[8323] | 1 |
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| 2 | #region License Information
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| 3 | /* HeuristicLab
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[11171] | 4 | * Copyright (C) 2002-2014 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
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[8323] | 5 | *
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| 6 | * This file is part of HeuristicLab.
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| 7 | *
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| 8 | * HeuristicLab is free software: you can redistribute it and/or modify
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| 9 | * it under the terms of the GNU General Public License as published by
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| 10 | * the Free Software Foundation, either version 3 of the License, or
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| 11 | * (at your option) any later version.
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| 12 | *
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| 13 | * HeuristicLab is distributed in the hope that it will be useful,
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| 14 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 15 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 16 | * GNU General Public License for more details.
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| 17 | *
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| 18 | * You should have received a copy of the GNU General Public License
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| 19 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
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| 20 | */
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| 21 | #endregion
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| 22 |
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[8371] | 23 | using System;
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[9096] | 24 | using System.Linq;
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[8401] | 25 | using HeuristicLab.Algorithms.GradientDescent;
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[8323] | 26 | using HeuristicLab.Common;
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| 27 | using HeuristicLab.Core;
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| 28 | using HeuristicLab.Data;
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[8371] | 29 | using HeuristicLab.Operators;
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[8323] | 30 | using HeuristicLab.Optimization;
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| 31 | using HeuristicLab.Parameters;
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| 32 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
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[9096] | 33 | using HeuristicLab.PluginInfrastructure;
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[8323] | 34 | using HeuristicLab.Problems.DataAnalysis;
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| 35 |
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[8371] | 36 | namespace HeuristicLab.Algorithms.DataAnalysis {
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[8323] | 37 | /// <summary>
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| 38 | ///Gaussian process regression data analysis algorithm.
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| 39 | /// </summary>
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| 40 | [Item("Gaussian Process Regression", "Gaussian process regression data analysis algorithm.")]
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| 41 | [Creatable("Data Analysis")]
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| 42 | [StorableClass]
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[9096] | 43 | public sealed class GaussianProcessRegression : GaussianProcessBase, IStorableContent {
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[8371] | 44 | public string Filename { get; set; }
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| 45 |
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| 46 | public override Type ProblemType { get { return typeof(IRegressionProblem); } }
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| 47 | public new IRegressionProblem Problem {
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| 48 | get { return (IRegressionProblem)base.Problem; }
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| 49 | set { base.Problem = value; }
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| 50 | }
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| 51 |
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[9096] | 52 | private const string ModelParameterName = "Model";
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[8323] | 53 |
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| 54 | #region parameter properties
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[9098] | 55 | public IConstrainedValueParameter<IGaussianProcessRegressionModelCreator> GaussianProcessModelCreatorParameter {
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[9096] | 56 | get { return (IConstrainedValueParameter<IGaussianProcessRegressionModelCreator>)Parameters[ModelCreatorParameterName]; }
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[8323] | 57 | }
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[9098] | 58 | public IFixedValueParameter<GaussianProcessRegressionSolutionCreator> GaussianProcessSolutionCreatorParameter {
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[9096] | 59 | get { return (IFixedValueParameter<GaussianProcessRegressionSolutionCreator>)Parameters[SolutionCreatorParameterName]; }
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[8323] | 60 | }
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| 61 | #endregion
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[8419] | 62 |
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[8323] | 63 | [StorableConstructor]
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| 64 | private GaussianProcessRegression(bool deserializing) : base(deserializing) { }
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| 65 | private GaussianProcessRegression(GaussianProcessRegression original, Cloner cloner)
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| 66 | : base(original, cloner) {
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[9096] | 67 | RegisterEventHandlers();
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[8323] | 68 | }
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| 69 | public GaussianProcessRegression()
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[9096] | 70 | : base(new RegressionProblem()) {
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[8396] | 71 | this.name = ItemName;
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| 72 | this.description = ItemDescription;
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| 73 |
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[9096] | 74 | var modelCreators = ApplicationManager.Manager.GetInstances<IGaussianProcessRegressionModelCreator>();
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| 75 | var defaultModelCreator = modelCreators.First(c => c is GaussianProcessRegressionModelCreator);
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[8323] | 76 |
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[9096] | 77 | // GP regression and classification algorithms only differ in the model and solution creators,
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| 78 | // thus we use a common base class and use operator parameters to implement the specific versions.
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| 79 | // Different model creators can be implemented,
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| 80 | // but the solution creator is implemented in a generic fashion already and we don't allow derived solution creators
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| 81 | Parameters.Add(new ConstrainedValueParameter<IGaussianProcessRegressionModelCreator>(ModelCreatorParameterName, "The operator to create the Gaussian process model.",
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| 82 | new ItemSet<IGaussianProcessRegressionModelCreator>(modelCreators), defaultModelCreator));
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| 83 | // this parameter is not intended to be changed,
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| 84 | Parameters.Add(new FixedValueParameter<GaussianProcessRegressionSolutionCreator>(SolutionCreatorParameterName, "The solution creator for the algorithm",
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| 85 | new GaussianProcessRegressionSolutionCreator()));
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| 86 | Parameters[SolutionCreatorParameterName].Hidden = true;
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[8419] | 87 |
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[9096] | 88 | ParameterizedModelCreators();
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[9098] | 89 | ParameterizeSolutionCreator(GaussianProcessSolutionCreatorParameter.Value);
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[9096] | 90 | RegisterEventHandlers();
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| 91 | }
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[8371] | 92 |
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| 93 |
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[9096] | 94 | [StorableHook(HookType.AfterDeserialization)]
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| 95 | private void AfterDeserialization() {
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| 96 | RegisterEventHandlers();
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| 97 | }
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[8371] | 98 |
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[9096] | 99 | public override IDeepCloneable Clone(Cloner cloner) {
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| 100 | return new GaussianProcessRegression(this, cloner);
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| 101 | }
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[8371] | 102 |
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[9096] | 103 | #region events
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| 104 | private void RegisterEventHandlers() {
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[9098] | 105 | GaussianProcessModelCreatorParameter.ValueChanged += ModelCreatorParameter_ValueChanged;
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[9096] | 106 | }
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[8371] | 107 |
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[9096] | 108 | private void ModelCreatorParameter_ValueChanged(object sender, EventArgs e) {
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[9098] | 109 | ParameterizedModelCreator(GaussianProcessModelCreatorParameter.Value);
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[9096] | 110 | }
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| 111 | #endregion
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[8371] | 112 |
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[9096] | 113 | private void ParameterizedModelCreators() {
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[9098] | 114 | foreach (var creator in GaussianProcessModelCreatorParameter.ValidValues) {
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[9096] | 115 | ParameterizedModelCreator(creator);
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| 116 | }
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| 117 | }
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[8371] | 118 |
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[9096] | 119 | private void ParameterizedModelCreator(IGaussianProcessRegressionModelCreator modelCreator) {
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[8371] | 120 | modelCreator.ProblemDataParameter.ActualName = Problem.ProblemDataParameter.Name;
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| 121 | modelCreator.MeanFunctionParameter.ActualName = MeanFunctionParameterName;
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| 122 | modelCreator.CovarianceFunctionParameter.ActualName = CovarianceFunctionParameterName;
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| 123 |
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[9096] | 124 | // parameter names fixed by the algorithm
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| 125 | modelCreator.ModelParameter.ActualName = ModelParameterName;
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| 126 | modelCreator.HyperparameterParameter.ActualName = HyperparameterParameterName;
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| 127 | modelCreator.HyperparameterGradientsParameter.ActualName = HyperparameterGradientsParameterName;
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| 128 | modelCreator.NegativeLogLikelihoodParameter.ActualName = NegativeLogLikelihoodParameterName;
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| 129 | }
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[8371] | 130 |
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[9096] | 131 | private void ParameterizeSolutionCreator(GaussianProcessRegressionSolutionCreator solutionCreator) {
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| 132 | solutionCreator.ModelParameter.ActualName = ModelParameterName;
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[8375] | 133 | solutionCreator.ProblemDataParameter.ActualName = Problem.ProblemDataParameter.Name;
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[8323] | 134 | }
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| 135 | }
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| 136 | }
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