[15045] | 1 | #region License Information
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| 2 | /* HeuristicLab
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| 3 | * Copyright (C) 2002-2016 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
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| 4 | * and the BEACON Center for the Study of Evolution in Action.
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| 5 | *
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| 6 | * This file is part of HeuristicLab.
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| 7 | *
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| 8 | * HeuristicLab is free software: you can redistribute it and/or modify
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| 9 | * it under the terms of the GNU General Public License as published by
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| 10 | * the Free Software Foundation, either version 3 of the License, or
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| 11 | * (at your option) any later version.
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| 12 | *
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| 13 | * HeuristicLab is distributed in the hope that it will be useful,
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| 14 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 15 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 16 | * GNU General Public License for more details.
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| 17 | *
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| 18 | * You should have received a copy of the GNU General Public License
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| 19 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
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| 20 | */
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| 21 | #endregion
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| 22 |
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| 23 | using System;
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| 24 | using System.Collections.Generic;
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| 25 | using System.Linq;
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| 26 | using System.Threading;
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| 27 | using HeuristicLab.Analysis;
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| 28 | using HeuristicLab.Common;
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| 29 | using HeuristicLab.Core;
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| 30 | using HeuristicLab.Data;
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| 31 | using HeuristicLab.Encodings.RealVectorEncoding;
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| 32 | using HeuristicLab.Optimization;
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| 33 | using HeuristicLab.Parameters;
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| 34 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
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| 35 | using HeuristicLab.Problems.TestFunctions.MultiObjective;
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| 36 | using HeuristicLab.Random;
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| 37 |
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| 38 | namespace HeuristicLab.Algorithms.MOCMAEvolutionStrategy {
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[15226] | 39 | [Item("Multi-Objective CMA Evolution Strategy (MOCMAES)", "A multi objective evolution strategy based on covariance matrix adaptation. Code is based on 'Covariance Matrix Adaptation for Multi - objective Optimization' by Igel, Hansen and Roth")]
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[15045] | 40 | [Creatable(CreatableAttribute.Categories.PopulationBasedAlgorithms, Priority = 210)]
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| 41 | [StorableClass]
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| 42 | public class MOCMAEvolutionStrategy : BasicAlgorithm {
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[15176] | 43 | public override Type ProblemType {
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[15045] | 44 | get { return typeof(MultiObjectiveBasicProblem<RealVectorEncoding>); }
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| 45 | }
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[15176] | 46 | public new MultiObjectiveBasicProblem<RealVectorEncoding> Problem {
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[15045] | 47 | get { return (MultiObjectiveBasicProblem<RealVectorEncoding>)base.Problem; }
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| 48 | set { base.Problem = value; }
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| 49 | }
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[15176] | 50 | public override bool SupportsPause {
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[15045] | 51 | get { return true; }
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| 52 | }
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| 53 |
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[15176] | 54 | #region Storable fields
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[15045] | 55 | [Storable]
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| 56 | private IRandom random = new MersenneTwister();
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| 57 | [Storable]
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| 58 | private NormalDistributedRandom gauss;
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| 59 | [Storable]
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| 60 | private Individual[] solutions;
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| 61 | [Storable]
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| 62 | private double stepSizeLearningRate; //=cp learning rate in [0,1]
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| 63 | [Storable]
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| 64 | private double stepSizeDampeningFactor; //d
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| 65 | [Storable]
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| 66 | private double targetSuccessProbability;// p^target_succ
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| 67 | [Storable]
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| 68 | private double evolutionPathLearningRate;//cc
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| 69 | [Storable]
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| 70 | private double covarianceMatrixLearningRate;//ccov
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| 71 | [Storable]
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| 72 | private double covarianceMatrixUnlearningRate;
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| 73 | [Storable]
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| 74 | private double successThreshold; //ptresh
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[15089] | 75 |
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[15045] | 76 | #endregion
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| 77 |
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| 78 | #region ParameterNames
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| 79 | private const string MaximumRuntimeName = "Maximum Runtime";
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| 80 | private const string SeedName = "Seed";
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| 81 | private const string SetSeedRandomlyName = "SetSeedRandomly";
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| 82 | private const string PopulationSizeName = "PopulationSize";
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| 83 | private const string MaximumGenerationsName = "MaximumGenerations";
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| 84 | private const string MaximumEvaluatedSolutionsName = "MaximumEvaluatedSolutions";
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| 85 | private const string InitialSigmaName = "InitialSigma";
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| 86 | private const string IndicatorName = "Indicator";
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| 87 |
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| 88 | private const string EvaluationsResultName = "Evaluations";
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| 89 | private const string IterationsResultName = "Generations";
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| 90 | private const string TimetableResultName = "Timetable";
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| 91 | private const string HypervolumeResultName = "Hypervolume";
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| 92 | private const string GenerationalDistanceResultName = "Generational Distance";
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| 93 | private const string InvertedGenerationalDistanceResultName = "Inverted Generational Distance";
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| 94 | private const string CrowdingResultName = "Crowding";
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| 95 | private const string SpacingResultName = "Spacing";
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| 96 | private const string CurrentFrontResultName = "Pareto Front";
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| 97 | private const string BestHypervolumeResultName = "Best Hypervolume";
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| 98 | private const string BestKnownHypervolumeResultName = "Best known hypervolume";
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| 99 | private const string DifferenceToBestKnownHypervolumeResultName = "Absolute Distance to BestKnownHypervolume";
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| 100 | private const string ScatterPlotResultName = "ScatterPlot";
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| 101 | #endregion
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| 102 |
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| 103 | #region ParameterProperties
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[15176] | 104 | public IFixedValueParameter<IntValue> MaximumRuntimeParameter {
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[15045] | 105 | get { return (IFixedValueParameter<IntValue>)Parameters[MaximumRuntimeName]; }
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| 106 | }
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[15176] | 107 | public IFixedValueParameter<IntValue> SeedParameter {
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[15045] | 108 | get { return (IFixedValueParameter<IntValue>)Parameters[SeedName]; }
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| 109 | }
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[15176] | 110 | public FixedValueParameter<BoolValue> SetSeedRandomlyParameter {
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[15045] | 111 | get { return (FixedValueParameter<BoolValue>)Parameters[SetSeedRandomlyName]; }
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| 112 | }
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[15176] | 113 | public IFixedValueParameter<IntValue> PopulationSizeParameter {
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[15045] | 114 | get { return (IFixedValueParameter<IntValue>)Parameters[PopulationSizeName]; }
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| 115 | }
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[15176] | 116 | public IFixedValueParameter<IntValue> MaximumGenerationsParameter {
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[15045] | 117 | get { return (IFixedValueParameter<IntValue>)Parameters[MaximumGenerationsName]; }
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| 118 | }
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[15176] | 119 | public IFixedValueParameter<IntValue> MaximumEvaluatedSolutionsParameter {
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[15045] | 120 | get { return (IFixedValueParameter<IntValue>)Parameters[MaximumEvaluatedSolutionsName]; }
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| 121 | }
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[15176] | 122 | public IValueParameter<DoubleArray> InitialSigmaParameter {
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[15045] | 123 | get { return (IValueParameter<DoubleArray>)Parameters[InitialSigmaName]; }
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| 124 | }
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[15176] | 125 | public IConstrainedValueParameter<IIndicator> IndicatorParameter {
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[15045] | 126 | get { return (IConstrainedValueParameter<IIndicator>)Parameters[IndicatorName]; }
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| 127 | }
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| 128 | #endregion
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| 129 |
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| 130 | #region Properties
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[15176] | 131 | public int MaximumRuntime {
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[15045] | 132 | get { return MaximumRuntimeParameter.Value.Value; }
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| 133 | set { MaximumRuntimeParameter.Value.Value = value; }
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| 134 | }
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[15176] | 135 | public int Seed {
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[15045] | 136 | get { return SeedParameter.Value.Value; }
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| 137 | set { SeedParameter.Value.Value = value; }
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| 138 | }
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[15176] | 139 | public bool SetSeedRandomly {
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[15045] | 140 | get { return SetSeedRandomlyParameter.Value.Value; }
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| 141 | set { SetSeedRandomlyParameter.Value.Value = value; }
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| 142 | }
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[15176] | 143 | public int PopulationSize {
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[15045] | 144 | get { return PopulationSizeParameter.Value.Value; }
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| 145 | set { PopulationSizeParameter.Value.Value = value; }
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| 146 | }
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[15176] | 147 | public int MaximumGenerations {
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[15045] | 148 | get { return MaximumGenerationsParameter.Value.Value; }
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| 149 | set { MaximumGenerationsParameter.Value.Value = value; }
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| 150 | }
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[15176] | 151 | public int MaximumEvaluatedSolutions {
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[15045] | 152 | get { return MaximumEvaluatedSolutionsParameter.Value.Value; }
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| 153 | set { MaximumEvaluatedSolutionsParameter.Value.Value = value; }
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| 154 | }
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[15176] | 155 | public DoubleArray InitialSigma {
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[15045] | 156 | get { return InitialSigmaParameter.Value; }
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| 157 | set { InitialSigmaParameter.Value = value; }
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| 158 | }
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[15176] | 159 | public IIndicator Indicator {
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[15045] | 160 | get { return IndicatorParameter.Value; }
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| 161 | set { IndicatorParameter.Value = value; }
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| 162 | }
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| 163 |
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| 164 | public double StepSizeLearningRate { get { return stepSizeLearningRate; } }
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| 165 | public double StepSizeDampeningFactor { get { return stepSizeDampeningFactor; } }
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| 166 | public double TargetSuccessProbability { get { return targetSuccessProbability; } }
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| 167 | public double EvolutionPathLearningRate { get { return evolutionPathLearningRate; } }
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| 168 | public double CovarianceMatrixLearningRate { get { return covarianceMatrixLearningRate; } }
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| 169 | public double CovarianceMatrixUnlearningRate { get { return covarianceMatrixUnlearningRate; } }
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| 170 | public double SuccessThreshold { get { return successThreshold; } }
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| 171 | #endregion
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| 172 |
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| 173 | #region ResultsProperties
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[15176] | 174 | private int ResultsEvaluations {
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[15045] | 175 | get { return ((IntValue)Results[EvaluationsResultName].Value).Value; }
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| 176 | set { ((IntValue)Results[EvaluationsResultName].Value).Value = value; }
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| 177 | }
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[15176] | 178 | private int ResultsIterations {
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[15045] | 179 | get { return ((IntValue)Results[IterationsResultName].Value).Value; }
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| 180 | set { ((IntValue)Results[IterationsResultName].Value).Value = value; }
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| 181 | }
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| 182 | #region Datatable
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[15176] | 183 | private DataTable ResultsQualities {
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[15045] | 184 | get { return (DataTable)Results[TimetableResultName].Value; }
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| 185 | }
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[15176] | 186 | private DataRow ResultsBestHypervolumeDataLine {
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[15045] | 187 | get { return ResultsQualities.Rows[BestHypervolumeResultName]; }
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| 188 | }
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[15176] | 189 | private DataRow ResultsHypervolumeDataLine {
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[15045] | 190 | get { return ResultsQualities.Rows[HypervolumeResultName]; }
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| 191 | }
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[15176] | 192 | private DataRow ResultsGenerationalDistanceDataLine {
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[15045] | 193 | get { return ResultsQualities.Rows[GenerationalDistanceResultName]; }
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| 194 | }
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[15176] | 195 | private DataRow ResultsInvertedGenerationalDistanceDataLine {
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[15045] | 196 | get { return ResultsQualities.Rows[InvertedGenerationalDistanceResultName]; }
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| 197 | }
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[15176] | 198 | private DataRow ResultsCrowdingDataLine {
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[15045] | 199 | get { return ResultsQualities.Rows[CrowdingResultName]; }
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| 200 | }
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[15176] | 201 | private DataRow ResultsSpacingDataLine {
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[15045] | 202 | get { return ResultsQualities.Rows[SpacingResultName]; }
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| 203 | }
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[15176] | 204 | private DataRow ResultsHypervolumeDifferenceDataLine {
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[15045] | 205 | get { return ResultsQualities.Rows[DifferenceToBestKnownHypervolumeResultName]; }
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| 206 | }
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| 207 | #endregion
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| 208 | //QualityIndicators
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[15176] | 209 | private double ResultsHypervolume {
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[15045] | 210 | get { return ((DoubleValue)Results[HypervolumeResultName].Value).Value; }
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| 211 | set { ((DoubleValue)Results[HypervolumeResultName].Value).Value = value; }
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| 212 | }
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[15176] | 213 | private double ResultsGenerationalDistance {
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[15045] | 214 | get { return ((DoubleValue)Results[GenerationalDistanceResultName].Value).Value; }
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| 215 | set { ((DoubleValue)Results[GenerationalDistanceResultName].Value).Value = value; }
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| 216 | }
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[15176] | 217 | private double ResultsInvertedGenerationalDistance {
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[15045] | 218 | get { return ((DoubleValue)Results[InvertedGenerationalDistanceResultName].Value).Value; }
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| 219 | set { ((DoubleValue)Results[InvertedGenerationalDistanceResultName].Value).Value = value; }
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| 220 | }
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[15176] | 221 | private double ResultsCrowding {
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[15045] | 222 | get { return ((DoubleValue)Results[CrowdingResultName].Value).Value; }
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| 223 | set { ((DoubleValue)Results[CrowdingResultName].Value).Value = value; }
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| 224 | }
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[15176] | 225 | private double ResultsSpacing {
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[15045] | 226 | get { return ((DoubleValue)Results[SpacingResultName].Value).Value; }
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| 227 | set { ((DoubleValue)Results[SpacingResultName].Value).Value = value; }
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| 228 | }
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[15176] | 229 | private double ResultsBestHypervolume {
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[15045] | 230 | get { return ((DoubleValue)Results[BestHypervolumeResultName].Value).Value; }
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| 231 | set { ((DoubleValue)Results[BestHypervolumeResultName].Value).Value = value; }
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| 232 | }
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[15176] | 233 | private double ResultsBestKnownHypervolume {
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[15045] | 234 | get { return ((DoubleValue)Results[BestKnownHypervolumeResultName].Value).Value; }
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| 235 | set { ((DoubleValue)Results[BestKnownHypervolumeResultName].Value).Value = value; }
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| 236 | }
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[15176] | 237 | private double ResultsDifferenceBestKnownHypervolume {
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[15045] | 238 | get { return ((DoubleValue)Results[DifferenceToBestKnownHypervolumeResultName].Value).Value; }
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| 239 | set { ((DoubleValue)Results[DifferenceToBestKnownHypervolumeResultName].Value).Value = value; }
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| 240 |
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| 241 | }
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| 242 | //Solutions
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[15176] | 243 | private DoubleMatrix ResultsSolutions {
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[15045] | 244 | get { return (DoubleMatrix)Results[CurrentFrontResultName].Value; }
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| 245 | set { Results[CurrentFrontResultName].Value = value; }
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| 246 | }
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[15203] | 247 | private ParetoFrontScatterPlot ResultsScatterPlot {
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| 248 | get { return (ParetoFrontScatterPlot)Results[ScatterPlotResultName].Value; }
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[15045] | 249 | set { Results[ScatterPlotResultName].Value = value; }
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| 250 | }
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| 251 | #endregion
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| 252 |
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| 253 | #region Constructors
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| 254 | public MOCMAEvolutionStrategy() {
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| 255 | Parameters.Add(new FixedValueParameter<IntValue>(MaximumRuntimeName, "The maximum runtime in seconds after which the algorithm stops. Use -1 to specify no limit for the runtime", new IntValue(3600)));
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| 256 | Parameters.Add(new FixedValueParameter<IntValue>(SeedName, "The random seed used to initialize the new pseudo random number generator.", new IntValue(0)));
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| 257 | Parameters.Add(new FixedValueParameter<BoolValue>(SetSeedRandomlyName, "True if the random seed should be set to a random value, otherwise false.", new BoolValue(true)));
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| 258 | Parameters.Add(new FixedValueParameter<IntValue>(PopulationSizeName, "λ (lambda) - the size of the offspring population.", new IntValue(20)));
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| 259 | Parameters.Add(new ValueParameter<DoubleArray>(InitialSigmaName, "The initial sigma can be a single value or a value for each dimension. All values need to be > 0.", new DoubleArray(new[] { 0.5 })));
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| 260 | Parameters.Add(new FixedValueParameter<IntValue>(MaximumGenerationsName, "The maximum number of generations which should be processed.", new IntValue(1000)));
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| 261 | Parameters.Add(new FixedValueParameter<IntValue>(MaximumEvaluatedSolutionsName, "The maximum number of evaluated solutions that should be computed.", new IntValue(int.MaxValue)));
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| 262 | var set = new ItemSet<IIndicator> { new HypervolumeIndicator(), new CrowdingIndicator(), new MinimalDistanceIndicator() };
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| 263 | Parameters.Add(new ConstrainedValueParameter<IIndicator>(IndicatorName, "The selection mechanism on non-dominated solutions", set, set.First()));
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| 264 | }
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| 265 |
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| 266 | [StorableConstructor]
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| 267 | protected MOCMAEvolutionStrategy(bool deserializing) : base(deserializing) { }
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| 268 |
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| 269 | protected MOCMAEvolutionStrategy(MOCMAEvolutionStrategy original, Cloner cloner) : base(original, cloner) {
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| 270 | random = cloner.Clone(original.random);
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| 271 | gauss = cloner.Clone(original.gauss);
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[15089] | 272 | solutions = original.solutions != null ? original.solutions.Select(cloner.Clone).ToArray() : null;
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[15045] | 273 | stepSizeLearningRate = original.stepSizeLearningRate;
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| 274 | stepSizeDampeningFactor = original.stepSizeDampeningFactor;
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| 275 | targetSuccessProbability = original.targetSuccessProbability;
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| 276 | evolutionPathLearningRate = original.evolutionPathLearningRate;
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| 277 | covarianceMatrixLearningRate = original.covarianceMatrixLearningRate;
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| 278 | covarianceMatrixUnlearningRate = original.covarianceMatrixUnlearningRate;
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| 279 | successThreshold = original.successThreshold;
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| 280 | }
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| 281 |
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| 282 | public override IDeepCloneable Clone(Cloner cloner) { return new MOCMAEvolutionStrategy(this, cloner); }
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| 283 | #endregion
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| 284 |
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| 285 | #region Initialization
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| 286 | protected override void Initialize(CancellationToken cancellationToken) {
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| 287 | if (SetSeedRandomly) Seed = new System.Random().Next();
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| 288 | random.Reset(Seed);
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| 289 | gauss = new NormalDistributedRandom(random, 0, 1);
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| 290 |
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| 291 | InitResults();
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| 292 | InitStrategy();
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| 293 | InitSolutions();
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| 294 | Analyze();
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| 295 |
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| 296 | ResultsIterations = 1;
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| 297 | }
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| 298 | private Individual InitializeIndividual(RealVector x) {
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| 299 | var zeros = new RealVector(x.Length);
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| 300 | var c = new double[x.Length, x.Length];
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| 301 | var sigma = InitialSigma.Max();
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| 302 | for (var i = 0; i < x.Length; i++) {
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| 303 | var d = InitialSigma[i % InitialSigma.Length] / sigma;
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| 304 | c[i, i] = d * d;
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| 305 | }
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| 306 | return new Individual(x, targetSuccessProbability, sigma, zeros, c, this);
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| 307 | }
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| 308 | private void InitSolutions() {
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| 309 | solutions = new Individual[PopulationSize];
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| 310 | for (var i = 0; i < PopulationSize; i++) {
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| 311 | var x = new RealVector(Problem.Encoding.Length); // Uniform distibution in all dimensions assumed.
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| 312 | var bounds = Problem.Encoding.Bounds;
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| 313 | for (var j = 0; j < Problem.Encoding.Length; j++) {
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| 314 | var dim = j % bounds.Rows;
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| 315 | x[j] = random.NextDouble() * (bounds[dim, 1] - bounds[dim, 0]) + bounds[dim, 0];
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| 316 | }
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| 317 | solutions[i] = InitializeIndividual(x);
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| 318 | PenalizeEvaluate(solutions[i]);
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| 319 | }
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[15205] | 320 | ResultsEvaluations += solutions.Length;
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[15045] | 321 | }
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| 322 | private void InitStrategy() {
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| 323 | const int lambda = 1;
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| 324 | double n = Problem.Encoding.Length;
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| 325 | targetSuccessProbability = 1.0 / (5.0 + Math.Sqrt(lambda) / 2.0);
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| 326 | stepSizeDampeningFactor = 1.0 + n / (2.0 * lambda);
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| 327 | stepSizeLearningRate = targetSuccessProbability * lambda / (2.0 + targetSuccessProbability * lambda);
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| 328 | evolutionPathLearningRate = 2.0 / (n + 2.0);
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| 329 | covarianceMatrixLearningRate = 2.0 / (n * n + 6.0);
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| 330 | covarianceMatrixUnlearningRate = 0.4 / (Math.Pow(n, 1.6) + 1);
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| 331 | successThreshold = 0.44;
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| 332 | }
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| 333 | private void InitResults() {
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| 334 | Results.Add(new Result(IterationsResultName, "The number of gererations evaluated", new IntValue(0)));
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| 335 | Results.Add(new Result(EvaluationsResultName, "The number of function evaltions performed", new IntValue(0)));
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| 336 | Results.Add(new Result(HypervolumeResultName, "The hypervolume of the current front considering the Referencepoint defined in the Problem", new DoubleValue(0.0)));
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| 337 | Results.Add(new Result(BestHypervolumeResultName, "The best hypervolume of the current run considering the Referencepoint defined in the Problem", new DoubleValue(0.0)));
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| 338 | Results.Add(new Result(BestKnownHypervolumeResultName, "The best knwon hypervolume considering the Referencepoint defined in the Problem", new DoubleValue(double.NaN)));
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| 339 | Results.Add(new Result(DifferenceToBestKnownHypervolumeResultName, "The difference between the current and the best known hypervolume", new DoubleValue(double.NaN)));
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| 340 | Results.Add(new Result(GenerationalDistanceResultName, "The generational distance to an optimal pareto front defined in the Problem", new DoubleValue(double.NaN)));
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| 341 | Results.Add(new Result(InvertedGenerationalDistanceResultName, "The inverted generational distance to an optimal pareto front defined in the Problem", new DoubleValue(double.NaN)));
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| 342 | Results.Add(new Result(CrowdingResultName, "The average crowding value for the current front (excluding infinities)", new DoubleValue(0.0)));
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| 343 | Results.Add(new Result(SpacingResultName, "The spacing for the current front (excluding infinities)", new DoubleValue(0.0)));
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| 344 |
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| 345 | var table = new DataTable("QualityIndicators");
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| 346 | table.Rows.Add(new DataRow(BestHypervolumeResultName));
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| 347 | table.Rows.Add(new DataRow(HypervolumeResultName));
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| 348 | table.Rows.Add(new DataRow(CrowdingResultName));
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| 349 | table.Rows.Add(new DataRow(GenerationalDistanceResultName));
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| 350 | table.Rows.Add(new DataRow(InvertedGenerationalDistanceResultName));
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| 351 | table.Rows.Add(new DataRow(DifferenceToBestKnownHypervolumeResultName));
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| 352 | table.Rows.Add(new DataRow(SpacingResultName));
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| 353 | Results.Add(new Result(TimetableResultName, "Different quality meassures in a timeseries", table));
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| 354 | Results.Add(new Result(CurrentFrontResultName, "The current front", new DoubleMatrix()));
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[15203] | 355 | Results.Add(new Result(ScatterPlotResultName, "A scatterplot displaying the evaluated solutions and (if available) the analytically optimal front", new ParetoFrontScatterPlot()));
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[15045] | 356 |
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| 357 | var problem = Problem as MultiObjectiveTestFunctionProblem;
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| 358 | if (problem == null) return;
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| 359 | if (problem.BestKnownFront != null) {
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| 360 | ResultsBestKnownHypervolume = Hypervolume.Calculate(problem.BestKnownFront.ToJaggedArray(), problem.TestFunction.ReferencePoint(problem.Objectives), Problem.Maximization);
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| 361 | ResultsDifferenceBestKnownHypervolume = ResultsBestKnownHypervolume;
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| 362 | }
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[15203] | 363 | ResultsScatterPlot = new ParetoFrontScatterPlot(new double[0][], new double[0][], problem.BestKnownFront.ToJaggedArray(), problem.Objectives, problem.ProblemSize);
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[15045] | 364 | }
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| 365 | #endregion
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| 366 |
|
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| 367 | #region Mainloop
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| 368 | protected override void Run(CancellationToken cancellationToken) {
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[15335] | 369 | while (ResultsIterations < MaximumGenerations && ResultsEvaluations < MaximumEvaluatedSolutions) {
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[15045] | 370 | try {
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| 371 | Iterate();
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| 372 | ResultsIterations++;
|
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| 373 | cancellationToken.ThrowIfCancellationRequested();
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[15176] | 374 | } finally {
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[15045] | 375 | Analyze();
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| 376 | }
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| 377 | }
|
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| 378 | }
|
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| 379 | private void Iterate() {
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| 380 | var offspring = solutions.Select(i => {
|
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| 381 | var o = new Individual(i);
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| 382 | o.Mutate(gauss);
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| 383 | PenalizeEvaluate(o);
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| 384 | return o;
|
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| 385 | });
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[15205] | 386 | ResultsEvaluations += solutions.Length;
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[15045] | 387 | var parents = solutions.Concat(offspring).ToArray();
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| 388 | SelectParents(parents, solutions.Length);
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| 389 | UpdatePopulation(parents);
|
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| 390 | }
|
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| 391 | protected override void OnExecutionTimeChanged() {
|
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| 392 | base.OnExecutionTimeChanged();
|
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| 393 | if (CancellationTokenSource == null) return;
|
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| 394 | if (MaximumRuntime == -1) return;
|
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| 395 | if (ExecutionTime.TotalSeconds > MaximumRuntime) CancellationTokenSource.Cancel();
|
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| 396 | }
|
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| 397 | #endregion
|
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| 398 |
|
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| 399 | #region Evaluation
|
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| 400 | private void PenalizeEvaluate(Individual individual) {
|
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| 401 | if (IsFeasable(individual.Mean)) {
|
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| 402 | individual.Fitness = Evaluate(individual.Mean);
|
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| 403 | individual.PenalizedFitness = individual.Fitness;
|
---|
| 404 | } else {
|
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| 405 | var t = ClosestFeasible(individual.Mean);
|
---|
| 406 | individual.Fitness = Evaluate(t);
|
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| 407 | individual.PenalizedFitness = Penalize(individual.Mean, t, individual.Fitness);
|
---|
| 408 | }
|
---|
| 409 | }
|
---|
| 410 | private double[] Evaluate(RealVector x) {
|
---|
| 411 | var res = Problem.Evaluate(new SingleEncodingIndividual(Problem.Encoding, new Scope { Variables = { new Variable(Problem.Encoding.Name, x) } }), random);
|
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| 412 | return res;
|
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| 413 | }
|
---|
| 414 | private double[] Penalize(RealVector x, RealVector t, IEnumerable<double> fitness) {
|
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| 415 | var penalty = x.Zip(t, (a, b) => (a - b) * (a - b)).Sum() * 1E-6;
|
---|
| 416 | return fitness.Select((v, i) => Problem.Maximization[i] ? v - penalty : v + penalty).ToArray();
|
---|
| 417 | }
|
---|
| 418 | private RealVector ClosestFeasible(RealVector x) {
|
---|
| 419 | var bounds = Problem.Encoding.Bounds;
|
---|
| 420 | var r = new RealVector(x.Length);
|
---|
| 421 | for (var i = 0; i < x.Length; i++) {
|
---|
| 422 | var dim = i % bounds.Rows;
|
---|
| 423 | r[i] = Math.Min(Math.Max(bounds[dim, 0], x[i]), bounds[dim, 1]);
|
---|
| 424 | }
|
---|
| 425 | return r;
|
---|
| 426 | }
|
---|
| 427 | private bool IsFeasable(RealVector offspring) {
|
---|
| 428 | var bounds = Problem.Encoding.Bounds;
|
---|
| 429 | for (var i = 0; i < offspring.Length; i++) {
|
---|
| 430 | var dim = i % bounds.Rows;
|
---|
| 431 | if (bounds[dim, 0] > offspring[i] || offspring[i] > bounds[dim, 1]) return false;
|
---|
| 432 | }
|
---|
| 433 | return true;
|
---|
| 434 | }
|
---|
| 435 | #endregion
|
---|
| 436 |
|
---|
| 437 | private void SelectParents(IReadOnlyList<Individual> parents, int length) {
|
---|
| 438 | //perform a nondominated sort to assign the rank to every element
|
---|
[15089] | 439 | int[] ranks;
|
---|
| 440 | var fronts = DominationCalculator<Individual>.CalculateAllParetoFronts(parents.ToArray(), parents.Select(i => i.PenalizedFitness).ToArray(), Problem.Maximization, out ranks);
|
---|
[15045] | 441 |
|
---|
| 442 | //deselect the highest rank fronts until we would end up with less or equal mu elements
|
---|
| 443 | var rank = fronts.Count - 1;
|
---|
| 444 | var popSize = parents.Count;
|
---|
| 445 | while (popSize - fronts[rank].Count >= length) {
|
---|
| 446 | var front = fronts[rank];
|
---|
[15089] | 447 | foreach (var i in front) i.Item1.Selected = false;
|
---|
[15045] | 448 | popSize -= front.Count;
|
---|
| 449 | rank--;
|
---|
| 450 | }
|
---|
| 451 |
|
---|
| 452 | //now use the indicator to deselect the approximatingly worst elements of the last selected front
|
---|
[15089] | 453 | var front1 = fronts[rank].OrderBy(x => x.Item1.PenalizedFitness[0]).ToList();
|
---|
[15045] | 454 | for (; popSize > length; popSize--) {
|
---|
[15089] | 455 | var lc = Indicator.LeastContributer(front1.Select(i => i.Item1).ToArray(), Problem);
|
---|
| 456 | front1[lc].Item1.Selected = false;
|
---|
[15045] | 457 | front1.Swap(lc, front1.Count - 1);
|
---|
| 458 | front1.RemoveAt(front1.Count - 1);
|
---|
| 459 | }
|
---|
| 460 | }
|
---|
| 461 |
|
---|
| 462 | private void UpdatePopulation(IReadOnlyList<Individual> parents) {
|
---|
| 463 | foreach (var p in parents.Skip(solutions.Length).Where(i => i.Selected))
|
---|
| 464 | p.UpdateAsOffspring();
|
---|
| 465 | for (var i = 0; i < solutions.Length; i++)
|
---|
| 466 | if (parents[i].Selected)
|
---|
| 467 | parents[i].UpdateAsParent(parents[i + solutions.Length].Selected);
|
---|
| 468 | solutions = parents.Where(p => p.Selected).ToArray();
|
---|
| 469 | }
|
---|
| 470 |
|
---|
| 471 | private void Analyze() {
|
---|
[15203] | 472 | ResultsScatterPlot = new ParetoFrontScatterPlot(solutions.Select(x => x.Fitness).ToArray(), solutions.Select(x => x.Mean.ToArray()).ToArray(), ResultsScatterPlot.ParetoFront, ResultsScatterPlot.Objectives, ResultsScatterPlot.ProblemSize);
|
---|
[15045] | 473 | ResultsSolutions = solutions.Select(x => x.Mean.ToArray()).ToMatrix();
|
---|
| 474 |
|
---|
| 475 | var problem = Problem as MultiObjectiveTestFunctionProblem;
|
---|
| 476 | if (problem == null) return;
|
---|
| 477 |
|
---|
| 478 | var front = NonDominatedSelect.GetDominatingVectors(solutions.Select(x => x.Fitness), problem.ReferencePoint.CloneAsArray(), Problem.Maximization, true).ToArray();
|
---|
| 479 | if (front.Length == 0) return;
|
---|
| 480 | var bounds = problem.Bounds.CloneAsMatrix();
|
---|
| 481 | ResultsCrowding = Crowding.Calculate(front, bounds);
|
---|
| 482 | ResultsSpacing = Spacing.Calculate(front);
|
---|
| 483 | ResultsGenerationalDistance = problem.BestKnownFront != null ? GenerationalDistance.Calculate(front, problem.BestKnownFront.ToJaggedArray(), 1) : double.NaN;
|
---|
| 484 | ResultsInvertedGenerationalDistance = problem.BestKnownFront != null ? InvertedGenerationalDistance.Calculate(front, problem.BestKnownFront.ToJaggedArray(), 1) : double.NaN;
|
---|
| 485 | ResultsHypervolume = Hypervolume.Calculate(front, problem.ReferencePoint.CloneAsArray(), Problem.Maximization);
|
---|
| 486 | ResultsBestHypervolume = Math.Max(ResultsHypervolume, ResultsBestHypervolume);
|
---|
| 487 | ResultsDifferenceBestKnownHypervolume = ResultsBestKnownHypervolume - ResultsBestHypervolume;
|
---|
| 488 |
|
---|
| 489 | ResultsBestHypervolumeDataLine.Values.Add(ResultsBestHypervolume);
|
---|
| 490 | ResultsHypervolumeDataLine.Values.Add(ResultsHypervolume);
|
---|
| 491 | ResultsCrowdingDataLine.Values.Add(ResultsCrowding);
|
---|
| 492 | ResultsGenerationalDistanceDataLine.Values.Add(ResultsGenerationalDistance);
|
---|
| 493 | ResultsInvertedGenerationalDistanceDataLine.Values.Add(ResultsInvertedGenerationalDistance);
|
---|
| 494 | ResultsSpacingDataLine.Values.Add(ResultsSpacing);
|
---|
| 495 | ResultsHypervolumeDifferenceDataLine.Values.Add(ResultsDifferenceBestKnownHypervolume);
|
---|
| 496 |
|
---|
| 497 | Problem.Analyze(
|
---|
| 498 | solutions.Select(x => (Optimization.Individual)new SingleEncodingIndividual(Problem.Encoding, new Scope { Variables = { new Variable(Problem.Encoding.Name, x.Mean) } })).ToArray(),
|
---|
| 499 | solutions.Select(x => x.Fitness).ToArray(),
|
---|
| 500 | Results,
|
---|
| 501 | random);
|
---|
| 502 | }
|
---|
| 503 | }
|
---|
| 504 | }
|
---|