //
|
---|
| 1382 | // Initial fill
|
---|
| 1383 | //
|
---|
| 1384 | for(i=0; i<=n-1; i++)
|
---|
| 1385 | {
|
---|
| 1386 | for(i_=0; i_<=nx-1;i_++)
|
---|
| 1387 | {
|
---|
| 1388 | kdt.xy[i,i_] = xy[i,i_];
|
---|
| 1389 | }
|
---|
| 1390 | i1_ = (0) - (nx);
|
---|
| 1391 | for(i_=nx; i_<=2*nx+ny-1;i_++)
|
---|
| 1392 | {
|
---|
| 1393 | kdt.xy[i,i_] = xy[i,i_+i1_];
|
---|
| 1394 | }
|
---|
| 1395 | kdt.tags[i] = tags[i];
|
---|
| 1396 | }
|
---|
| 1397 |
|
---|
| 1398 | //
|
---|
| 1399 | // Determine bounding box
|
---|
| 1400 | //
|
---|
| 1401 | for(i_=0; i_<=nx-1;i_++)
|
---|
| 1402 | {
|
---|
| 1403 | kdt.boxmin[i_] = kdt.xy[0,i_];
|
---|
| 1404 | }
|
---|
| 1405 | for(i_=0; i_<=nx-1;i_++)
|
---|
| 1406 | {
|
---|
| 1407 | kdt.boxmax[i_] = kdt.xy[0,i_];
|
---|
| 1408 | }
|
---|
| 1409 | for(i=1; i<=n-1; i++)
|
---|
| 1410 | {
|
---|
| 1411 | for(j=0; j<=nx-1; j++)
|
---|
| 1412 | {
|
---|
| 1413 | kdt.boxmin[j] = Math.Min(kdt.boxmin[j], kdt.xy[i,j]);
|
---|
| 1414 | kdt.boxmax[j] = Math.Max(kdt.boxmax[j], kdt.xy[i,j]);
|
---|
| 1415 | }
|
---|
| 1416 | }
|
---|
| 1417 |
|
---|
| 1418 | //
|
---|
| 1419 | // prepare tree structure
|
---|
| 1420 | // * MaxNodes=N because we guarantee no trivial splits, i.e.
|
---|
| 1421 | // every split will generate two non-empty boxes
|
---|
| 1422 | //
|
---|
| 1423 | maxnodes = n;
|
---|
| 1424 | kdt.nodes = new int[splitnodesize*2*maxnodes];
|
---|
| 1425 | kdt.splits = new double[2*maxnodes];
|
---|
| 1426 | nodesoffs = 0;
|
---|
| 1427 | splitsoffs = 0;
|
---|
| 1428 | for(i_=0; i_<=nx-1;i_++)
|
---|
| 1429 | {
|
---|
| 1430 | kdt.curboxmin[i_] = kdt.boxmin[i_];
|
---|
| 1431 | }
|
---|
| 1432 | for(i_=0; i_<=nx-1;i_++)
|
---|
| 1433 | {
|
---|
| 1434 | kdt.curboxmax[i_] = kdt.boxmax[i_];
|
---|
| 1435 | }
|
---|
| 1436 | kdtreegeneratetreerec(kdt, ref nodesoffs, ref splitsoffs, 0, n, 8);
|
---|
| 1437 | }
|
---|
| 1438 |
|
---|
| 1439 |
|
---|
| 1440 | /*************************************************************************
|
---|
| 1441 | K-NN query: K nearest neighbors
|
---|
| 1442 |
|
---|
| 1443 | INPUT PARAMETERS
|
---|
| 1444 | KDT - KD-tree
|
---|
| 1445 | X - point, array[0..NX-1].
|
---|
| 1446 | K - number of neighbors to return, K>=1
|
---|
| 1447 | SelfMatch - whether self-matches are allowed:
|
---|
| 1448 | * if True, nearest neighbor may be the point itself
|
---|
| 1449 | (if it exists in original dataset)
|
---|
| 1450 | * if False, then only points with non-zero distance
|
---|
| 1451 | are returned
|
---|
| 1452 | * if not given, considered True
|
---|
| 1453 |
|
---|
| 1454 | RESULT
|
---|
| 1455 | number of actual neighbors found (either K or N, if K>N).
|
---|
| 1456 |
|
---|
| 1457 | This subroutine performs query and stores its result in the internal
|
---|
| 1458 | structures of the KD-tree. You can use following subroutines to obtain
|
---|
| 1459 | these results:
|
---|
| 1460 | * KDTreeQueryResultsX() to get X-values
|
---|
| 1461 | * KDTreeQueryResultsXY() to get X- and Y-values
|
---|
| 1462 | * KDTreeQueryResultsTags() to get tag values
|
---|
| 1463 | * KDTreeQueryResultsDistances() to get distances
|
---|
| 1464 |
|
---|
| 1465 | -- ALGLIB --
|
---|
| 1466 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 1467 | *************************************************************************/
|
---|
| 1468 | public static int kdtreequeryknn(kdtree kdt,
|
---|
| 1469 | double[] x,
|
---|
| 1470 | int k,
|
---|
| 1471 | bool selfmatch)
|
---|
| 1472 | {
|
---|
| 1473 | int result = 0;
|
---|
| 1474 |
|
---|
| 1475 | alglib.ap.assert(k>=1, "KDTreeQueryKNN: K<1!");
|
---|
| 1476 | alglib.ap.assert(alglib.ap.len(x)>=kdt.nx, "KDTreeQueryKNN: Length(X)<NX!");
|
---|
| 1477 | alglib.ap.assert(apserv.isfinitevector(x, kdt.nx), "KDTreeQueryKNN: X contains infinite or NaN values!");
|
---|
| 1478 | result = kdtreequeryaknn(kdt, x, k, selfmatch, 0.0);
|
---|
| 1479 | return result;
|
---|
| 1480 | }
|
---|
| 1481 |
|
---|
| 1482 |
|
---|
| 1483 | /*************************************************************************
|
---|
| 1484 | R-NN query: all points within R-sphere centered at X
|
---|
| 1485 |
|
---|
| 1486 | INPUT PARAMETERS
|
---|
| 1487 | KDT - KD-tree
|
---|
| 1488 | X - point, array[0..NX-1].
|
---|
| 1489 | R - radius of sphere (in corresponding norm), R>0
|
---|
| 1490 | SelfMatch - whether self-matches are allowed:
|
---|
| 1491 | * if True, nearest neighbor may be the point itself
|
---|
| 1492 | (if it exists in original dataset)
|
---|
| 1493 | * if False, then only points with non-zero distance
|
---|
| 1494 | are returned
|
---|
| 1495 | * if not given, considered True
|
---|
| 1496 |
|
---|
| 1497 | RESULT
|
---|
| 1498 | number of neighbors found, >=0
|
---|
| 1499 |
|
---|
| 1500 | This subroutine performs query and stores its result in the internal
|
---|
| 1501 | structures of the KD-tree. You can use following subroutines to obtain
|
---|
| 1502 | actual results:
|
---|
| 1503 | * KDTreeQueryResultsX() to get X-values
|
---|
| 1504 | * KDTreeQueryResultsXY() to get X- and Y-values
|
---|
| 1505 | * KDTreeQueryResultsTags() to get tag values
|
---|
| 1506 | * KDTreeQueryResultsDistances() to get distances
|
---|
| 1507 |
|
---|
| 1508 | -- ALGLIB --
|
---|
| 1509 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 1510 | *************************************************************************/
|
---|
| 1511 | public static int kdtreequeryrnn(kdtree kdt,
|
---|
| 1512 | double[] x,
|
---|
| 1513 | double r,
|
---|
| 1514 | bool selfmatch)
|
---|
| 1515 | {
|
---|
| 1516 | int result = 0;
|
---|
| 1517 | int i = 0;
|
---|
| 1518 | int j = 0;
|
---|
| 1519 |
|
---|
| 1520 | alglib.ap.assert((double)(r)>(double)(0), "KDTreeQueryRNN: incorrect R!");
|
---|
| 1521 | alglib.ap.assert(alglib.ap.len(x)>=kdt.nx, "KDTreeQueryRNN: Length(X)<NX!");
|
---|
| 1522 | alglib.ap.assert(apserv.isfinitevector(x, kdt.nx), "KDTreeQueryRNN: X contains infinite or NaN values!");
|
---|
| 1523 |
|
---|
| 1524 | //
|
---|
| 1525 | // Handle special case: KDT.N=0
|
---|
| 1526 | //
|
---|
| 1527 | if( kdt.n==0 )
|
---|
| 1528 | {
|
---|
| 1529 | kdt.kcur = 0;
|
---|
| 1530 | result = 0;
|
---|
| 1531 | return result;
|
---|
| 1532 | }
|
---|
| 1533 |
|
---|
| 1534 | //
|
---|
| 1535 | // Prepare parameters
|
---|
| 1536 | //
|
---|
| 1537 | kdt.kneeded = 0;
|
---|
| 1538 | if( kdt.normtype!=2 )
|
---|
| 1539 | {
|
---|
| 1540 | kdt.rneeded = r;
|
---|
| 1541 | }
|
---|
| 1542 | else
|
---|
| 1543 | {
|
---|
| 1544 | kdt.rneeded = math.sqr(r);
|
---|
| 1545 | }
|
---|
| 1546 | kdt.selfmatch = selfmatch;
|
---|
| 1547 | kdt.approxf = 1;
|
---|
| 1548 | kdt.kcur = 0;
|
---|
| 1549 |
|
---|
| 1550 | //
|
---|
| 1551 | // calculate distance from point to current bounding box
|
---|
| 1552 | //
|
---|
| 1553 | kdtreeinitbox(kdt, x);
|
---|
| 1554 |
|
---|
| 1555 | //
|
---|
| 1556 | // call recursive search
|
---|
| 1557 | // results are returned as heap
|
---|
| 1558 | //
|
---|
| 1559 | kdtreequerynnrec(kdt, 0);
|
---|
| 1560 |
|
---|
| 1561 | //
|
---|
| 1562 | // pop from heap to generate ordered representation
|
---|
| 1563 | //
|
---|
| 1564 | // last element is not pop'ed because it is already in
|
---|
| 1565 | // its place
|
---|
| 1566 | //
|
---|
| 1567 | result = kdt.kcur;
|
---|
| 1568 | j = kdt.kcur;
|
---|
| 1569 | for(i=kdt.kcur; i>=2; i--)
|
---|
| 1570 | {
|
---|
| 1571 | tsort.tagheappopi(ref kdt.r, ref kdt.idx, ref j);
|
---|
| 1572 | }
|
---|
| 1573 | return result;
|
---|
| 1574 | }
|
---|
| 1575 |
|
---|
| 1576 |
|
---|
| 1577 | /*************************************************************************
|
---|
| 1578 | K-NN query: approximate K nearest neighbors
|
---|
| 1579 |
|
---|
| 1580 | INPUT PARAMETERS
|
---|
| 1581 | KDT - KD-tree
|
---|
| 1582 | X - point, array[0..NX-1].
|
---|
| 1583 | K - number of neighbors to return, K>=1
|
---|
| 1584 | SelfMatch - whether self-matches are allowed:
|
---|
| 1585 | * if True, nearest neighbor may be the point itself
|
---|
| 1586 | (if it exists in original dataset)
|
---|
| 1587 | * if False, then only points with non-zero distance
|
---|
| 1588 | are returned
|
---|
| 1589 | * if not given, considered True
|
---|
| 1590 | Eps - approximation factor, Eps>=0. eps-approximate nearest
|
---|
| 1591 | neighbor is a neighbor whose distance from X is at
|
---|
| 1592 | most (1+eps) times distance of true nearest neighbor.
|
---|
| 1593 |
|
---|
| 1594 | RESULT
|
---|
| 1595 | number of actual neighbors found (either K or N, if K>N).
|
---|
| 1596 |
|
---|
| 1597 | NOTES
|
---|
| 1598 | significant performance gain may be achieved only when Eps is is on
|
---|
| 1599 | the order of magnitude of 1 or larger.
|
---|
| 1600 |
|
---|
| 1601 | This subroutine performs query and stores its result in the internal
|
---|
| 1602 | structures of the KD-tree. You can use following subroutines to obtain
|
---|
| 1603 | these results:
|
---|
| 1604 | * KDTreeQueryResultsX() to get X-values
|
---|
| 1605 | * KDTreeQueryResultsXY() to get X- and Y-values
|
---|
| 1606 | * KDTreeQueryResultsTags() to get tag values
|
---|
| 1607 | * KDTreeQueryResultsDistances() to get distances
|
---|
| 1608 |
|
---|
| 1609 | -- ALGLIB --
|
---|
| 1610 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 1611 | *************************************************************************/
|
---|
| 1612 | public static int kdtreequeryaknn(kdtree kdt,
|
---|
| 1613 | double[] x,
|
---|
| 1614 | int k,
|
---|
| 1615 | bool selfmatch,
|
---|
| 1616 | double eps)
|
---|
| 1617 | {
|
---|
| 1618 | int result = 0;
|
---|
| 1619 | int i = 0;
|
---|
| 1620 | int j = 0;
|
---|
| 1621 |
|
---|
| 1622 | alglib.ap.assert(k>0, "KDTreeQueryAKNN: incorrect K!");
|
---|
| 1623 | alglib.ap.assert((double)(eps)>=(double)(0), "KDTreeQueryAKNN: incorrect Eps!");
|
---|
| 1624 | alglib.ap.assert(alglib.ap.len(x)>=kdt.nx, "KDTreeQueryAKNN: Length(X)<NX!");
|
---|
| 1625 | alglib.ap.assert(apserv.isfinitevector(x, kdt.nx), "KDTreeQueryAKNN: X contains infinite or NaN values!");
|
---|
| 1626 |
|
---|
| 1627 | //
|
---|
| 1628 | // Handle special case: KDT.N=0
|
---|
| 1629 | //
|
---|
| 1630 | if( kdt.n==0 )
|
---|
| 1631 | {
|
---|
| 1632 | kdt.kcur = 0;
|
---|
| 1633 | result = 0;
|
---|
| 1634 | return result;
|
---|
| 1635 | }
|
---|
| 1636 |
|
---|
| 1637 | //
|
---|
| 1638 | // Prepare parameters
|
---|
| 1639 | //
|
---|
| 1640 | k = Math.Min(k, kdt.n);
|
---|
| 1641 | kdt.kneeded = k;
|
---|
| 1642 | kdt.rneeded = 0;
|
---|
| 1643 | kdt.selfmatch = selfmatch;
|
---|
| 1644 | if( kdt.normtype==2 )
|
---|
| 1645 | {
|
---|
| 1646 | kdt.approxf = 1/math.sqr(1+eps);
|
---|
| 1647 | }
|
---|
| 1648 | else
|
---|
| 1649 | {
|
---|
| 1650 | kdt.approxf = 1/(1+eps);
|
---|
| 1651 | }
|
---|
| 1652 | kdt.kcur = 0;
|
---|
| 1653 |
|
---|
| 1654 | //
|
---|
| 1655 | // calculate distance from point to current bounding box
|
---|
| 1656 | //
|
---|
| 1657 | kdtreeinitbox(kdt, x);
|
---|
| 1658 |
|
---|
| 1659 | //
|
---|
| 1660 | // call recursive search
|
---|
| 1661 | // results are returned as heap
|
---|
| 1662 | //
|
---|
| 1663 | kdtreequerynnrec(kdt, 0);
|
---|
| 1664 |
|
---|
| 1665 | //
|
---|
| 1666 | // pop from heap to generate ordered representation
|
---|
| 1667 | //
|
---|
| 1668 | // last element is non pop'ed because it is already in
|
---|
| 1669 | // its place
|
---|
| 1670 | //
|
---|
| 1671 | result = kdt.kcur;
|
---|
| 1672 | j = kdt.kcur;
|
---|
| 1673 | for(i=kdt.kcur; i>=2; i--)
|
---|
| 1674 | {
|
---|
| 1675 | tsort.tagheappopi(ref kdt.r, ref kdt.idx, ref j);
|
---|
| 1676 | }
|
---|
| 1677 | return result;
|
---|
| 1678 | }
|
---|
| 1679 |
|
---|
| 1680 |
|
---|
| 1681 | /*************************************************************************
|
---|
| 1682 | X-values from last query
|
---|
| 1683 |
|
---|
| 1684 | INPUT PARAMETERS
|
---|
| 1685 | KDT - KD-tree
|
---|
| 1686 | X - possibly pre-allocated buffer. If X is too small to store
|
---|
| 1687 | result, it is resized. If size(X) is enough to store
|
---|
| 1688 | result, it is left unchanged.
|
---|
| 1689 |
|
---|
| 1690 | OUTPUT PARAMETERS
|
---|
| 1691 | X - rows are filled with X-values
|
---|
| 1692 |
|
---|
| 1693 | NOTES
|
---|
| 1694 | 1. points are ordered by distance from the query point (first = closest)
|
---|
| 1695 | 2. if XY is larger than required to store result, only leading part will
|
---|
| 1696 | be overwritten; trailing part will be left unchanged. So if on input
|
---|
| 1697 | XY = [[A,B],[C,D]], and result is [1,2], then on exit we will get
|
---|
| 1698 | XY = [[1,2],[C,D]]. This is done purposely to increase performance; if
|
---|
| 1699 | you want function to resize array according to result size, use
|
---|
| 1700 | function with same name and suffix 'I'.
|
---|
| 1701 |
|
---|
| 1702 | SEE ALSO
|
---|
| 1703 | * KDTreeQueryResultsXY() X- and Y-values
|
---|
| 1704 | * KDTreeQueryResultsTags() tag values
|
---|
| 1705 | * KDTreeQueryResultsDistances() distances
|
---|
| 1706 |
|
---|
| 1707 | -- ALGLIB --
|
---|
| 1708 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 1709 | *************************************************************************/
|
---|
| 1710 | public static void kdtreequeryresultsx(kdtree kdt,
|
---|
| 1711 | ref double[,] x)
|
---|
| 1712 | {
|
---|
| 1713 | int i = 0;
|
---|
| 1714 | int k = 0;
|
---|
| 1715 | int i_ = 0;
|
---|
| 1716 | int i1_ = 0;
|
---|
| 1717 |
|
---|
| 1718 | if( kdt.kcur==0 )
|
---|
| 1719 | {
|
---|
| 1720 | return;
|
---|
| 1721 | }
|
---|
| 1722 | if( alglib.ap.rows(x)<kdt.kcur || alglib.ap.cols(x)<kdt.nx )
|
---|
| 1723 | {
|
---|
| 1724 | x = new double[kdt.kcur, kdt.nx];
|
---|
| 1725 | }
|
---|
| 1726 | k = kdt.kcur;
|
---|
| 1727 | for(i=0; i<=k-1; i++)
|
---|
| 1728 | {
|
---|
| 1729 | i1_ = (kdt.nx) - (0);
|
---|
| 1730 | for(i_=0; i_<=kdt.nx-1;i_++)
|
---|
| 1731 | {
|
---|
| 1732 | x[i,i_] = kdt.xy[kdt.idx[i],i_+i1_];
|
---|
| 1733 | }
|
---|
| 1734 | }
|
---|
| 1735 | }
|
---|
| 1736 |
|
---|
| 1737 |
|
---|
| 1738 | /*************************************************************************
|
---|
| 1739 | X- and Y-values from last query
|
---|
| 1740 |
|
---|
| 1741 | INPUT PARAMETERS
|
---|
| 1742 | KDT - KD-tree
|
---|
| 1743 | XY - possibly pre-allocated buffer. If XY is too small to store
|
---|
| 1744 | result, it is resized. If size(XY) is enough to store
|
---|
| 1745 | result, it is left unchanged.
|
---|
| 1746 |
|
---|
| 1747 | OUTPUT PARAMETERS
|
---|
| 1748 | XY - rows are filled with points: first NX columns with
|
---|
| 1749 | X-values, next NY columns - with Y-values.
|
---|
| 1750 |
|
---|
| 1751 | NOTES
|
---|
| 1752 | 1. points are ordered by distance from the query point (first = closest)
|
---|
| 1753 | 2. if XY is larger than required to store result, only leading part will
|
---|
| 1754 | be overwritten; trailing part will be left unchanged. So if on input
|
---|
| 1755 | XY = [[A,B],[C,D]], and result is [1,2], then on exit we will get
|
---|
| 1756 | XY = [[1,2],[C,D]]. This is done purposely to increase performance; if
|
---|
| 1757 | you want function to resize array according to result size, use
|
---|
| 1758 | function with same name and suffix 'I'.
|
---|
| 1759 |
|
---|
| 1760 | SEE ALSO
|
---|
| 1761 | * KDTreeQueryResultsX() X-values
|
---|
| 1762 | * KDTreeQueryResultsTags() tag values
|
---|
| 1763 | * KDTreeQueryResultsDistances() distances
|
---|
| 1764 |
|
---|
| 1765 | -- ALGLIB --
|
---|
| 1766 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 1767 | *************************************************************************/
|
---|
| 1768 | public static void kdtreequeryresultsxy(kdtree kdt,
|
---|
| 1769 | ref double[,] xy)
|
---|
| 1770 | {
|
---|
| 1771 | int i = 0;
|
---|
| 1772 | int k = 0;
|
---|
| 1773 | int i_ = 0;
|
---|
| 1774 | int i1_ = 0;
|
---|
| 1775 |
|
---|
| 1776 | if( kdt.kcur==0 )
|
---|
| 1777 | {
|
---|
| 1778 | return;
|
---|
| 1779 | }
|
---|
| 1780 | if( alglib.ap.rows(xy)<kdt.kcur || alglib.ap.cols(xy)<kdt.nx+kdt.ny )
|
---|
| 1781 | {
|
---|
| 1782 | xy = new double[kdt.kcur, kdt.nx+kdt.ny];
|
---|
| 1783 | }
|
---|
| 1784 | k = kdt.kcur;
|
---|
| 1785 | for(i=0; i<=k-1; i++)
|
---|
| 1786 | {
|
---|
| 1787 | i1_ = (kdt.nx) - (0);
|
---|
| 1788 | for(i_=0; i_<=kdt.nx+kdt.ny-1;i_++)
|
---|
| 1789 | {
|
---|
| 1790 | xy[i,i_] = kdt.xy[kdt.idx[i],i_+i1_];
|
---|
| 1791 | }
|
---|
| 1792 | }
|
---|
| 1793 | }
|
---|
| 1794 |
|
---|
| 1795 |
|
---|
| 1796 | /*************************************************************************
|
---|
| 1797 | Tags from last query
|
---|
| 1798 |
|
---|
| 1799 | INPUT PARAMETERS
|
---|
| 1800 | KDT - KD-tree
|
---|
| 1801 | Tags - possibly pre-allocated buffer. If X is too small to store
|
---|
| 1802 | result, it is resized. If size(X) is enough to store
|
---|
| 1803 | result, it is left unchanged.
|
---|
| 1804 |
|
---|
| 1805 | OUTPUT PARAMETERS
|
---|
| 1806 | Tags - filled with tags associated with points,
|
---|
| 1807 | or, when no tags were supplied, with zeros
|
---|
| 1808 |
|
---|
| 1809 | NOTES
|
---|
| 1810 | 1. points are ordered by distance from the query point (first = closest)
|
---|
| 1811 | 2. if XY is larger than required to store result, only leading part will
|
---|
| 1812 | be overwritten; trailing part will be left unchanged. So if on input
|
---|
| 1813 | XY = [[A,B],[C,D]], and result is [1,2], then on exit we will get
|
---|
| 1814 | XY = [[1,2],[C,D]]. This is done purposely to increase performance; if
|
---|
| 1815 | you want function to resize array according to result size, use
|
---|
| 1816 | function with same name and suffix 'I'.
|
---|
| 1817 |
|
---|
| 1818 | SEE ALSO
|
---|
| 1819 | * KDTreeQueryResultsX() X-values
|
---|
| 1820 | * KDTreeQueryResultsXY() X- and Y-values
|
---|
| 1821 | * KDTreeQueryResultsDistances() distances
|
---|
| 1822 |
|
---|
| 1823 | -- ALGLIB --
|
---|
| 1824 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 1825 | *************************************************************************/
|
---|
| 1826 | public static void kdtreequeryresultstags(kdtree kdt,
|
---|
| 1827 | ref int[] tags)
|
---|
| 1828 | {
|
---|
| 1829 | int i = 0;
|
---|
| 1830 | int k = 0;
|
---|
| 1831 |
|
---|
| 1832 | if( kdt.kcur==0 )
|
---|
| 1833 | {
|
---|
| 1834 | return;
|
---|
| 1835 | }
|
---|
| 1836 | if( alglib.ap.len(tags)<kdt.kcur )
|
---|
| 1837 | {
|
---|
| 1838 | tags = new int[kdt.kcur];
|
---|
| 1839 | }
|
---|
| 1840 | k = kdt.kcur;
|
---|
| 1841 | for(i=0; i<=k-1; i++)
|
---|
| 1842 | {
|
---|
| 1843 | tags[i] = kdt.tags[kdt.idx[i]];
|
---|
| 1844 | }
|
---|
| 1845 | }
|
---|
| 1846 |
|
---|
| 1847 |
|
---|
| 1848 | /*************************************************************************
|
---|
| 1849 | Distances from last query
|
---|
| 1850 |
|
---|
| 1851 | INPUT PARAMETERS
|
---|
| 1852 | KDT - KD-tree
|
---|
| 1853 | R - possibly pre-allocated buffer. If X is too small to store
|
---|
| 1854 | result, it is resized. If size(X) is enough to store
|
---|
| 1855 | result, it is left unchanged.
|
---|
| 1856 |
|
---|
| 1857 | OUTPUT PARAMETERS
|
---|
| 1858 | R - filled with distances (in corresponding norm)
|
---|
| 1859 |
|
---|
| 1860 | NOTES
|
---|
| 1861 | 1. points are ordered by distance from the query point (first = closest)
|
---|
| 1862 | 2. if XY is larger than required to store result, only leading part will
|
---|
| 1863 | be overwritten; trailing part will be left unchanged. So if on input
|
---|
| 1864 | XY = [[A,B],[C,D]], and result is [1,2], then on exit we will get
|
---|
| 1865 | XY = [[1,2],[C,D]]. This is done purposely to increase performance; if
|
---|
| 1866 | you want function to resize array according to result size, use
|
---|
| 1867 | function with same name and suffix 'I'.
|
---|
| 1868 |
|
---|
| 1869 | SEE ALSO
|
---|
| 1870 | * KDTreeQueryResultsX() X-values
|
---|
| 1871 | * KDTreeQueryResultsXY() X- and Y-values
|
---|
| 1872 | * KDTreeQueryResultsTags() tag values
|
---|
| 1873 |
|
---|
| 1874 | -- ALGLIB --
|
---|
| 1875 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 1876 | *************************************************************************/
|
---|
| 1877 | public static void kdtreequeryresultsdistances(kdtree kdt,
|
---|
| 1878 | ref double[] r)
|
---|
| 1879 | {
|
---|
| 1880 | int i = 0;
|
---|
| 1881 | int k = 0;
|
---|
| 1882 |
|
---|
| 1883 | if( kdt.kcur==0 )
|
---|
| 1884 | {
|
---|
| 1885 | return;
|
---|
| 1886 | }
|
---|
| 1887 | if( alglib.ap.len(r)<kdt.kcur )
|
---|
| 1888 | {
|
---|
| 1889 | r = new double[kdt.kcur];
|
---|
| 1890 | }
|
---|
| 1891 | k = kdt.kcur;
|
---|
| 1892 |
|
---|
| 1893 | //
|
---|
| 1894 | // unload norms
|
---|
| 1895 | //
|
---|
| 1896 | // Abs() call is used to handle cases with negative norms
|
---|
| 1897 | // (generated during KFN requests)
|
---|
| 1898 | //
|
---|
| 1899 | if( kdt.normtype==0 )
|
---|
| 1900 | {
|
---|
| 1901 | for(i=0; i<=k-1; i++)
|
---|
| 1902 | {
|
---|
| 1903 | r[i] = Math.Abs(kdt.r[i]);
|
---|
| 1904 | }
|
---|
| 1905 | }
|
---|
| 1906 | if( kdt.normtype==1 )
|
---|
| 1907 | {
|
---|
| 1908 | for(i=0; i<=k-1; i++)
|
---|
| 1909 | {
|
---|
| 1910 | r[i] = Math.Abs(kdt.r[i]);
|
---|
| 1911 | }
|
---|
| 1912 | }
|
---|
| 1913 | if( kdt.normtype==2 )
|
---|
| 1914 | {
|
---|
| 1915 | for(i=0; i<=k-1; i++)
|
---|
| 1916 | {
|
---|
| 1917 | r[i] = Math.Sqrt(Math.Abs(kdt.r[i]));
|
---|
| 1918 | }
|
---|
| 1919 | }
|
---|
| 1920 | }
|
---|
| 1921 |
|
---|
| 1922 |
|
---|
| 1923 | /*************************************************************************
|
---|
| 1924 | X-values from last query; 'interactive' variant for languages like Python
|
---|
| 1925 | which support constructs like "X = KDTreeQueryResultsXI(KDT)" and
|
---|
| 1926 | interactive mode of interpreter.
|
---|
| 1927 |
|
---|
| 1928 | This function allocates new array on each call, so it is significantly
|
---|
| 1929 | slower than its 'non-interactive' counterpart, but it is more convenient
|
---|
| 1930 | when you call it from command line.
|
---|
| 1931 |
|
---|
| 1932 | -- ALGLIB --
|
---|
| 1933 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 1934 | *************************************************************************/
|
---|
| 1935 | public static void kdtreequeryresultsxi(kdtree kdt,
|
---|
| 1936 | ref double[,] x)
|
---|
| 1937 | {
|
---|
| 1938 | x = new double[0,0];
|
---|
| 1939 |
|
---|
| 1940 | kdtreequeryresultsx(kdt, ref x);
|
---|
| 1941 | }
|
---|
| 1942 |
|
---|
| 1943 |
|
---|
| 1944 | /*************************************************************************
|
---|
| 1945 | XY-values from last query; 'interactive' variant for languages like Python
|
---|
| 1946 | which support constructs like "XY = KDTreeQueryResultsXYI(KDT)" and
|
---|
| 1947 | interactive mode of interpreter.
|
---|
| 1948 |
|
---|
| 1949 | This function allocates new array on each call, so it is significantly
|
---|
| 1950 | slower than its 'non-interactive' counterpart, but it is more convenient
|
---|
| 1951 | when you call it from command line.
|
---|
| 1952 |
|
---|
| 1953 | -- ALGLIB --
|
---|
| 1954 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 1955 | *************************************************************************/
|
---|
| 1956 | public static void kdtreequeryresultsxyi(kdtree kdt,
|
---|
| 1957 | ref double[,] xy)
|
---|
| 1958 | {
|
---|
| 1959 | xy = new double[0,0];
|
---|
| 1960 |
|
---|
| 1961 | kdtreequeryresultsxy(kdt, ref xy);
|
---|
| 1962 | }
|
---|
| 1963 |
|
---|
| 1964 |
|
---|
| 1965 | /*************************************************************************
|
---|
| 1966 | Tags from last query; 'interactive' variant for languages like Python
|
---|
| 1967 | which support constructs like "Tags = KDTreeQueryResultsTagsI(KDT)" and
|
---|
| 1968 | interactive mode of interpreter.
|
---|
| 1969 |
|
---|
| 1970 | This function allocates new array on each call, so it is significantly
|
---|
| 1971 | slower than its 'non-interactive' counterpart, but it is more convenient
|
---|
| 1972 | when you call it from command line.
|
---|
| 1973 |
|
---|
| 1974 | -- ALGLIB --
|
---|
| 1975 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 1976 | *************************************************************************/
|
---|
| 1977 | public static void kdtreequeryresultstagsi(kdtree kdt,
|
---|
| 1978 | ref int[] tags)
|
---|
| 1979 | {
|
---|
| 1980 | tags = new int[0];
|
---|
| 1981 |
|
---|
| 1982 | kdtreequeryresultstags(kdt, ref tags);
|
---|
| 1983 | }
|
---|
| 1984 |
|
---|
| 1985 |
|
---|
| 1986 | /*************************************************************************
|
---|
| 1987 | Distances from last query; 'interactive' variant for languages like Python
|
---|
| 1988 | which support constructs like "R = KDTreeQueryResultsDistancesI(KDT)"
|
---|
| 1989 | and interactive mode of interpreter.
|
---|
| 1990 |
|
---|
| 1991 | This function allocates new array on each call, so it is significantly
|
---|
| 1992 | slower than its 'non-interactive' counterpart, but it is more convenient
|
---|
| 1993 | when you call it from command line.
|
---|
| 1994 |
|
---|
| 1995 | -- ALGLIB --
|
---|
| 1996 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 1997 | *************************************************************************/
|
---|
| 1998 | public static void kdtreequeryresultsdistancesi(kdtree kdt,
|
---|
| 1999 | ref double[] r)
|
---|
| 2000 | {
|
---|
| 2001 | r = new double[0];
|
---|
| 2002 |
|
---|
| 2003 | kdtreequeryresultsdistances(kdt, ref r);
|
---|
| 2004 | }
|
---|
| 2005 |
|
---|
| 2006 |
|
---|
| 2007 | /*************************************************************************
|
---|
| 2008 | Serializer: allocation
|
---|
| 2009 |
|
---|
| 2010 | -- ALGLIB --
|
---|
| 2011 | Copyright 14.03.2011 by Bochkanov Sergey
|
---|
| 2012 | *************************************************************************/
|
---|
| 2013 | public static void kdtreealloc(alglib.serializer s,
|
---|
| 2014 | kdtree tree)
|
---|
| 2015 | {
|
---|
| 2016 |
|
---|
| 2017 | //
|
---|
| 2018 | // Header
|
---|
| 2019 | //
|
---|
| 2020 | s.alloc_entry();
|
---|
| 2021 | s.alloc_entry();
|
---|
| 2022 |
|
---|
| 2023 | //
|
---|
| 2024 | // Data
|
---|
| 2025 | //
|
---|
| 2026 | s.alloc_entry();
|
---|
| 2027 | s.alloc_entry();
|
---|
| 2028 | s.alloc_entry();
|
---|
| 2029 | s.alloc_entry();
|
---|
| 2030 | apserv.allocrealmatrix(s, tree.xy, -1, -1);
|
---|
| 2031 | apserv.allocintegerarray(s, tree.tags, -1);
|
---|
| 2032 | apserv.allocrealarray(s, tree.boxmin, -1);
|
---|
| 2033 | apserv.allocrealarray(s, tree.boxmax, -1);
|
---|
| 2034 | apserv.allocintegerarray(s, tree.nodes, -1);
|
---|
| 2035 | apserv.allocrealarray(s, tree.splits, -1);
|
---|
| 2036 | }
|
---|
| 2037 |
|
---|
| 2038 |
|
---|
| 2039 | /*************************************************************************
|
---|
| 2040 | Serializer: serialization
|
---|
| 2041 |
|
---|
| 2042 | -- ALGLIB --
|
---|
| 2043 | Copyright 14.03.2011 by Bochkanov Sergey
|
---|
| 2044 | *************************************************************************/
|
---|
| 2045 | public static void kdtreeserialize(alglib.serializer s,
|
---|
| 2046 | kdtree tree)
|
---|
| 2047 | {
|
---|
| 2048 |
|
---|
| 2049 | //
|
---|
| 2050 | // Header
|
---|
| 2051 | //
|
---|
| 2052 | s.serialize_int(scodes.getkdtreeserializationcode());
|
---|
| 2053 | s.serialize_int(kdtreefirstversion);
|
---|
| 2054 |
|
---|
| 2055 | //
|
---|
| 2056 | // Data
|
---|
| 2057 | //
|
---|
| 2058 | s.serialize_int(tree.n);
|
---|
| 2059 | s.serialize_int(tree.nx);
|
---|
| 2060 | s.serialize_int(tree.ny);
|
---|
| 2061 | s.serialize_int(tree.normtype);
|
---|
| 2062 | apserv.serializerealmatrix(s, tree.xy, -1, -1);
|
---|
| 2063 | apserv.serializeintegerarray(s, tree.tags, -1);
|
---|
| 2064 | apserv.serializerealarray(s, tree.boxmin, -1);
|
---|
| 2065 | apserv.serializerealarray(s, tree.boxmax, -1);
|
---|
| 2066 | apserv.serializeintegerarray(s, tree.nodes, -1);
|
---|
| 2067 | apserv.serializerealarray(s, tree.splits, -1);
|
---|
| 2068 | }
|
---|
| 2069 |
|
---|
| 2070 |
|
---|
| 2071 | /*************************************************************************
|
---|
| 2072 | Serializer: unserialization
|
---|
| 2073 |
|
---|
| 2074 | -- ALGLIB --
|
---|
| 2075 | Copyright 14.03.2011 by Bochkanov Sergey
|
---|
| 2076 | *************************************************************************/
|
---|
| 2077 | public static void kdtreeunserialize(alglib.serializer s,
|
---|
| 2078 | kdtree tree)
|
---|
| 2079 | {
|
---|
| 2080 | int i0 = 0;
|
---|
| 2081 | int i1 = 0;
|
---|
| 2082 |
|
---|
| 2083 |
|
---|
| 2084 | //
|
---|
| 2085 | // check correctness of header
|
---|
| 2086 | //
|
---|
| 2087 | i0 = s.unserialize_int();
|
---|
| 2088 | alglib.ap.assert(i0==scodes.getkdtreeserializationcode(), "KDTreeUnserialize: stream header corrupted");
|
---|
| 2089 | i1 = s.unserialize_int();
|
---|
| 2090 | alglib.ap.assert(i1==kdtreefirstversion, "KDTreeUnserialize: stream header corrupted");
|
---|
| 2091 |
|
---|
| 2092 | //
|
---|
| 2093 | // Unserialize data
|
---|
| 2094 | //
|
---|
| 2095 | tree.n = s.unserialize_int();
|
---|
| 2096 | tree.nx = s.unserialize_int();
|
---|
| 2097 | tree.ny = s.unserialize_int();
|
---|
| 2098 | tree.normtype = s.unserialize_int();
|
---|
| 2099 | apserv.unserializerealmatrix(s, ref tree.xy);
|
---|
| 2100 | apserv.unserializeintegerarray(s, ref tree.tags);
|
---|
| 2101 | apserv.unserializerealarray(s, ref tree.boxmin);
|
---|
| 2102 | apserv.unserializerealarray(s, ref tree.boxmax);
|
---|
| 2103 | apserv.unserializeintegerarray(s, ref tree.nodes);
|
---|
| 2104 | apserv.unserializerealarray(s, ref tree.splits);
|
---|
| 2105 | kdtreealloctemporaries(tree, tree.n, tree.nx, tree.ny);
|
---|
| 2106 | }
|
---|
| 2107 |
|
---|
| 2108 |
|
---|
| 2109 | /*************************************************************************
|
---|
| 2110 | Rearranges nodes [I1,I2) using partition in D-th dimension with S as threshold.
|
---|
| 2111 | Returns split position I3: [I1,I3) and [I3,I2) are created as result.
|
---|
| 2112 |
|
---|
| 2113 | This subroutine doesn't create tree structures, just rearranges nodes.
|
---|
| 2114 | *************************************************************************/
|
---|
| 2115 | private static void kdtreesplit(kdtree kdt,
|
---|
| 2116 | int i1,
|
---|
| 2117 | int i2,
|
---|
| 2118 | int d,
|
---|
| 2119 | double s,
|
---|
| 2120 | ref int i3)
|
---|
| 2121 | {
|
---|
| 2122 | int i = 0;
|
---|
| 2123 | int j = 0;
|
---|
| 2124 | int ileft = 0;
|
---|
| 2125 | int iright = 0;
|
---|
| 2126 | double v = 0;
|
---|
| 2127 |
|
---|
| 2128 | i3 = 0;
|
---|
| 2129 |
|
---|
| 2130 | alglib.ap.assert(kdt.n>0, "KDTreeSplit: internal error");
|
---|
| 2131 |
|
---|
| 2132 | //
|
---|
| 2133 | // split XY/Tags in two parts:
|
---|
| 2134 | // * [ILeft,IRight] is non-processed part of XY/Tags
|
---|
| 2135 | //
|
---|
| 2136 | // After cycle is done, we have Ileft=IRight. We deal with
|
---|
| 2137 | // this element separately.
|
---|
| 2138 | //
|
---|
| 2139 | // After this, [I1,ILeft) contains left part, and [ILeft,I2)
|
---|
| 2140 | // contains right part.
|
---|
| 2141 | //
|
---|
| 2142 | ileft = i1;
|
---|
| 2143 | iright = i2-1;
|
---|
| 2144 | while( ileft<iright )
|
---|
| 2145 | {
|
---|
| 2146 | if( (double)(kdt.xy[ileft,d])<=(double)(s) )
|
---|
| 2147 | {
|
---|
| 2148 |
|
---|
| 2149 | //
|
---|
| 2150 | // XY[ILeft] is on its place.
|
---|
| 2151 | // Advance ILeft.
|
---|
| 2152 | //
|
---|
| 2153 | ileft = ileft+1;
|
---|
| 2154 | }
|
---|
| 2155 | else
|
---|
| 2156 | {
|
---|
| 2157 |
|
---|
| 2158 | //
|
---|
| 2159 | // XY[ILeft,..] must be at IRight.
|
---|
| 2160 | // Swap and advance IRight.
|
---|
| 2161 | //
|
---|
| 2162 | for(i=0; i<=2*kdt.nx+kdt.ny-1; i++)
|
---|
| 2163 | {
|
---|
| 2164 | v = kdt.xy[ileft,i];
|
---|
| 2165 | kdt.xy[ileft,i] = kdt.xy[iright,i];
|
---|
| 2166 | kdt.xy[iright,i] = v;
|
---|
| 2167 | }
|
---|
| 2168 | j = kdt.tags[ileft];
|
---|
| 2169 | kdt.tags[ileft] = kdt.tags[iright];
|
---|
| 2170 | kdt.tags[iright] = j;
|
---|
| 2171 | iright = iright-1;
|
---|
| 2172 | }
|
---|
| 2173 | }
|
---|
| 2174 | if( (double)(kdt.xy[ileft,d])<=(double)(s) )
|
---|
| 2175 | {
|
---|
| 2176 | ileft = ileft+1;
|
---|
| 2177 | }
|
---|
| 2178 | else
|
---|
| 2179 | {
|
---|
| 2180 | iright = iright-1;
|
---|
| 2181 | }
|
---|
| 2182 | i3 = ileft;
|
---|
| 2183 | }
|
---|
| 2184 |
|
---|
| 2185 |
|
---|
| 2186 | /*************************************************************************
|
---|
| 2187 | Recursive kd-tree generation subroutine.
|
---|
| 2188 |
|
---|
| 2189 | PARAMETERS
|
---|
| 2190 | KDT tree
|
---|
| 2191 | NodesOffs unused part of Nodes[] which must be filled by tree
|
---|
| 2192 | SplitsOffs unused part of Splits[]
|
---|
| 2193 | I1, I2 points from [I1,I2) are processed
|
---|
| 2194 |
|
---|
| 2195 | NodesOffs[] and SplitsOffs[] must be large enough.
|
---|
| 2196 |
|
---|
| 2197 | -- ALGLIB --
|
---|
| 2198 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 2199 | *************************************************************************/
|
---|
| 2200 | private static void kdtreegeneratetreerec(kdtree kdt,
|
---|
| 2201 | ref int nodesoffs,
|
---|
| 2202 | ref int splitsoffs,
|
---|
| 2203 | int i1,
|
---|
| 2204 | int i2,
|
---|
| 2205 | int maxleafsize)
|
---|
| 2206 | {
|
---|
| 2207 | int n = 0;
|
---|
| 2208 | int nx = 0;
|
---|
| 2209 | int ny = 0;
|
---|
| 2210 | int i = 0;
|
---|
| 2211 | int j = 0;
|
---|
| 2212 | int oldoffs = 0;
|
---|
| 2213 | int i3 = 0;
|
---|
| 2214 | int cntless = 0;
|
---|
| 2215 | int cntgreater = 0;
|
---|
| 2216 | double minv = 0;
|
---|
| 2217 | double maxv = 0;
|
---|
| 2218 | int minidx = 0;
|
---|
| 2219 | int maxidx = 0;
|
---|
| 2220 | int d = 0;
|
---|
| 2221 | double ds = 0;
|
---|
| 2222 | double s = 0;
|
---|
| 2223 | double v = 0;
|
---|
| 2224 | int i_ = 0;
|
---|
| 2225 | int i1_ = 0;
|
---|
| 2226 |
|
---|
| 2227 | alglib.ap.assert(kdt.n>0, "KDTreeGenerateTreeRec: internal error");
|
---|
| 2228 | alglib.ap.assert(i2>i1, "KDTreeGenerateTreeRec: internal error");
|
---|
| 2229 |
|
---|
| 2230 | //
|
---|
| 2231 | // Generate leaf if needed
|
---|
| 2232 | //
|
---|
| 2233 | if( i2-i1<=maxleafsize )
|
---|
| 2234 | {
|
---|
| 2235 | kdt.nodes[nodesoffs+0] = i2-i1;
|
---|
| 2236 | kdt.nodes[nodesoffs+1] = i1;
|
---|
| 2237 | nodesoffs = nodesoffs+2;
|
---|
| 2238 | return;
|
---|
| 2239 | }
|
---|
| 2240 |
|
---|
| 2241 | //
|
---|
| 2242 | // Load values for easier access
|
---|
| 2243 | //
|
---|
| 2244 | nx = kdt.nx;
|
---|
| 2245 | ny = kdt.ny;
|
---|
| 2246 |
|
---|
| 2247 | //
|
---|
| 2248 | // select dimension to split:
|
---|
| 2249 | // * D is a dimension number
|
---|
| 2250 | //
|
---|
| 2251 | d = 0;
|
---|
| 2252 | ds = kdt.curboxmax[0]-kdt.curboxmin[0];
|
---|
| 2253 | for(i=1; i<=nx-1; i++)
|
---|
| 2254 | {
|
---|
| 2255 | v = kdt.curboxmax[i]-kdt.curboxmin[i];
|
---|
| 2256 | if( (double)(v)>(double)(ds) )
|
---|
| 2257 | {
|
---|
| 2258 | ds = v;
|
---|
| 2259 | d = i;
|
---|
| 2260 | }
|
---|
| 2261 | }
|
---|
| 2262 |
|
---|
| 2263 | //
|
---|
| 2264 | // Select split position S using sliding midpoint rule,
|
---|
| 2265 | // rearrange points into [I1,I3) and [I3,I2)
|
---|
| 2266 | //
|
---|
| 2267 | s = kdt.curboxmin[d]+0.5*ds;
|
---|
| 2268 | i1_ = (i1) - (0);
|
---|
| 2269 | for(i_=0; i_<=i2-i1-1;i_++)
|
---|
| 2270 | {
|
---|
| 2271 | kdt.buf[i_] = kdt.xy[i_+i1_,d];
|
---|
| 2272 | }
|
---|
| 2273 | n = i2-i1;
|
---|
| 2274 | cntless = 0;
|
---|
| 2275 | cntgreater = 0;
|
---|
| 2276 | minv = kdt.buf[0];
|
---|
| 2277 | maxv = kdt.buf[0];
|
---|
| 2278 | minidx = i1;
|
---|
| 2279 | maxidx = i1;
|
---|
| 2280 | for(i=0; i<=n-1; i++)
|
---|
| 2281 | {
|
---|
| 2282 | v = kdt.buf[i];
|
---|
| 2283 | if( (double)(v)<(double)(minv) )
|
---|
| 2284 | {
|
---|
| 2285 | minv = v;
|
---|
| 2286 | minidx = i1+i;
|
---|
| 2287 | }
|
---|
| 2288 | if( (double)(v)>(double)(maxv) )
|
---|
| 2289 | {
|
---|
| 2290 | maxv = v;
|
---|
| 2291 | maxidx = i1+i;
|
---|
| 2292 | }
|
---|
| 2293 | if( (double)(v)<(double)(s) )
|
---|
| 2294 | {
|
---|
| 2295 | cntless = cntless+1;
|
---|
| 2296 | }
|
---|
| 2297 | if( (double)(v)>(double)(s) )
|
---|
| 2298 | {
|
---|
| 2299 | cntgreater = cntgreater+1;
|
---|
| 2300 | }
|
---|
| 2301 | }
|
---|
| 2302 | if( cntless>0 && cntgreater>0 )
|
---|
| 2303 | {
|
---|
| 2304 |
|
---|
| 2305 | //
|
---|
| 2306 | // normal midpoint split
|
---|
| 2307 | //
|
---|
| 2308 | kdtreesplit(kdt, i1, i2, d, s, ref i3);
|
---|
| 2309 | }
|
---|
| 2310 | else
|
---|
| 2311 | {
|
---|
| 2312 |
|
---|
| 2313 | //
|
---|
| 2314 | // sliding midpoint
|
---|
| 2315 | //
|
---|
| 2316 | if( cntless==0 )
|
---|
| 2317 | {
|
---|
| 2318 |
|
---|
| 2319 | //
|
---|
| 2320 | // 1. move split to MinV,
|
---|
| 2321 | // 2. place one point to the left bin (move to I1),
|
---|
| 2322 | // others - to the right bin
|
---|
| 2323 | //
|
---|
| 2324 | s = minv;
|
---|
| 2325 | if( minidx!=i1 )
|
---|
| 2326 | {
|
---|
| 2327 | for(i=0; i<=2*kdt.nx+kdt.ny-1; i++)
|
---|
| 2328 | {
|
---|
| 2329 | v = kdt.xy[minidx,i];
|
---|
| 2330 | kdt.xy[minidx,i] = kdt.xy[i1,i];
|
---|
| 2331 | kdt.xy[i1,i] = v;
|
---|
| 2332 | }
|
---|
| 2333 | j = kdt.tags[minidx];
|
---|
| 2334 | kdt.tags[minidx] = kdt.tags[i1];
|
---|
| 2335 | kdt.tags[i1] = j;
|
---|
| 2336 | }
|
---|
| 2337 | i3 = i1+1;
|
---|
| 2338 | }
|
---|
| 2339 | else
|
---|
| 2340 | {
|
---|
| 2341 |
|
---|
| 2342 | //
|
---|
| 2343 | // 1. move split to MaxV,
|
---|
| 2344 | // 2. place one point to the right bin (move to I2-1),
|
---|
| 2345 | // others - to the left bin
|
---|
| 2346 | //
|
---|
| 2347 | s = maxv;
|
---|
| 2348 | if( maxidx!=i2-1 )
|
---|
| 2349 | {
|
---|
| 2350 | for(i=0; i<=2*kdt.nx+kdt.ny-1; i++)
|
---|
| 2351 | {
|
---|
| 2352 | v = kdt.xy[maxidx,i];
|
---|
| 2353 | kdt.xy[maxidx,i] = kdt.xy[i2-1,i];
|
---|
| 2354 | kdt.xy[i2-1,i] = v;
|
---|
| 2355 | }
|
---|
| 2356 | j = kdt.tags[maxidx];
|
---|
| 2357 | kdt.tags[maxidx] = kdt.tags[i2-1];
|
---|
| 2358 | kdt.tags[i2-1] = j;
|
---|
| 2359 | }
|
---|
| 2360 | i3 = i2-1;
|
---|
| 2361 | }
|
---|
| 2362 | }
|
---|
| 2363 |
|
---|
| 2364 | //
|
---|
| 2365 | // Generate 'split' node
|
---|
| 2366 | //
|
---|
| 2367 | kdt.nodes[nodesoffs+0] = 0;
|
---|
| 2368 | kdt.nodes[nodesoffs+1] = d;
|
---|
| 2369 | kdt.nodes[nodesoffs+2] = splitsoffs;
|
---|
| 2370 | kdt.splits[splitsoffs+0] = s;
|
---|
| 2371 | oldoffs = nodesoffs;
|
---|
| 2372 | nodesoffs = nodesoffs+splitnodesize;
|
---|
| 2373 | splitsoffs = splitsoffs+1;
|
---|
| 2374 |
|
---|
| 2375 | //
|
---|
| 2376 | // Recirsive generation:
|
---|
| 2377 | // * update CurBox
|
---|
| 2378 | // * call subroutine
|
---|
| 2379 | // * restore CurBox
|
---|
| 2380 | //
|
---|
| 2381 | kdt.nodes[oldoffs+3] = nodesoffs;
|
---|
| 2382 | v = kdt.curboxmax[d];
|
---|
| 2383 | kdt.curboxmax[d] = s;
|
---|
| 2384 | kdtreegeneratetreerec(kdt, ref nodesoffs, ref splitsoffs, i1, i3, maxleafsize);
|
---|
| 2385 | kdt.curboxmax[d] = v;
|
---|
| 2386 | kdt.nodes[oldoffs+4] = nodesoffs;
|
---|
| 2387 | v = kdt.curboxmin[d];
|
---|
| 2388 | kdt.curboxmin[d] = s;
|
---|
| 2389 | kdtreegeneratetreerec(kdt, ref nodesoffs, ref splitsoffs, i3, i2, maxleafsize);
|
---|
| 2390 | kdt.curboxmin[d] = v;
|
---|
| 2391 | }
|
---|
| 2392 |
|
---|
| 2393 |
|
---|
| 2394 | /*************************************************************************
|
---|
| 2395 | Recursive subroutine for NN queries.
|
---|
| 2396 |
|
---|
| 2397 | -- ALGLIB --
|
---|
| 2398 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 2399 | *************************************************************************/
|
---|
| 2400 | private static void kdtreequerynnrec(kdtree kdt,
|
---|
| 2401 | int offs)
|
---|
| 2402 | {
|
---|
| 2403 | double ptdist = 0;
|
---|
| 2404 | int i = 0;
|
---|
| 2405 | int j = 0;
|
---|
| 2406 | int nx = 0;
|
---|
| 2407 | int i1 = 0;
|
---|
| 2408 | int i2 = 0;
|
---|
| 2409 | int d = 0;
|
---|
| 2410 | double s = 0;
|
---|
| 2411 | double v = 0;
|
---|
| 2412 | double t1 = 0;
|
---|
| 2413 | int childbestoffs = 0;
|
---|
| 2414 | int childworstoffs = 0;
|
---|
| 2415 | int childoffs = 0;
|
---|
| 2416 | double prevdist = 0;
|
---|
| 2417 | bool todive = new bool();
|
---|
| 2418 | bool bestisleft = new bool();
|
---|
| 2419 | bool updatemin = new bool();
|
---|
| 2420 |
|
---|
| 2421 | alglib.ap.assert(kdt.n>0, "KDTreeQueryNNRec: internal error");
|
---|
| 2422 |
|
---|
| 2423 | //
|
---|
| 2424 | // Leaf node.
|
---|
| 2425 | // Process points.
|
---|
| 2426 | //
|
---|
| 2427 | if( kdt.nodes[offs]>0 )
|
---|
| 2428 | {
|
---|
| 2429 | i1 = kdt.nodes[offs+1];
|
---|
| 2430 | i2 = i1+kdt.nodes[offs];
|
---|
| 2431 | for(i=i1; i<=i2-1; i++)
|
---|
| 2432 | {
|
---|
| 2433 |
|
---|
| 2434 | //
|
---|
| 2435 | // Calculate distance
|
---|
| 2436 | //
|
---|
| 2437 | ptdist = 0;
|
---|
| 2438 | nx = kdt.nx;
|
---|
| 2439 | if( kdt.normtype==0 )
|
---|
| 2440 | {
|
---|
| 2441 | for(j=0; j<=nx-1; j++)
|
---|
| 2442 | {
|
---|
| 2443 | ptdist = Math.Max(ptdist, Math.Abs(kdt.xy[i,j]-kdt.x[j]));
|
---|
| 2444 | }
|
---|
| 2445 | }
|
---|
| 2446 | if( kdt.normtype==1 )
|
---|
| 2447 | {
|
---|
| 2448 | for(j=0; j<=nx-1; j++)
|
---|
| 2449 | {
|
---|
| 2450 | ptdist = ptdist+Math.Abs(kdt.xy[i,j]-kdt.x[j]);
|
---|
| 2451 | }
|
---|
| 2452 | }
|
---|
| 2453 | if( kdt.normtype==2 )
|
---|
| 2454 | {
|
---|
| 2455 | for(j=0; j<=nx-1; j++)
|
---|
| 2456 | {
|
---|
| 2457 | ptdist = ptdist+math.sqr(kdt.xy[i,j]-kdt.x[j]);
|
---|
| 2458 | }
|
---|
| 2459 | }
|
---|
| 2460 |
|
---|
| 2461 | //
|
---|
| 2462 | // Skip points with zero distance if self-matches are turned off
|
---|
| 2463 | //
|
---|
| 2464 | if( (double)(ptdist)==(double)(0) && !kdt.selfmatch )
|
---|
| 2465 | {
|
---|
| 2466 | continue;
|
---|
| 2467 | }
|
---|
| 2468 |
|
---|
| 2469 | //
|
---|
| 2470 | // We CAN'T process point if R-criterion isn't satisfied,
|
---|
| 2471 | // i.e. (RNeeded<>0) AND (PtDist>R).
|
---|
| 2472 | //
|
---|
| 2473 | if( (double)(kdt.rneeded)==(double)(0) || (double)(ptdist)<=(double)(kdt.rneeded) )
|
---|
| 2474 | {
|
---|
| 2475 |
|
---|
| 2476 | //
|
---|
| 2477 | // R-criterion is satisfied, we must either:
|
---|
| 2478 | // * replace worst point, if (KNeeded<>0) AND (KCur=KNeeded)
|
---|
| 2479 | // (or skip, if worst point is better)
|
---|
| 2480 | // * add point without replacement otherwise
|
---|
| 2481 | //
|
---|
| 2482 | if( kdt.kcur<kdt.kneeded || kdt.kneeded==0 )
|
---|
| 2483 | {
|
---|
| 2484 |
|
---|
| 2485 | //
|
---|
| 2486 | // add current point to heap without replacement
|
---|
| 2487 | //
|
---|
| 2488 | tsort.tagheappushi(ref kdt.r, ref kdt.idx, ref kdt.kcur, ptdist, i);
|
---|
| 2489 | }
|
---|
| 2490 | else
|
---|
| 2491 | {
|
---|
| 2492 |
|
---|
| 2493 | //
|
---|
| 2494 | // New points are added or not, depending on their distance.
|
---|
| 2495 | // If added, they replace element at the top of the heap
|
---|
| 2496 | //
|
---|
| 2497 | if( (double)(ptdist)<(double)(kdt.r[0]) )
|
---|
| 2498 | {
|
---|
| 2499 | if( kdt.kneeded==1 )
|
---|
| 2500 | {
|
---|
| 2501 | kdt.idx[0] = i;
|
---|
| 2502 | kdt.r[0] = ptdist;
|
---|
| 2503 | }
|
---|
| 2504 | else
|
---|
| 2505 | {
|
---|
| 2506 | tsort.tagheapreplacetopi(ref kdt.r, ref kdt.idx, kdt.kneeded, ptdist, i);
|
---|
| 2507 | }
|
---|
| 2508 | }
|
---|
| 2509 | }
|
---|
| 2510 | }
|
---|
| 2511 | }
|
---|
| 2512 | return;
|
---|
| 2513 | }
|
---|
| 2514 |
|
---|
| 2515 | //
|
---|
| 2516 | // Simple split
|
---|
| 2517 | //
|
---|
| 2518 | if( kdt.nodes[offs]==0 )
|
---|
| 2519 | {
|
---|
| 2520 |
|
---|
| 2521 | //
|
---|
| 2522 | // Load:
|
---|
| 2523 | // * D dimension to split
|
---|
| 2524 | // * S split position
|
---|
| 2525 | //
|
---|
| 2526 | d = kdt.nodes[offs+1];
|
---|
| 2527 | s = kdt.splits[kdt.nodes[offs+2]];
|
---|
| 2528 |
|
---|
| 2529 | //
|
---|
| 2530 | // Calculate:
|
---|
| 2531 | // * ChildBestOffs child box with best chances
|
---|
| 2532 | // * ChildWorstOffs child box with worst chances
|
---|
| 2533 | //
|
---|
| 2534 | if( (double)(kdt.x[d])<=(double)(s) )
|
---|
| 2535 | {
|
---|
| 2536 | childbestoffs = kdt.nodes[offs+3];
|
---|
| 2537 | childworstoffs = kdt.nodes[offs+4];
|
---|
| 2538 | bestisleft = true;
|
---|
| 2539 | }
|
---|
| 2540 | else
|
---|
| 2541 | {
|
---|
| 2542 | childbestoffs = kdt.nodes[offs+4];
|
---|
| 2543 | childworstoffs = kdt.nodes[offs+3];
|
---|
| 2544 | bestisleft = false;
|
---|
| 2545 | }
|
---|
| 2546 |
|
---|
| 2547 | //
|
---|
| 2548 | // Navigate through childs
|
---|
| 2549 | //
|
---|
| 2550 | for(i=0; i<=1; i++)
|
---|
| 2551 | {
|
---|
| 2552 |
|
---|
| 2553 | //
|
---|
| 2554 | // Select child to process:
|
---|
| 2555 | // * ChildOffs current child offset in Nodes[]
|
---|
| 2556 | // * UpdateMin whether minimum or maximum value
|
---|
| 2557 | // of bounding box is changed on update
|
---|
| 2558 | //
|
---|
| 2559 | if( i==0 )
|
---|
| 2560 | {
|
---|
| 2561 | childoffs = childbestoffs;
|
---|
| 2562 | updatemin = !bestisleft;
|
---|
| 2563 | }
|
---|
| 2564 | else
|
---|
| 2565 | {
|
---|
| 2566 | updatemin = bestisleft;
|
---|
| 2567 | childoffs = childworstoffs;
|
---|
| 2568 | }
|
---|
| 2569 |
|
---|
| 2570 | //
|
---|
| 2571 | // Update bounding box and current distance
|
---|
| 2572 | //
|
---|
| 2573 | if( updatemin )
|
---|
| 2574 | {
|
---|
| 2575 | prevdist = kdt.curdist;
|
---|
| 2576 | t1 = kdt.x[d];
|
---|
| 2577 | v = kdt.curboxmin[d];
|
---|
| 2578 | if( (double)(t1)<=(double)(s) )
|
---|
| 2579 | {
|
---|
| 2580 | if( kdt.normtype==0 )
|
---|
| 2581 | {
|
---|
| 2582 | kdt.curdist = Math.Max(kdt.curdist, s-t1);
|
---|
| 2583 | }
|
---|
| 2584 | if( kdt.normtype==1 )
|
---|
| 2585 | {
|
---|
| 2586 | kdt.curdist = kdt.curdist-Math.Max(v-t1, 0)+s-t1;
|
---|
| 2587 | }
|
---|
| 2588 | if( kdt.normtype==2 )
|
---|
| 2589 | {
|
---|
| 2590 | kdt.curdist = kdt.curdist-math.sqr(Math.Max(v-t1, 0))+math.sqr(s-t1);
|
---|
| 2591 | }
|
---|
| 2592 | }
|
---|
| 2593 | kdt.curboxmin[d] = s;
|
---|
| 2594 | }
|
---|
| 2595 | else
|
---|
| 2596 | {
|
---|
| 2597 | prevdist = kdt.curdist;
|
---|
| 2598 | t1 = kdt.x[d];
|
---|
| 2599 | v = kdt.curboxmax[d];
|
---|
| 2600 | if( (double)(t1)>=(double)(s) )
|
---|
| 2601 | {
|
---|
| 2602 | if( kdt.normtype==0 )
|
---|
| 2603 | {
|
---|
| 2604 | kdt.curdist = Math.Max(kdt.curdist, t1-s);
|
---|
| 2605 | }
|
---|
| 2606 | if( kdt.normtype==1 )
|
---|
| 2607 | {
|
---|
| 2608 | kdt.curdist = kdt.curdist-Math.Max(t1-v, 0)+t1-s;
|
---|
| 2609 | }
|
---|
| 2610 | if( kdt.normtype==2 )
|
---|
| 2611 | {
|
---|
| 2612 | kdt.curdist = kdt.curdist-math.sqr(Math.Max(t1-v, 0))+math.sqr(t1-s);
|
---|
| 2613 | }
|
---|
| 2614 | }
|
---|
| 2615 | kdt.curboxmax[d] = s;
|
---|
| 2616 | }
|
---|
| 2617 |
|
---|
| 2618 | //
|
---|
| 2619 | // Decide: to dive into cell or not to dive
|
---|
| 2620 | //
|
---|
| 2621 | if( (double)(kdt.rneeded)!=(double)(0) && (double)(kdt.curdist)>(double)(kdt.rneeded) )
|
---|
| 2622 | {
|
---|
| 2623 | todive = false;
|
---|
| 2624 | }
|
---|
| 2625 | else
|
---|
| 2626 | {
|
---|
| 2627 | if( kdt.kcur<kdt.kneeded || kdt.kneeded==0 )
|
---|
| 2628 | {
|
---|
| 2629 |
|
---|
| 2630 | //
|
---|
| 2631 | // KCur<KNeeded (i.e. not all points are found)
|
---|
| 2632 | //
|
---|
| 2633 | todive = true;
|
---|
| 2634 | }
|
---|
| 2635 | else
|
---|
| 2636 | {
|
---|
| 2637 |
|
---|
| 2638 | //
|
---|
| 2639 | // KCur=KNeeded, decide to dive or not to dive
|
---|
| 2640 | // using point position relative to bounding box.
|
---|
| 2641 | //
|
---|
| 2642 | todive = (double)(kdt.curdist)<=(double)(kdt.r[0]*kdt.approxf);
|
---|
| 2643 | }
|
---|
| 2644 | }
|
---|
| 2645 | if( todive )
|
---|
| 2646 | {
|
---|
| 2647 | kdtreequerynnrec(kdt, childoffs);
|
---|
| 2648 | }
|
---|
| 2649 |
|
---|
| 2650 | //
|
---|
| 2651 | // Restore bounding box and distance
|
---|
| 2652 | //
|
---|
| 2653 | if( updatemin )
|
---|
| 2654 | {
|
---|
| 2655 | kdt.curboxmin[d] = v;
|
---|
| 2656 | }
|
---|
| 2657 | else
|
---|
| 2658 | {
|
---|
| 2659 | kdt.curboxmax[d] = v;
|
---|
| 2660 | }
|
---|
| 2661 | kdt.curdist = prevdist;
|
---|
| 2662 | }
|
---|
| 2663 | return;
|
---|
| 2664 | }
|
---|
| 2665 | }
|
---|
| 2666 |
|
---|
| 2667 |
|
---|
| 2668 | /*************************************************************************
|
---|
| 2669 | Copies X[] to KDT.X[]
|
---|
| 2670 | Loads distance from X[] to bounding box.
|
---|
| 2671 | Initializes CurBox[].
|
---|
| 2672 |
|
---|
| 2673 | -- ALGLIB --
|
---|
| 2674 | Copyright 28.02.2010 by Bochkanov Sergey
|
---|
| 2675 | *************************************************************************/
|
---|
| 2676 | private static void kdtreeinitbox(kdtree kdt,
|
---|
| 2677 | double[] x)
|
---|
| 2678 | {
|
---|
| 2679 | int i = 0;
|
---|
| 2680 | double vx = 0;
|
---|
| 2681 | double vmin = 0;
|
---|
| 2682 | double vmax = 0;
|
---|
| 2683 |
|
---|
| 2684 | alglib.ap.assert(kdt.n>0, "KDTreeInitBox: internal error");
|
---|
| 2685 |
|
---|
| 2686 | //
|
---|
| 2687 | // calculate distance from point to current bounding box
|
---|
| 2688 | //
|
---|
| 2689 | kdt.curdist = 0;
|
---|
| 2690 | if( kdt.normtype==0 )
|
---|
| 2691 | {
|
---|
| 2692 | for(i=0; i<=kdt.nx-1; i++)
|
---|
| 2693 | {
|
---|
| 2694 | vx = x[i];
|
---|
| 2695 | vmin = kdt.boxmin[i];
|
---|
| 2696 | vmax = kdt.boxmax[i];
|
---|
| 2697 | kdt.x[i] = vx;
|
---|
| 2698 | kdt.curboxmin[i] = vmin;
|
---|
| 2699 | kdt.curboxmax[i] = vmax;
|
---|
| 2700 | if( (double)(vx)<(double)(vmin) )
|
---|
| 2701 | {
|
---|
| 2702 | kdt.curdist = Math.Max(kdt.curdist, vmin-vx);
|
---|
| 2703 | }
|
---|
| 2704 | else
|
---|
| 2705 | {
|
---|
| 2706 | if( (double)(vx)>(double)(vmax) )
|
---|
| 2707 | {
|
---|
| 2708 | kdt.curdist = Math.Max(kdt.curdist, vx-vmax);
|
---|
| 2709 | }
|
---|
| 2710 | }
|
---|
| 2711 | }
|
---|
| 2712 | }
|
---|
| 2713 | if( kdt.normtype==1 )
|
---|
| 2714 | {
|
---|
| 2715 | for(i=0; i<=kdt.nx-1; i++)
|
---|
| 2716 | {
|
---|
| 2717 | vx = x[i];
|
---|
| 2718 | vmin = kdt.boxmin[i];
|
---|
| 2719 | vmax = kdt.boxmax[i];
|
---|
| 2720 | kdt.x[i] = vx;
|
---|
| 2721 | kdt.curboxmin[i] = vmin;
|
---|
| 2722 | kdt.curboxmax[i] = vmax;
|
---|
| 2723 | if( (double)(vx)<(double)(vmin) )
|
---|
| 2724 | {
|
---|
| 2725 | kdt.curdist = kdt.curdist+vmin-vx;
|
---|
| 2726 | }
|
---|
| 2727 | else
|
---|
| 2728 | {
|
---|
| 2729 | if( (double)(vx)>(double)(vmax) )
|
---|
| 2730 | {
|
---|
| 2731 | kdt.curdist = kdt.curdist+vx-vmax;
|
---|
| 2732 | }
|
---|
| 2733 | }
|
---|
| 2734 | }
|
---|
| 2735 | }
|
---|
| 2736 | if( kdt.normtype==2 )
|
---|
| 2737 | {
|
---|
| 2738 | for(i=0; i<=kdt.nx-1; i++)
|
---|
| 2739 | {
|
---|
| 2740 | vx = x[i];
|
---|
| 2741 | vmin = kdt.boxmin[i];
|
---|
| 2742 | vmax = kdt.boxmax[i];
|
---|
| 2743 | kdt.x[i] = vx;
|
---|
| 2744 | kdt.curboxmin[i] = vmin;
|
---|
| 2745 | kdt.curboxmax[i] = vmax;
|
---|
| 2746 | if( (double)(vx)<(double)(vmin) )
|
---|
| 2747 | {
|
---|
| 2748 | kdt.curdist = kdt.curdist+math.sqr(vmin-vx);
|
---|
| 2749 | }
|
---|
| 2750 | else
|
---|
| 2751 | {
|
---|
| 2752 | if( (double)(vx)>(double)(vmax) )
|
---|
| 2753 | {
|
---|
| 2754 | kdt.curdist = kdt.curdist+math.sqr(vx-vmax);
|
---|
| 2755 | }
|
---|
| 2756 | }
|
---|
| 2757 | }
|
---|
| 2758 | }
|
---|
| 2759 | }
|
---|
| 2760 |
|
---|
| 2761 |
|
---|
| 2762 | /*************************************************************************
|
---|
| 2763 | This function allocates all dataset-independent array fields of KDTree,
|
---|
| 2764 | i.e. such array fields that their dimensions do not depend on dataset
|
---|
| 2765 | size.
|
---|
| 2766 |
|
---|
| 2767 | This function do not sets KDT.NX or KDT.NY - it just allocates arrays
|
---|
| 2768 |
|
---|
| 2769 | -- ALGLIB --
|
---|
| 2770 | Copyright 14.03.2011 by Bochkanov Sergey
|
---|
| 2771 | *************************************************************************/
|
---|
| 2772 | private static void kdtreeallocdatasetindependent(kdtree kdt,
|
---|
| 2773 | int nx,
|
---|
| 2774 | int ny)
|
---|
| 2775 | {
|
---|
| 2776 | alglib.ap.assert(kdt.n>0, "KDTreeAllocDatasetIndependent: internal error");
|
---|
| 2777 | kdt.x = new double[nx];
|
---|
| 2778 | kdt.boxmin = new double[nx];
|
---|
| 2779 | kdt.boxmax = new double[nx];
|
---|
| 2780 | kdt.curboxmin = new double[nx];
|
---|
| 2781 | kdt.curboxmax = new double[nx];
|
---|
| 2782 | }
|
---|
| 2783 |
|
---|
| 2784 |
|
---|
| 2785 | /*************************************************************************
|
---|
| 2786 | This function allocates all dataset-dependent array fields of KDTree, i.e.
|
---|
| 2787 | such array fields that their dimensions depend on dataset size.
|
---|
| 2788 |
|
---|
| 2789 | This function do not sets KDT.N, KDT.NX or KDT.NY -
|
---|
| 2790 | it just allocates arrays.
|
---|
| 2791 |
|
---|
| 2792 | -- ALGLIB --
|
---|
| 2793 | Copyright 14.03.2011 by Bochkanov Sergey
|
---|
| 2794 | *************************************************************************/
|
---|
| 2795 | private static void kdtreeallocdatasetdependent(kdtree kdt,
|
---|
| 2796 | int n,
|
---|
| 2797 | int nx,
|
---|
| 2798 | int ny)
|
---|
| 2799 | {
|
---|
| 2800 | alglib.ap.assert(n>0, "KDTreeAllocDatasetDependent: internal error");
|
---|
| 2801 | kdt.xy = new double[n, 2*nx+ny];
|
---|
| 2802 | kdt.tags = new int[n];
|
---|
| 2803 | kdt.idx = new int[n];
|
---|
| 2804 | kdt.r = new double[n];
|
---|
| 2805 | kdt.x = new double[nx];
|
---|
| 2806 | kdt.buf = new double[Math.Max(n, nx)];
|
---|
| 2807 | kdt.nodes = new int[splitnodesize*2*n];
|
---|
| 2808 | kdt.splits = new double[2*n];
|
---|
| 2809 | }
|
---|
| 2810 |
|
---|
| 2811 |
|
---|
| 2812 | /*************************************************************************
|
---|
| 2813 | This function allocates temporaries.
|
---|
| 2814 |
|
---|
| 2815 | This function do not sets KDT.N, KDT.NX or KDT.NY -
|
---|
| 2816 | it just allocates arrays.
|
---|
| 2817 |
|
---|
| 2818 | -- ALGLIB --
|
---|
| 2819 | Copyright 14.03.2011 by Bochkanov Sergey
|
---|
| 2820 | *************************************************************************/
|
---|
| 2821 | private static void kdtreealloctemporaries(kdtree kdt,
|
---|
| 2822 | int n,
|
---|
| 2823 | int nx,
|
---|
| 2824 | int ny)
|
---|
| 2825 | {
|
---|
| 2826 | alglib.ap.assert(n>0, "KDTreeAllocTemporaries: internal error");
|
---|
| 2827 | kdt.x = new double[nx];
|
---|
| 2828 | kdt.idx = new int[n];
|
---|
| 2829 | kdt.r = new double[n];
|
---|
| 2830 | kdt.buf = new double[Math.Max(n, nx)];
|
---|
| 2831 | kdt.curboxmin = new double[nx];
|
---|
| 2832 | kdt.curboxmax = new double[nx];
|
---|
| 2833 | }
|
---|
| 2834 |
|
---|
| 2835 |
|
---|
| 2836 | }
|
---|
| 2837 | }
|
---|
| 2838 |
|
---|