[2] | 1 | #region License Information
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| 2 | /* HeuristicLab
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[2851] | 3 | * Copyright (C) 2002-2010 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
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[2] | 4 | *
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| 5 | * This file is part of HeuristicLab.
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| 6 | *
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| 7 | * HeuristicLab is free software: you can redistribute it and/or modify
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| 8 | * it under the terms of the GNU General Public License as published by
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| 9 | * the Free Software Foundation, either version 3 of the License, or
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| 10 | * (at your option) any later version.
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| 11 | *
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| 12 | * HeuristicLab is distributed in the hope that it will be useful,
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| 13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 15 | * GNU General Public License for more details.
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| 16 | *
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| 17 | * You should have received a copy of the GNU General Public License
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| 18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
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| 19 | */
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| 20 | #endregion
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| 21 |
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[2865] | 22 | using System;
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| 23 | using System.Linq;
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[4068] | 24 | using HeuristicLab.Analysis;
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[3376] | 25 | using HeuristicLab.Common;
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[2] | 26 | using HeuristicLab.Core;
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| 27 | using HeuristicLab.Data;
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[2851] | 28 | using HeuristicLab.Optimization;
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[3021] | 29 | using HeuristicLab.Optimization.Operators;
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[2852] | 30 | using HeuristicLab.Parameters;
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| 31 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
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[2882] | 32 | using HeuristicLab.PluginInfrastructure;
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[3368] | 33 | using HeuristicLab.Random;
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[2] | 34 |
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[3196] | 35 | namespace HeuristicLab.Algorithms.GeneticAlgorithm {
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[1153] | 36 | /// <summary>
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[3198] | 37 | /// A genetic algorithm.
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[1153] | 38 | /// </summary>
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[3198] | 39 | [Item("Genetic Algorithm", "A genetic algorithm.")]
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[2851] | 40 | [Creatable("Algorithms")]
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[3017] | 41 | [StorableClass]
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[4437] | 42 | public sealed class GeneticAlgorithm : EngineAlgorithm, IStorableContent {
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| 43 | public string Filename { get; set; }
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| 44 |
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[2986] | 45 | #region Problem Properties
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| 46 | public override Type ProblemType {
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| 47 | get { return typeof(ISingleObjectiveProblem); }
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| 48 | }
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| 49 | public new ISingleObjectiveProblem Problem {
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| 50 | get { return (ISingleObjectiveProblem)base.Problem; }
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| 51 | set { base.Problem = value; }
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| 52 | }
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| 53 | #endregion
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[2852] | 54 |
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[2986] | 55 | #region Parameter Properties
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[3048] | 56 | private ValueParameter<IntValue> SeedParameter {
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| 57 | get { return (ValueParameter<IntValue>)Parameters["Seed"]; }
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[2986] | 58 | }
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[3048] | 59 | private ValueParameter<BoolValue> SetSeedRandomlyParameter {
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| 60 | get { return (ValueParameter<BoolValue>)Parameters["SetSeedRandomly"]; }
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[2986] | 61 | }
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[3048] | 62 | private ValueParameter<IntValue> PopulationSizeParameter {
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| 63 | get { return (ValueParameter<IntValue>)Parameters["PopulationSize"]; }
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[2986] | 64 | }
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| 65 | private ConstrainedValueParameter<ISelector> SelectorParameter {
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| 66 | get { return (ConstrainedValueParameter<ISelector>)Parameters["Selector"]; }
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| 67 | }
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| 68 | private ConstrainedValueParameter<ICrossover> CrossoverParameter {
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| 69 | get { return (ConstrainedValueParameter<ICrossover>)Parameters["Crossover"]; }
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| 70 | }
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[3095] | 71 | private ValueParameter<PercentValue> MutationProbabilityParameter {
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| 72 | get { return (ValueParameter<PercentValue>)Parameters["MutationProbability"]; }
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[2986] | 73 | }
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| 74 | private OptionalConstrainedValueParameter<IManipulator> MutatorParameter {
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| 75 | get { return (OptionalConstrainedValueParameter<IManipulator>)Parameters["Mutator"]; }
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| 76 | }
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[3048] | 77 | private ValueParameter<IntValue> ElitesParameter {
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| 78 | get { return (ValueParameter<IntValue>)Parameters["Elites"]; }
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[2986] | 79 | }
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[3658] | 80 | private ValueParameter<MultiAnalyzer> AnalyzerParameter {
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| 81 | get { return (ValueParameter<MultiAnalyzer>)Parameters["Analyzer"]; }
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[3616] | 82 | }
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[3048] | 83 | private ValueParameter<IntValue> MaximumGenerationsParameter {
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| 84 | get { return (ValueParameter<IntValue>)Parameters["MaximumGenerations"]; }
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[2986] | 85 | }
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| 86 | #endregion
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[2865] | 87 |
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[2986] | 88 | #region Properties
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[3048] | 89 | public IntValue Seed {
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[2986] | 90 | get { return SeedParameter.Value; }
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| 91 | set { SeedParameter.Value = value; }
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| 92 | }
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[3048] | 93 | public BoolValue SetSeedRandomly {
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[2986] | 94 | get { return SetSeedRandomlyParameter.Value; }
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| 95 | set { SetSeedRandomlyParameter.Value = value; }
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| 96 | }
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[3048] | 97 | public IntValue PopulationSize {
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[2986] | 98 | get { return PopulationSizeParameter.Value; }
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| 99 | set { PopulationSizeParameter.Value = value; }
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| 100 | }
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| 101 | public ISelector Selector {
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| 102 | get { return SelectorParameter.Value; }
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| 103 | set { SelectorParameter.Value = value; }
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| 104 | }
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| 105 | public ICrossover Crossover {
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| 106 | get { return CrossoverParameter.Value; }
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| 107 | set { CrossoverParameter.Value = value; }
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| 108 | }
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[3095] | 109 | public PercentValue MutationProbability {
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[2986] | 110 | get { return MutationProbabilityParameter.Value; }
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| 111 | set { MutationProbabilityParameter.Value = value; }
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| 112 | }
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| 113 | public IManipulator Mutator {
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| 114 | get { return MutatorParameter.Value; }
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| 115 | set { MutatorParameter.Value = value; }
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| 116 | }
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[3048] | 117 | public IntValue Elites {
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[2986] | 118 | get { return ElitesParameter.Value; }
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| 119 | set { ElitesParameter.Value = value; }
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| 120 | }
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[3658] | 121 | public MultiAnalyzer Analyzer {
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[3616] | 122 | get { return AnalyzerParameter.Value; }
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| 123 | set { AnalyzerParameter.Value = value; }
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| 124 | }
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[3048] | 125 | public IntValue MaximumGenerations {
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[2986] | 126 | get { return MaximumGenerationsParameter.Value; }
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| 127 | set { MaximumGenerationsParameter.Value = value; }
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| 128 | }
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| 129 | private RandomCreator RandomCreator {
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| 130 | get { return (RandomCreator)OperatorGraph.InitialOperator; }
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| 131 | }
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[3023] | 132 | private SolutionsCreator SolutionsCreator {
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| 133 | get { return (SolutionsCreator)RandomCreator.Successor; }
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[2986] | 134 | }
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[3198] | 135 | private GeneticAlgorithmMainLoop GeneticAlgorithmMainLoop {
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| 136 | get { return (GeneticAlgorithmMainLoop)SolutionsCreator.Successor; }
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[2986] | 137 | }
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[3680] | 138 | [Storable]
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[3662] | 139 | private BestAverageWorstQualityAnalyzer qualityAnalyzer;
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[2986] | 140 | #endregion
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[2852] | 141 |
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[3198] | 142 | public GeneticAlgorithm()
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[2986] | 143 | : base() {
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[3048] | 144 | Parameters.Add(new ValueParameter<IntValue>("Seed", "The random seed used to initialize the new pseudo random number generator.", new IntValue(0)));
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| 145 | Parameters.Add(new ValueParameter<BoolValue>("SetSeedRandomly", "True if the random seed should be set to a random value, otherwise false.", new BoolValue(true)));
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| 146 | Parameters.Add(new ValueParameter<IntValue>("PopulationSize", "The size of the population of solutions.", new IntValue(100)));
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[2986] | 147 | Parameters.Add(new ConstrainedValueParameter<ISelector>("Selector", "The operator used to select solutions for reproduction."));
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| 148 | Parameters.Add(new ConstrainedValueParameter<ICrossover>("Crossover", "The operator used to cross solutions."));
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[3095] | 149 | Parameters.Add(new ValueParameter<PercentValue>("MutationProbability", "The probability that the mutation operator is applied on a solution.", new PercentValue(0.05)));
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[2986] | 150 | Parameters.Add(new OptionalConstrainedValueParameter<IManipulator>("Mutator", "The operator used to mutate solutions."));
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[3048] | 151 | Parameters.Add(new ValueParameter<IntValue>("Elites", "The numer of elite solutions which are kept in each generation.", new IntValue(1)));
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[3658] | 152 | Parameters.Add(new ValueParameter<MultiAnalyzer>("Analyzer", "The operator used to analyze each generation.", new MultiAnalyzer()));
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[3048] | 153 | Parameters.Add(new ValueParameter<IntValue>("MaximumGenerations", "The maximum number of generations which should be processed.", new IntValue(1000)));
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[2] | 154 |
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[2986] | 155 | RandomCreator randomCreator = new RandomCreator();
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[3023] | 156 | SolutionsCreator solutionsCreator = new SolutionsCreator();
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[3198] | 157 | GeneticAlgorithmMainLoop geneticAlgorithmMainLoop = new GeneticAlgorithmMainLoop();
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[2986] | 158 | OperatorGraph.InitialOperator = randomCreator;
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[2882] | 159 |
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[2986] | 160 | randomCreator.RandomParameter.ActualName = "Random";
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| 161 | randomCreator.SeedParameter.ActualName = SeedParameter.Name;
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| 162 | randomCreator.SeedParameter.Value = null;
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| 163 | randomCreator.SetSeedRandomlyParameter.ActualName = SetSeedRandomlyParameter.Name;
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| 164 | randomCreator.SetSeedRandomlyParameter.Value = null;
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[3023] | 165 | randomCreator.Successor = solutionsCreator;
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[2] | 166 |
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[3023] | 167 | solutionsCreator.NumberOfSolutionsParameter.ActualName = PopulationSizeParameter.Name;
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[3198] | 168 | solutionsCreator.Successor = geneticAlgorithmMainLoop;
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[2] | 169 |
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[3198] | 170 | geneticAlgorithmMainLoop.SelectorParameter.ActualName = SelectorParameter.Name;
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| 171 | geneticAlgorithmMainLoop.CrossoverParameter.ActualName = CrossoverParameter.Name;
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| 172 | geneticAlgorithmMainLoop.ElitesParameter.ActualName = ElitesParameter.Name;
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| 173 | geneticAlgorithmMainLoop.MaximumGenerationsParameter.ActualName = MaximumGenerationsParameter.Name;
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| 174 | geneticAlgorithmMainLoop.MutatorParameter.ActualName = MutatorParameter.Name;
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| 175 | geneticAlgorithmMainLoop.MutationProbabilityParameter.ActualName = MutationProbabilityParameter.Name;
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| 176 | geneticAlgorithmMainLoop.RandomParameter.ActualName = RandomCreator.RandomParameter.ActualName;
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[3616] | 177 | geneticAlgorithmMainLoop.AnalyzerParameter.ActualName = AnalyzerParameter.Name;
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[3198] | 178 | geneticAlgorithmMainLoop.ResultsParameter.ActualName = "Results";
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[2] | 179 |
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[3680] | 180 | foreach (ISelector selector in ApplicationManager.Manager.GetInstances<ISelector>().Where(x => !(x is IMultiObjectiveSelector)).OrderBy(x => x.Name))
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| 181 | SelectorParameter.ValidValues.Add(selector);
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| 182 | ISelector proportionalSelector = SelectorParameter.ValidValues.FirstOrDefault(x => x.GetType().Name.Equals("ProportionalSelector"));
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| 183 | if (proportionalSelector != null) SelectorParameter.Value = proportionalSelector;
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| 184 | ParameterizeSelectors();
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| 185 |
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| 186 | qualityAnalyzer = new BestAverageWorstQualityAnalyzer();
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| 187 | ParameterizeAnalyzers();
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| 188 | UpdateAnalyzers();
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| 189 |
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[3280] | 190 | Initialize();
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[2986] | 191 | }
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| 192 | [StorableConstructor]
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[3280] | 193 | private GeneticAlgorithm(bool deserializing) : base(deserializing) { }
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[4722] | 194 | [StorableHook(HookType.AfterDeserialization)]
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| 195 | private void AfterDeserialization() {
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| 196 | Initialize();
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| 197 | }
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[2] | 198 |
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[4722] | 199 | private GeneticAlgorithm(GeneticAlgorithm original, Cloner cloner)
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| 200 | : base(original, cloner) {
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| 201 | qualityAnalyzer = cloner.Clone(original.qualityAnalyzer);
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| 202 | Initialize();
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| 203 | }
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[2986] | 204 | public override IDeepCloneable Clone(Cloner cloner) {
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[4722] | 205 | return new GeneticAlgorithm(this, cloner);
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[2986] | 206 | }
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[2882] | 207 |
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[3275] | 208 | public override void Prepare() {
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| 209 | if (Problem != null) base.Prepare();
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[3188] | 210 | }
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| 211 |
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[2986] | 212 | #region Events
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| 213 | protected override void OnProblemChanged() {
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| 214 | ParameterizeStochasticOperator(Problem.SolutionCreator);
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| 215 | ParameterizeStochasticOperator(Problem.Evaluator);
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| 216 | foreach (IOperator op in Problem.Operators) ParameterizeStochasticOperator(op);
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[3023] | 217 | ParameterizeSolutionsCreator();
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[3198] | 218 | ParameterizeGeneticAlgorithmMainLoop();
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[2986] | 219 | ParameterizeSelectors();
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[3616] | 220 | ParameterizeAnalyzers();
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[3750] | 221 | ParameterizeIterationBasedOperators();
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[2986] | 222 | UpdateCrossovers();
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| 223 | UpdateMutators();
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[3616] | 224 | UpdateAnalyzers();
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[2986] | 225 | Problem.Evaluator.QualityParameter.ActualNameChanged += new EventHandler(Evaluator_QualityParameter_ActualNameChanged);
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| 226 | base.OnProblemChanged();
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| 227 | }
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[3139] | 228 |
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[2986] | 229 | protected override void Problem_SolutionCreatorChanged(object sender, EventArgs e) {
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| 230 | ParameterizeStochasticOperator(Problem.SolutionCreator);
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[3023] | 231 | ParameterizeSolutionsCreator();
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[2986] | 232 | base.Problem_SolutionCreatorChanged(sender, e);
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| 233 | }
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| 234 | protected override void Problem_EvaluatorChanged(object sender, EventArgs e) {
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| 235 | ParameterizeStochasticOperator(Problem.Evaluator);
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[3023] | 236 | ParameterizeSolutionsCreator();
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[3198] | 237 | ParameterizeGeneticAlgorithmMainLoop();
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[2986] | 238 | ParameterizeSelectors();
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[3616] | 239 | ParameterizeAnalyzers();
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[2986] | 240 | Problem.Evaluator.QualityParameter.ActualNameChanged += new EventHandler(Evaluator_QualityParameter_ActualNameChanged);
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| 241 | base.Problem_EvaluatorChanged(sender, e);
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| 242 | }
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| 243 | protected override void Problem_OperatorsChanged(object sender, EventArgs e) {
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| 244 | foreach (IOperator op in Problem.Operators) ParameterizeStochasticOperator(op);
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[3750] | 245 | ParameterizeIterationBasedOperators();
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[2986] | 246 | UpdateCrossovers();
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| 247 | UpdateMutators();
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[3616] | 248 | UpdateAnalyzers();
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[2986] | 249 | base.Problem_OperatorsChanged(sender, e);
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| 250 | }
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| 251 | private void ElitesParameter_ValueChanged(object sender, EventArgs e) {
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| 252 | Elites.ValueChanged += new EventHandler(Elites_ValueChanged);
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| 253 | ParameterizeSelectors();
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| 254 | }
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| 255 | private void Elites_ValueChanged(object sender, EventArgs e) {
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| 256 | ParameterizeSelectors();
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| 257 | }
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| 258 | private void PopulationSizeParameter_ValueChanged(object sender, EventArgs e) {
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| 259 | PopulationSize.ValueChanged += new EventHandler(PopulationSize_ValueChanged);
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| 260 | ParameterizeSelectors();
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| 261 | }
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| 262 | private void PopulationSize_ValueChanged(object sender, EventArgs e) {
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| 263 | ParameterizeSelectors();
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| 264 | }
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| 265 | private void Evaluator_QualityParameter_ActualNameChanged(object sender, EventArgs e) {
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[3198] | 266 | ParameterizeGeneticAlgorithmMainLoop();
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[2986] | 267 | ParameterizeSelectors();
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[3616] | 268 | ParameterizeAnalyzers();
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[2986] | 269 | }
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| 270 | #endregion
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[2852] | 271 |
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[2986] | 272 | #region Helpers
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[3280] | 273 | private void Initialize() {
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[2986] | 274 | PopulationSizeParameter.ValueChanged += new EventHandler(PopulationSizeParameter_ValueChanged);
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| 275 | PopulationSize.ValueChanged += new EventHandler(PopulationSize_ValueChanged);
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| 276 | ElitesParameter.ValueChanged += new EventHandler(ElitesParameter_ValueChanged);
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| 277 | Elites.ValueChanged += new EventHandler(Elites_ValueChanged);
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[3139] | 278 | if (Problem != null) {
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[2986] | 279 | Problem.Evaluator.QualityParameter.ActualNameChanged += new EventHandler(Evaluator_QualityParameter_ActualNameChanged);
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[3139] | 280 | }
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[2986] | 281 | }
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[2852] | 282 |
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[3023] | 283 | private void ParameterizeSolutionsCreator() {
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| 284 | SolutionsCreator.EvaluatorParameter.ActualName = Problem.EvaluatorParameter.Name;
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| 285 | SolutionsCreator.SolutionCreatorParameter.ActualName = Problem.SolutionCreatorParameter.Name;
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[2986] | 286 | }
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[3198] | 287 | private void ParameterizeGeneticAlgorithmMainLoop() {
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| 288 | GeneticAlgorithmMainLoop.EvaluatorParameter.ActualName = Problem.EvaluatorParameter.Name;
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| 289 | GeneticAlgorithmMainLoop.MaximizationParameter.ActualName = Problem.MaximizationParameter.Name;
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| 290 | GeneticAlgorithmMainLoop.QualityParameter.ActualName = Problem.Evaluator.QualityParameter.ActualName;
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[2986] | 291 | }
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| 292 | private void ParameterizeStochasticOperator(IOperator op) {
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| 293 | if (op is IStochasticOperator)
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| 294 | ((IStochasticOperator)op).RandomParameter.ActualName = RandomCreator.RandomParameter.ActualName;
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| 295 | }
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| 296 | private void ParameterizeSelectors() {
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[3680] | 297 | foreach (ISelector selector in SelectorParameter.ValidValues) {
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[3048] | 298 | selector.CopySelected = new BoolValue(true);
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| 299 | selector.NumberOfSelectedSubScopesParameter.Value = new IntValue(2 * (PopulationSizeParameter.Value.Value - ElitesParameter.Value.Value));
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[2986] | 300 | ParameterizeStochasticOperator(selector);
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| 301 | }
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| 302 | if (Problem != null) {
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[3680] | 303 | foreach (ISingleObjectiveSelector selector in SelectorParameter.ValidValues.OfType<ISingleObjectiveSelector>()) {
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[2986] | 304 | selector.MaximizationParameter.ActualName = Problem.MaximizationParameter.Name;
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| 305 | selector.QualityParameter.ActualName = Problem.Evaluator.QualityParameter.ActualName;
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| 306 | }
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| 307 | }
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| 308 | }
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[3616] | 309 | private void ParameterizeAnalyzers() {
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| 310 | qualityAnalyzer.ResultsParameter.ActualName = "Results";
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| 311 | if (Problem != null) {
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| 312 | qualityAnalyzer.MaximizationParameter.ActualName = Problem.MaximizationParameter.Name;
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| 313 | qualityAnalyzer.QualityParameter.ActualName = Problem.Evaluator.QualityParameter.ActualName;
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[3662] | 314 | qualityAnalyzer.QualityParameter.Depth = 1;
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[3616] | 315 | qualityAnalyzer.BestKnownQualityParameter.ActualName = Problem.BestKnownQualityParameter.Name;
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| 316 | }
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| 317 | }
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[3750] | 318 | private void ParameterizeIterationBasedOperators() {
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| 319 | if (Problem != null) {
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| 320 | foreach (IIterationBasedOperator op in Problem.Operators.OfType<IIterationBasedOperator>()) {
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| 321 | op.IterationsParameter.ActualName = "Generations";
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| 322 | op.MaximumIterationsParameter.ActualName = "MaximumGenerations";
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| 323 | }
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| 324 | }
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| 325 | }
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[2986] | 326 | private void UpdateCrossovers() {
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[3303] | 327 | ICrossover oldCrossover = CrossoverParameter.Value;
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| 328 | CrossoverParameter.ValidValues.Clear();
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| 329 | foreach (ICrossover crossover in Problem.Operators.OfType<ICrossover>().OrderBy(x => x.Name))
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| 330 | CrossoverParameter.ValidValues.Add(crossover);
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| 331 | if (oldCrossover != null) {
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| 332 | ICrossover crossover = CrossoverParameter.ValidValues.FirstOrDefault(x => x.GetType() == oldCrossover.GetType());
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| 333 | if (crossover != null) CrossoverParameter.Value = crossover;
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[3076] | 334 | }
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[2986] | 335 | }
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| 336 | private void UpdateMutators() {
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[3303] | 337 | IManipulator oldMutator = MutatorParameter.Value;
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| 338 | MutatorParameter.ValidValues.Clear();
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| 339 | foreach (IManipulator mutator in Problem.Operators.OfType<IManipulator>().OrderBy(x => x.Name))
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| 340 | MutatorParameter.ValidValues.Add(mutator);
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| 341 | if (oldMutator != null) {
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| 342 | IManipulator mutator = MutatorParameter.ValidValues.FirstOrDefault(x => x.GetType() == oldMutator.GetType());
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| 343 | if (mutator != null) MutatorParameter.Value = mutator;
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[3076] | 344 | }
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[2986] | 345 | }
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[3616] | 346 | private void UpdateAnalyzers() {
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| 347 | Analyzer.Operators.Clear();
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| 348 | if (Problem != null) {
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[3816] | 349 | foreach (IAnalyzer analyzer in Problem.Operators.OfType<IAnalyzer>()) {
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[3663] | 350 | foreach (IScopeTreeLookupParameter param in analyzer.Parameters.OfType<IScopeTreeLookupParameter>())
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| 351 | param.Depth = 1;
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[3616] | 352 | Analyzer.Operators.Add(analyzer);
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[3662] | 353 | }
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[3616] | 354 | }
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[3799] | 355 | Analyzer.Operators.Add(qualityAnalyzer);
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[3616] | 356 | }
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[2986] | 357 | #endregion
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[2] | 358 | }
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| 359 | }
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