[7849] | 1 | #region License Information
|
---|
| 2 | /* HeuristicLab
|
---|
[12009] | 3 | * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
|
---|
[7849] | 4 | *
|
---|
| 5 | * This file is part of HeuristicLab.
|
---|
| 6 | *
|
---|
| 7 | * HeuristicLab is free software: you can redistribute it and/or modify
|
---|
| 8 | * it under the terms of the GNU General Public License as published by
|
---|
| 9 | * the Free Software Foundation, either version 3 of the License, or
|
---|
| 10 | * (at your option) any later version.
|
---|
| 11 | *
|
---|
| 12 | * HeuristicLab is distributed in the hope that it will be useful,
|
---|
| 13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
|
---|
| 14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
---|
| 15 | * GNU General Public License for more details.
|
---|
| 16 | *
|
---|
| 17 | * You should have received a copy of the GNU General Public License
|
---|
| 18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
|
---|
| 19 | */
|
---|
| 20 | #endregion
|
---|
| 21 |
|
---|
| 22 |
|
---|
| 23 | using System;
|
---|
| 24 | using System.Collections;
|
---|
| 25 | using System.Collections.Generic;
|
---|
[13974] | 26 | using System.Diagnostics.Contracts;
|
---|
[7849] | 27 | using System.Globalization;
|
---|
| 28 | using System.IO;
|
---|
| 29 | using System.Linq;
|
---|
| 30 | using System.Runtime.Serialization;
|
---|
[13974] | 31 | using System.Text;
|
---|
[7849] | 32 |
|
---|
| 33 | namespace HeuristicLab.Problems.Instances.DataAnalysis {
|
---|
[13974] | 34 | public class TableFileParser : Progress<long> { // reports the number of bytes read
|
---|
[8564] | 35 | private const int BUFFER_SIZE = 65536;
|
---|
[9753] | 36 | // char used to symbolize whitespaces (no missing values can be handled with whitespaces)
|
---|
| 37 | private const char WHITESPACECHAR = (char)0;
|
---|
| 38 | private static readonly char[] POSSIBLE_SEPARATORS = new char[] { ',', ';', '\t', WHITESPACECHAR };
|
---|
[7849] | 39 | private Tokenizer tokenizer;
|
---|
[13974] | 40 | private int estimatedNumberOfLines = 200; // initial capacity for columns, will be set automatically when data is read from a file
|
---|
[7849] | 41 |
|
---|
[13974] | 42 |
|
---|
| 43 | private Encoding encoding = Encoding.Default;
|
---|
| 44 |
|
---|
| 45 | public Encoding Encoding {
|
---|
| 46 | get { return encoding; }
|
---|
| 47 | set {
|
---|
| 48 | if (value == null) throw new ArgumentNullException("Encoding");
|
---|
| 49 | encoding = value;
|
---|
| 50 | }
|
---|
| 51 | }
|
---|
| 52 |
|
---|
| 53 |
|
---|
[7849] | 54 | private int rows;
|
---|
| 55 | public int Rows {
|
---|
| 56 | get { return rows; }
|
---|
| 57 | set { rows = value; }
|
---|
| 58 | }
|
---|
| 59 |
|
---|
| 60 | private int columns;
|
---|
| 61 | public int Columns {
|
---|
| 62 | get { return columns; }
|
---|
| 63 | set { columns = value; }
|
---|
| 64 | }
|
---|
| 65 |
|
---|
| 66 | private List<IList> values;
|
---|
| 67 | public List<IList> Values {
|
---|
| 68 | get {
|
---|
| 69 | return values;
|
---|
| 70 | }
|
---|
| 71 | }
|
---|
| 72 |
|
---|
| 73 | private List<string> variableNames;
|
---|
| 74 | public IEnumerable<string> VariableNames {
|
---|
| 75 | get {
|
---|
| 76 | if (variableNames.Count > 0) return variableNames;
|
---|
| 77 | else {
|
---|
| 78 | string[] names = new string[columns];
|
---|
| 79 | for (int i = 0; i < names.Length; i++) {
|
---|
| 80 | names[i] = "X" + i.ToString("000");
|
---|
| 81 | }
|
---|
| 82 | return names;
|
---|
| 83 | }
|
---|
| 84 | }
|
---|
| 85 | }
|
---|
| 86 |
|
---|
| 87 | public TableFileParser() {
|
---|
| 88 | variableNames = new List<string>();
|
---|
| 89 | }
|
---|
| 90 |
|
---|
[9651] | 91 | public bool AreColumnNamesInFirstLine(string fileName) {
|
---|
| 92 | NumberFormatInfo numberFormat;
|
---|
| 93 | DateTimeFormatInfo dateTimeFormatInfo;
|
---|
| 94 | char separator;
|
---|
| 95 | DetermineFileFormat(fileName, out numberFormat, out dateTimeFormatInfo, out separator);
|
---|
| 96 | using (var stream = new FileStream(fileName, FileMode.Open, FileAccess.Read, FileShare.ReadWrite)) {
|
---|
| 97 | return AreColumnNamesInFirstLine(stream, numberFormat, dateTimeFormatInfo, separator);
|
---|
| 98 | }
|
---|
| 99 | }
|
---|
| 100 |
|
---|
| 101 | public bool AreColumnNamesInFirstLine(Stream stream) {
|
---|
| 102 | NumberFormatInfo numberFormat = NumberFormatInfo.InvariantInfo;
|
---|
| 103 | DateTimeFormatInfo dateTimeFormatInfo = DateTimeFormatInfo.InvariantInfo;
|
---|
| 104 | char separator = ',';
|
---|
| 105 | return AreColumnNamesInFirstLine(stream, numberFormat, dateTimeFormatInfo, separator);
|
---|
| 106 | }
|
---|
| 107 |
|
---|
| 108 | public bool AreColumnNamesInFirstLine(string fileName, NumberFormatInfo numberFormat,
|
---|
| 109 | DateTimeFormatInfo dateTimeFormatInfo, char separator) {
|
---|
| 110 | using (var stream = new FileStream(fileName, FileMode.Open, FileAccess.Read, FileShare.ReadWrite)) {
|
---|
| 111 | return AreColumnNamesInFirstLine(stream, numberFormat, dateTimeFormatInfo, separator);
|
---|
| 112 | }
|
---|
| 113 | }
|
---|
| 114 |
|
---|
| 115 | public bool AreColumnNamesInFirstLine(Stream stream, NumberFormatInfo numberFormat,
|
---|
| 116 | DateTimeFormatInfo dateTimeFormatInfo, char separator) {
|
---|
[13974] | 117 | using (StreamReader reader = new StreamReader(stream, Encoding)) {
|
---|
[9651] | 118 | tokenizer = new Tokenizer(reader, numberFormat, dateTimeFormatInfo, separator);
|
---|
[13974] | 119 | return (tokenizer.PeekType() != TokenTypeEnum.Double);
|
---|
[9651] | 120 | }
|
---|
| 121 | }
|
---|
| 122 |
|
---|
[7851] | 123 | /// <summary>
|
---|
| 124 | /// Parses a file and determines the format first
|
---|
| 125 | /// </summary>
|
---|
| 126 | /// <param name="fileName">file which is parsed</param>
|
---|
[9651] | 127 | /// <param name="columnNamesInFirstLine"></param>
|
---|
[13974] | 128 | public void Parse(string fileName, bool columnNamesInFirstLine, int lineLimit = -1) {
|
---|
[7851] | 129 | NumberFormatInfo numberFormat;
|
---|
| 130 | DateTimeFormatInfo dateTimeFormatInfo;
|
---|
| 131 | char separator;
|
---|
[9651] | 132 | DetermineFileFormat(fileName, out numberFormat, out dateTimeFormatInfo, out separator);
|
---|
[13974] | 133 | EstimateNumberOfLines(fileName);
|
---|
| 134 | Parse(new FileStream(fileName, FileMode.Open, FileAccess.Read, FileShare.ReadWrite), numberFormat, dateTimeFormatInfo, separator, columnNamesInFirstLine, lineLimit);
|
---|
[7851] | 135 | }
|
---|
| 136 |
|
---|
| 137 | /// <summary>
|
---|
| 138 | /// Parses a file with the given formats
|
---|
| 139 | /// </summary>
|
---|
| 140 | /// <param name="fileName">file which is parsed</param>
|
---|
| 141 | /// <param name="numberFormat">Format of numbers</param>
|
---|
| 142 | /// <param name="dateTimeFormatInfo">Format of datetime</param>
|
---|
| 143 | /// <param name="separator">defines the separator</param>
|
---|
[9651] | 144 | /// <param name="columnNamesInFirstLine"></param>
|
---|
[13974] | 145 | public void Parse(string fileName, NumberFormatInfo numberFormat, DateTimeFormatInfo dateTimeFormatInfo, char separator, bool columnNamesInFirstLine, int lineLimit = -1) {
|
---|
| 146 | EstimateNumberOfLines(fileName);
|
---|
[9651] | 147 | using (var stream = new FileStream(fileName, FileMode.Open, FileAccess.Read, FileShare.ReadWrite)) {
|
---|
[13974] | 148 | Parse(stream, numberFormat, dateTimeFormatInfo, separator, columnNamesInFirstLine, lineLimit);
|
---|
[9651] | 149 | }
|
---|
[7849] | 150 | }
|
---|
| 151 |
|
---|
[13974] | 152 | // determines the number of newline characters in the first 64KB to guess the number of rows for a file
|
---|
| 153 | private void EstimateNumberOfLines(string fileName) {
|
---|
| 154 | var len = new System.IO.FileInfo(fileName).Length;
|
---|
| 155 | var buf = new char[1024 * 1024];
|
---|
| 156 | using (var reader = new StreamReader(fileName, Encoding)) {
|
---|
| 157 | reader.ReadBlock(buf, 0, buf.Length);
|
---|
| 158 | }
|
---|
| 159 | int numNewLine = 0;
|
---|
| 160 | int charsInCurrentLine = 0, charsInFirstLine = 0; // the first line (names) and the last line (incomplete) are not representative
|
---|
| 161 | foreach (var ch in buf) {
|
---|
| 162 | charsInCurrentLine++;
|
---|
| 163 | if (ch == '\n') {
|
---|
| 164 | if (numNewLine == 0) charsInFirstLine = charsInCurrentLine; // store the number of chars in the first line
|
---|
| 165 | charsInCurrentLine = 0;
|
---|
| 166 | numNewLine++;
|
---|
| 167 | }
|
---|
| 168 | }
|
---|
| 169 | if (numNewLine <= 1) {
|
---|
| 170 | // fail -> keep the default setting
|
---|
| 171 | return;
|
---|
| 172 | } else {
|
---|
| 173 | double charsPerLineFactor = (buf.Length - charsInFirstLine - charsInCurrentLine) / ((double)numNewLine - 1);
|
---|
| 174 | double estimatedLines = len / charsPerLineFactor;
|
---|
| 175 | estimatedNumberOfLines = (int)Math.Round(estimatedLines * 1.1); // pessimistic allocation of 110% to make sure that the list is very likely large enough
|
---|
| 176 | }
|
---|
| 177 | }
|
---|
| 178 |
|
---|
[7851] | 179 | /// <summary>
|
---|
| 180 | /// Takes a Stream and parses it with default format. NumberFormatInfo.InvariantInfo, DateTimeFormatInfo.InvariantInfo and separator = ','
|
---|
| 181 | /// </summary>
|
---|
| 182 | /// <param name="stream">stream which is parsed</param>
|
---|
[9651] | 183 | /// <param name="columnNamesInFirstLine"></param>
|
---|
[13974] | 184 | public void Parse(Stream stream, bool columnNamesInFirstLine, int lineLimit = -1) {
|
---|
[7851] | 185 | NumberFormatInfo numberFormat = NumberFormatInfo.InvariantInfo;
|
---|
| 186 | DateTimeFormatInfo dateTimeFormatInfo = DateTimeFormatInfo.InvariantInfo;
|
---|
| 187 | char separator = ',';
|
---|
[13974] | 188 | Parse(stream, numberFormat, dateTimeFormatInfo, separator, columnNamesInFirstLine, lineLimit);
|
---|
[7851] | 189 | }
|
---|
| 190 |
|
---|
| 191 | /// <summary>
|
---|
| 192 | /// Parses a stream with the given formats.
|
---|
| 193 | /// </summary>
|
---|
| 194 | /// <param name="stream">Stream which is parsed</param>
|
---|
| 195 | /// <param name="numberFormat">Format of numbers</param>
|
---|
| 196 | /// <param name="dateTimeFormatInfo">Format of datetime</param>
|
---|
| 197 | /// <param name="separator">defines the separator</param>
|
---|
[9651] | 198 | /// <param name="columnNamesInFirstLine"></param>
|
---|
[13974] | 199 | public void Parse(Stream stream, NumberFormatInfo numberFormat, DateTimeFormatInfo dateTimeFormatInfo, char separator, bool columnNamesInFirstLine, int lineLimit = -1) {
|
---|
| 200 | using (StreamReader reader = new StreamReader(stream, Encoding)) {
|
---|
[7849] | 201 | tokenizer = new Tokenizer(reader, numberFormat, dateTimeFormatInfo, separator);
|
---|
[13974] | 202 | values = new List<IList>();
|
---|
| 203 | if (lineLimit > 0) estimatedNumberOfLines = lineLimit;
|
---|
[7849] | 204 |
|
---|
[13974] | 205 | if (columnNamesInFirstLine) {
|
---|
| 206 | ParseVariableNames();
|
---|
| 207 | if (!tokenizer.HasNext())
|
---|
| 208 | Error(
|
---|
| 209 | "Couldn't parse data values. Probably because of incorrect number format (the parser expects english number format with a '.' as decimal separator).",
|
---|
| 210 | "", tokenizer.CurrentLineNumber);
|
---|
| 211 | }
|
---|
[7849] | 212 |
|
---|
[13974] | 213 |
|
---|
| 214 | // read values... start in first row
|
---|
| 215 | int nLinesParsed = 0;
|
---|
| 216 | int colIdx = 0;
|
---|
| 217 | int numValuesInFirstRow = columnNamesInFirstLine ? variableNames.Count : -1; // number of variables or inizialize based on first row of values (-1)
|
---|
| 218 | while (tokenizer.HasNext() && (lineLimit < 0 || nLinesParsed < lineLimit)) {
|
---|
| 219 | if (tokenizer.PeekType() == TokenTypeEnum.NewLine) {
|
---|
| 220 | tokenizer.Skip();
|
---|
| 221 |
|
---|
| 222 | // all rows have to have the same number of values
|
---|
| 223 | // the first row defines how many samples are needed
|
---|
| 224 | if (numValuesInFirstRow < 0) numValuesInFirstRow = values.Count; // set to number of colums in the first row
|
---|
| 225 | else if (colIdx > 0 && numValuesInFirstRow != colIdx) { // read at least one value in the row (support for skipping empty lines)
|
---|
| 226 | Error("The first row of the dataset has " + numValuesInFirstRow + " columns." + Environment.NewLine +
|
---|
| 227 | "Line " + tokenizer.CurrentLineNumber + " has " + colIdx + " columns.", "",
|
---|
| 228 | tokenizer.CurrentLineNumber);
|
---|
| 229 | }
|
---|
| 230 | OnReport(tokenizer.BytesRead);
|
---|
| 231 |
|
---|
| 232 | nLinesParsed++;
|
---|
| 233 | colIdx = 0;
|
---|
| 234 | } else {
|
---|
| 235 | // read one value
|
---|
| 236 | TokenTypeEnum type; string strVal; double dblVal; DateTime dateTimeVal;
|
---|
| 237 | tokenizer.Next(out type, out strVal, out dblVal, out dateTimeVal);
|
---|
| 238 |
|
---|
| 239 | // initialize columns on the first row (fixing data types as presented in the first row...)
|
---|
| 240 | if (nLinesParsed == 0) {
|
---|
| 241 | values.Add(CreateList(type, estimatedNumberOfLines));
|
---|
| 242 | } else if (colIdx == values.Count) {
|
---|
| 243 | Error("The first row of the dataset has " + numValuesInFirstRow + " columns." + Environment.NewLine +
|
---|
| 244 | "Line " + tokenizer.CurrentLineNumber + " has more columns.", "",
|
---|
| 245 | tokenizer.CurrentLineNumber);
|
---|
| 246 | }
|
---|
| 247 | if (!IsColumnTypeCompatible(values[colIdx], type)) {
|
---|
| 248 | values[colIdx] = ConvertToStringColumn(values[colIdx]);
|
---|
| 249 | }
|
---|
| 250 | // add the value to the column
|
---|
| 251 | AddValue(type, values[colIdx++], strVal, dblVal, dateTimeVal);
|
---|
| 252 | }
|
---|
[7849] | 253 | }
|
---|
| 254 |
|
---|
[13974] | 255 | if (!values.Any() || values.First().Count == 0)
|
---|
| 256 | Error("Couldn't parse data values. Probably because of incorrect number format " +
|
---|
| 257 | "(the parser expects english number format with a '.' as decimal separator).", "", tokenizer.CurrentLineNumber);
|
---|
[7849] | 258 | }
|
---|
| 259 |
|
---|
[13974] | 260 | this.rows = values.First().Count;
|
---|
| 261 | this.columns = values.Count;
|
---|
[7849] | 262 |
|
---|
[13974] | 263 | // after everything has been parsed make sure the lists are as compact as possible
|
---|
| 264 | foreach (var l in values) {
|
---|
| 265 | var dblList = l as List<double>;
|
---|
| 266 | var byteList = l as List<byte>;
|
---|
| 267 | var dateList = l as List<DateTime>;
|
---|
| 268 | var stringList = l as List<string>;
|
---|
| 269 | var objList = l as List<object>;
|
---|
| 270 | if (dblList != null) dblList.TrimExcess();
|
---|
| 271 | if (byteList != null) byteList.TrimExcess();
|
---|
| 272 | if (dateList != null) dateList.TrimExcess();
|
---|
| 273 | if (stringList != null) stringList.TrimExcess();
|
---|
| 274 | if (objList != null) objList.TrimExcess();
|
---|
| 275 | }
|
---|
[7849] | 276 |
|
---|
[13974] | 277 | // for large files we created a lot of memory pressure, cannot hurt to run GC.Collect here (TableFileParser is called seldomly on user interaction)
|
---|
| 278 | GC.Collect(2, GCCollectionMode.Forced);
|
---|
| 279 | }
|
---|
| 280 |
|
---|
| 281 | #region type-dependent dispatch
|
---|
| 282 | private bool IsColumnTypeCompatible(IList list, TokenTypeEnum tokenType) {
|
---|
| 283 | return (list is List<string>) || // all tokens can be added to a string list
|
---|
| 284 | (tokenType == TokenTypeEnum.Missing) || // empty entries are allowed in all columns
|
---|
| 285 | (tokenType == TokenTypeEnum.Double && list is List<double>) ||
|
---|
| 286 | (tokenType == TokenTypeEnum.DateTime && list is List<DateTime>);
|
---|
| 287 | }
|
---|
| 288 |
|
---|
| 289 | // all columns are converted to string columns when we find an non-empty value that has incorrect type
|
---|
| 290 | private IList ConvertToStringColumn(IList list) {
|
---|
| 291 | var dblL = list as List<double>;
|
---|
| 292 | if (dblL != null) {
|
---|
| 293 | var l = new List<string>(dblL.Capacity);
|
---|
| 294 | l.AddRange(dblL.Select(dbl => dbl.ToString()));
|
---|
| 295 | return l;
|
---|
[7849] | 296 | }
|
---|
[13974] | 297 |
|
---|
| 298 | var dtL = list as List<DateTime>;
|
---|
| 299 | if (dtL != null) {
|
---|
| 300 | var l = new List<string>(dtL.Capacity);
|
---|
| 301 | l.AddRange(dtL.Select(dbl => dbl.ToString()));
|
---|
| 302 | return l;
|
---|
| 303 | }
|
---|
| 304 |
|
---|
| 305 | if (list is List<string>) return list;
|
---|
| 306 |
|
---|
| 307 | throw new InvalidProgramException(string.Format("Cannot convert column of type {0} to string column", list.GetType()));
|
---|
[7849] | 308 | }
|
---|
| 309 |
|
---|
[13974] | 310 | private void AddValue(TokenTypeEnum type, IList list, string strVal, double dblVal, DateTime dateTimeVal) {
|
---|
| 311 | var dblList = list as List<double>;
|
---|
| 312 | if (dblList != null) {
|
---|
| 313 | AddValue(type, dblList, dblVal);
|
---|
| 314 | return;
|
---|
| 315 | }
|
---|
| 316 |
|
---|
| 317 | var strList = list as List<string>;
|
---|
| 318 | if (strList != null) {
|
---|
| 319 | AddValue(type, strList, strVal);
|
---|
| 320 | return;
|
---|
| 321 | }
|
---|
| 322 | var dtList = list as List<DateTime>;
|
---|
| 323 | if (dtList != null) {
|
---|
| 324 | AddValue(type, dtList, dateTimeVal);
|
---|
| 325 | return;
|
---|
| 326 | }
|
---|
| 327 |
|
---|
| 328 | list.Add(strVal); // assumes List<object>
|
---|
| 329 | }
|
---|
| 330 |
|
---|
| 331 | private void AddValue(TokenTypeEnum type, List<double> list, double dblVal) {
|
---|
| 332 | Contract.Assert(type == TokenTypeEnum.Missing || type == TokenTypeEnum.Double);
|
---|
| 333 | list.Add(type == TokenTypeEnum.Missing ? double.NaN : dblVal);
|
---|
| 334 | }
|
---|
| 335 |
|
---|
| 336 | private void AddValue(TokenTypeEnum type, List<string> list, string strVal) {
|
---|
| 337 | // assumes that strVal is always set to the original token read from the input file
|
---|
| 338 | list.Add(type == TokenTypeEnum.Missing ? string.Empty : strVal);
|
---|
| 339 | }
|
---|
| 340 |
|
---|
| 341 | private void AddValue(TokenTypeEnum type, List<DateTime> list, DateTime dtVal) {
|
---|
| 342 | Contract.Assert(type == TokenTypeEnum.Missing || type == TokenTypeEnum.DateTime);
|
---|
| 343 | list.Add(type == TokenTypeEnum.Missing ? DateTime.MinValue : dtVal);
|
---|
| 344 | }
|
---|
| 345 |
|
---|
| 346 | private IList CreateList(TokenTypeEnum type, int estimatedNumberOfLines) {
|
---|
| 347 | switch (type) {
|
---|
| 348 | case TokenTypeEnum.String:
|
---|
| 349 | return new List<string>(estimatedNumberOfLines);
|
---|
| 350 | case TokenTypeEnum.Double:
|
---|
| 351 | case TokenTypeEnum.Missing: // assume double columns
|
---|
| 352 | return new List<double>(estimatedNumberOfLines);
|
---|
| 353 | case TokenTypeEnum.DateTime:
|
---|
| 354 | return new List<DateTime>(estimatedNumberOfLines);
|
---|
| 355 | default:
|
---|
| 356 | throw new InvalidOperationException();
|
---|
| 357 | }
|
---|
| 358 | }
|
---|
| 359 | #endregion
|
---|
| 360 |
|
---|
[7849] | 361 | public static void DetermineFileFormat(string path, out NumberFormatInfo numberFormat, out DateTimeFormatInfo dateTimeFormatInfo, out char separator) {
|
---|
[8885] | 362 | DetermineFileFormat(new FileStream(path, FileMode.Open, FileAccess.Read, FileShare.ReadWrite), out numberFormat, out dateTimeFormatInfo, out separator);
|
---|
[7849] | 363 | }
|
---|
| 364 |
|
---|
| 365 | public static void DetermineFileFormat(Stream stream, out NumberFormatInfo numberFormat, out DateTimeFormatInfo dateTimeFormatInfo, out char separator) {
|
---|
| 366 | using (StreamReader reader = new StreamReader(stream)) {
|
---|
| 367 | // skip first line
|
---|
| 368 | reader.ReadLine();
|
---|
| 369 | // read a block
|
---|
| 370 | char[] buffer = new char[BUFFER_SIZE];
|
---|
| 371 | int charsRead = reader.ReadBlock(buffer, 0, BUFFER_SIZE);
|
---|
| 372 | // count frequency of special characters
|
---|
| 373 | Dictionary<char, int> charCounts = buffer.Take(charsRead)
|
---|
| 374 | .GroupBy(c => c)
|
---|
| 375 | .ToDictionary(g => g.Key, g => g.Count());
|
---|
| 376 |
|
---|
| 377 | // depending on the characters occuring in the block
|
---|
| 378 | // we distinghish a number of different cases based on the the following rules:
|
---|
| 379 | // many points => it must be English number format, the other frequently occuring char is the separator
|
---|
| 380 | // no points but many commas => this is the problematic case. Either German format (real numbers) or English format (only integer numbers) with ',' as separator
|
---|
| 381 | // => check the line in more detail:
|
---|
| 382 | // English: 0, 0, 0, 0
|
---|
| 383 | // German: 0,0 0,0 0,0 ...
|
---|
| 384 | // => if commas are followed by space => English format
|
---|
| 385 | // no points no commas => English format (only integer numbers) use the other frequently occuring char as separator
|
---|
| 386 | // in all cases only treat ' ' as separator if no other separator is possible (spaces can also occur additionally to separators)
|
---|
| 387 | if (OccurrencesOf(charCounts, '.') > 10) {
|
---|
| 388 | numberFormat = NumberFormatInfo.InvariantInfo;
|
---|
| 389 | dateTimeFormatInfo = DateTimeFormatInfo.InvariantInfo;
|
---|
| 390 | separator = POSSIBLE_SEPARATORS
|
---|
| 391 | .Where(c => OccurrencesOf(charCounts, c) > 10)
|
---|
| 392 | .OrderBy(c => -OccurrencesOf(charCounts, c))
|
---|
| 393 | .DefaultIfEmpty(' ')
|
---|
| 394 | .First();
|
---|
| 395 | } else if (OccurrencesOf(charCounts, ',') > 10) {
|
---|
| 396 | // no points and many commas
|
---|
| 397 | // count the number of tokens (chains of only digits and commas) that contain multiple comma characters
|
---|
| 398 | int tokensWithMultipleCommas = 0;
|
---|
| 399 | for (int i = 0; i < charsRead; i++) {
|
---|
| 400 | int nCommas = 0;
|
---|
| 401 | while (i < charsRead && (buffer[i] == ',' || Char.IsDigit(buffer[i]))) {
|
---|
| 402 | if (buffer[i] == ',') nCommas++;
|
---|
| 403 | i++;
|
---|
| 404 | }
|
---|
| 405 | if (nCommas > 2) tokensWithMultipleCommas++;
|
---|
| 406 | }
|
---|
| 407 | if (tokensWithMultipleCommas > 1) {
|
---|
| 408 | // English format (only integer values) with ',' as separator
|
---|
| 409 | numberFormat = NumberFormatInfo.InvariantInfo;
|
---|
| 410 | dateTimeFormatInfo = DateTimeFormatInfo.InvariantInfo;
|
---|
| 411 | separator = ',';
|
---|
| 412 | } else {
|
---|
[13974] | 413 | char[] disallowedSeparators = new char[] { ',' }; // n. def. contains a space so ' ' should be disallowed to, however existing unit tests would fail
|
---|
[7849] | 414 | // German format (real values)
|
---|
| 415 | numberFormat = NumberFormatInfo.GetInstance(new CultureInfo("de-DE"));
|
---|
| 416 | dateTimeFormatInfo = DateTimeFormatInfo.GetInstance(new CultureInfo("de-DE"));
|
---|
| 417 | separator = POSSIBLE_SEPARATORS
|
---|
| 418 | .Except(disallowedSeparators)
|
---|
| 419 | .Where(c => OccurrencesOf(charCounts, c) > 10)
|
---|
| 420 | .OrderBy(c => -OccurrencesOf(charCounts, c))
|
---|
| 421 | .DefaultIfEmpty(' ')
|
---|
| 422 | .First();
|
---|
| 423 | }
|
---|
| 424 | } else {
|
---|
| 425 | // no points and no commas => English format
|
---|
| 426 | numberFormat = NumberFormatInfo.InvariantInfo;
|
---|
| 427 | dateTimeFormatInfo = DateTimeFormatInfo.InvariantInfo;
|
---|
| 428 | separator = POSSIBLE_SEPARATORS
|
---|
| 429 | .Where(c => OccurrencesOf(charCounts, c) > 10)
|
---|
| 430 | .OrderBy(c => -OccurrencesOf(charCounts, c))
|
---|
| 431 | .DefaultIfEmpty(' ')
|
---|
| 432 | .First();
|
---|
| 433 | }
|
---|
| 434 | }
|
---|
| 435 | }
|
---|
| 436 |
|
---|
| 437 | private static int OccurrencesOf(Dictionary<char, int> charCounts, char c) {
|
---|
| 438 | return charCounts.ContainsKey(c) ? charCounts[c] : 0;
|
---|
| 439 | }
|
---|
| 440 |
|
---|
| 441 | #region tokenizer
|
---|
[13974] | 442 | // the tokenizer reads full lines and returns separated tokens in the line as well as a terminating end-of-line character
|
---|
[7849] | 443 | internal enum TokenTypeEnum {
|
---|
[13974] | 444 | NewLine, String, Double, DateTime, Missing
|
---|
[7849] | 445 | }
|
---|
| 446 |
|
---|
| 447 | internal class Tokenizer {
|
---|
| 448 | private StreamReader reader;
|
---|
[13974] | 449 | // we assume that a buffer of 1024 tokens for a line is sufficient most of the time (the buffer is increased below if necessary)
|
---|
| 450 | private TokenTypeEnum[] tokenTypes = new TokenTypeEnum[1024];
|
---|
| 451 | private string[] stringVals = new string[1024];
|
---|
| 452 | private double[] doubleVals = new double[1024];
|
---|
| 453 | private DateTime[] dateTimeVals = new DateTime[1024];
|
---|
| 454 | private int tokenPos;
|
---|
| 455 | private int numTokens;
|
---|
[7849] | 456 | private NumberFormatInfo numberFormatInfo;
|
---|
| 457 | private DateTimeFormatInfo dateTimeFormatInfo;
|
---|
| 458 | private char separator;
|
---|
| 459 |
|
---|
[13974] | 460 | // arrays for string.Split()
|
---|
| 461 | private readonly char[] whiteSpaceSeparators = new char[0]; // string split uses separators as default
|
---|
| 462 | private readonly char[] separators;
|
---|
| 463 |
|
---|
[7849] | 464 | private int currentLineNumber = 0;
|
---|
| 465 | public int CurrentLineNumber {
|
---|
| 466 | get { return currentLineNumber; }
|
---|
| 467 | private set { currentLineNumber = value; }
|
---|
| 468 | }
|
---|
| 469 | private string currentLine;
|
---|
| 470 | public string CurrentLine {
|
---|
| 471 | get { return currentLine; }
|
---|
| 472 | private set { currentLine = value; }
|
---|
| 473 | }
|
---|
[13974] | 474 | public long BytesRead {
|
---|
| 475 | get;
|
---|
| 476 | private set;
|
---|
[7849] | 477 | }
|
---|
| 478 |
|
---|
| 479 | public Tokenizer(StreamReader reader, NumberFormatInfo numberFormatInfo, DateTimeFormatInfo dateTimeFormatInfo, char separator) {
|
---|
| 480 | this.reader = reader;
|
---|
| 481 | this.numberFormatInfo = numberFormatInfo;
|
---|
| 482 | this.dateTimeFormatInfo = dateTimeFormatInfo;
|
---|
| 483 | this.separator = separator;
|
---|
[13974] | 484 | this.separators = new char[] { separator };
|
---|
[7849] | 485 | ReadNextTokens();
|
---|
| 486 | }
|
---|
| 487 |
|
---|
[13974] | 488 | public bool HasNext() {
|
---|
| 489 | return numTokens > tokenPos || !reader.EndOfStream;
|
---|
[7849] | 490 | }
|
---|
| 491 |
|
---|
[13974] | 492 | public TokenTypeEnum PeekType() {
|
---|
| 493 | return tokenTypes[tokenPos];
|
---|
[7849] | 494 | }
|
---|
| 495 |
|
---|
[13974] | 496 | public void Skip() {
|
---|
| 497 | // simply skips one token without returning the result values
|
---|
| 498 | tokenPos++;
|
---|
| 499 | if (numTokens == tokenPos) {
|
---|
| 500 | ReadNextTokens();
|
---|
[7849] | 501 | }
|
---|
| 502 | }
|
---|
| 503 |
|
---|
[13974] | 504 | public void Next(out TokenTypeEnum type, out string strVal, out double dblVal, out DateTime dateTimeVal) {
|
---|
| 505 | type = tokenTypes[tokenPos];
|
---|
| 506 | strVal = stringVals[tokenPos];
|
---|
| 507 | dblVal = doubleVals[tokenPos];
|
---|
| 508 | dateTimeVal = dateTimeVals[tokenPos];
|
---|
| 509 | Skip();
|
---|
[7849] | 510 | }
|
---|
| 511 |
|
---|
[13974] | 512 | private void ReadNextTokens() {
|
---|
| 513 | if (!reader.EndOfStream) {
|
---|
| 514 | CurrentLine = reader.ReadLine();
|
---|
| 515 | CurrentLineNumber++;
|
---|
| 516 | if (reader.BaseStream.CanSeek) {
|
---|
| 517 | BytesRead = reader.BaseStream.Position;
|
---|
| 518 | } else {
|
---|
| 519 | BytesRead += CurrentLine.Length + 2; // guess
|
---|
| 520 | }
|
---|
| 521 | int i = 0;
|
---|
| 522 | if (!string.IsNullOrWhiteSpace(CurrentLine)) {
|
---|
| 523 | foreach (var tok in Split(CurrentLine)) {
|
---|
| 524 | TokenTypeEnum type;
|
---|
| 525 | double doubleVal;
|
---|
| 526 | DateTime dateTimeValue;
|
---|
| 527 | type = TokenTypeEnum.String; // default
|
---|
| 528 | stringVals[i] = tok.Trim();
|
---|
| 529 | if (double.TryParse(tok, NumberStyles.Float, numberFormatInfo, out doubleVal)) {
|
---|
| 530 | type = TokenTypeEnum.Double;
|
---|
| 531 | doubleVals[i] = doubleVal;
|
---|
| 532 | } else if (DateTime.TryParse(tok, dateTimeFormatInfo, DateTimeStyles.None, out dateTimeValue)) {
|
---|
| 533 | type = TokenTypeEnum.DateTime;
|
---|
| 534 | dateTimeVals[i] = dateTimeValue;
|
---|
| 535 | } else if (string.IsNullOrWhiteSpace(tok)) {
|
---|
| 536 | type = TokenTypeEnum.Missing;
|
---|
| 537 | }
|
---|
[7849] | 538 |
|
---|
[13974] | 539 | // couldn't parse the token as an int or float number or datetime value so return a string token
|
---|
[7849] | 540 |
|
---|
[13974] | 541 | tokenTypes[i] = type;
|
---|
| 542 | i++;
|
---|
[7849] | 543 |
|
---|
[13974] | 544 | if (i >= tokenTypes.Length) {
|
---|
| 545 | // increase buffer size if necessary
|
---|
| 546 | IncreaseCapacity(ref tokenTypes);
|
---|
| 547 | IncreaseCapacity(ref doubleVals);
|
---|
| 548 | IncreaseCapacity(ref stringVals);
|
---|
| 549 | IncreaseCapacity(ref dateTimeVals);
|
---|
| 550 | }
|
---|
| 551 | }
|
---|
[7849] | 552 | }
|
---|
[13974] | 553 | tokenTypes[i] = TokenTypeEnum.NewLine;
|
---|
| 554 | numTokens = i + 1;
|
---|
| 555 | tokenPos = 0;
|
---|
[7849] | 556 | }
|
---|
| 557 | }
|
---|
| 558 |
|
---|
[13974] | 559 | private IEnumerable<string> Split(string line) {
|
---|
| 560 | return separator == WHITESPACECHAR ?
|
---|
| 561 | line.Split(whiteSpaceSeparators, StringSplitOptions.RemoveEmptyEntries) :
|
---|
| 562 | line.Split(separators);
|
---|
[7849] | 563 | }
|
---|
[13974] | 564 |
|
---|
| 565 | private static void IncreaseCapacity<T>(ref T[] arr) {
|
---|
| 566 | int n = (int)Math.Floor(arr.Length * 1.7); // guess
|
---|
| 567 | T[] arr2 = new T[n];
|
---|
| 568 | Array.Copy(arr, arr2, arr.Length);
|
---|
| 569 | arr = arr2;
|
---|
| 570 | }
|
---|
[7849] | 571 | }
|
---|
[13974] | 572 | #endregion
|
---|
[7849] | 573 |
|
---|
[13974] | 574 | #region parsing
|
---|
| 575 |
|
---|
[7849] | 576 | private void ParseVariableNames() {
|
---|
| 577 | // the first line must contain variable names
|
---|
[13974] | 578 | List<string> varNames = new List<string>();
|
---|
| 579 |
|
---|
| 580 | TokenTypeEnum type;
|
---|
| 581 | string strVal;
|
---|
| 582 | double dblVal;
|
---|
| 583 | DateTime dateTimeVal;
|
---|
| 584 |
|
---|
| 585 | tokenizer.Next(out type, out strVal, out dblVal, out dateTimeVal);
|
---|
| 586 |
|
---|
| 587 | // the first token must be a variable name
|
---|
| 588 | if (type != TokenTypeEnum.String)
|
---|
| 589 | throw new ArgumentException("Error: Expected " + TokenTypeEnum.String + " got " + type);
|
---|
| 590 | varNames.Add(strVal);
|
---|
| 591 |
|
---|
| 592 | while (tokenizer.HasNext() && tokenizer.PeekType() != TokenTypeEnum.NewLine) {
|
---|
| 593 | tokenizer.Next(out type, out strVal, out dblVal, out dateTimeVal);
|
---|
| 594 | varNames.Add(strVal);
|
---|
[7849] | 595 | }
|
---|
[13974] | 596 | ExpectType(TokenTypeEnum.NewLine);
|
---|
| 597 |
|
---|
| 598 | variableNames = varNames;
|
---|
[7849] | 599 | }
|
---|
| 600 |
|
---|
[13974] | 601 | private void ExpectType(TokenTypeEnum expectedToken) {
|
---|
| 602 | if (tokenizer.PeekType() != expectedToken)
|
---|
| 603 | throw new ArgumentException("Error: Expected " + expectedToken + " got " + tokenizer.PeekType());
|
---|
| 604 | tokenizer.Skip();
|
---|
[7849] | 605 | }
|
---|
| 606 |
|
---|
| 607 | private void Error(string message, string token, int lineNumber) {
|
---|
| 608 | throw new DataFormatException("Error while parsing.\n" + message, token, lineNumber);
|
---|
| 609 | }
|
---|
| 610 | #endregion
|
---|
| 611 |
|
---|
| 612 | [Serializable]
|
---|
[9449] | 613 | public class DataFormatException : Exception {
|
---|
[7849] | 614 | private int line;
|
---|
| 615 | public int Line {
|
---|
| 616 | get { return line; }
|
---|
| 617 | }
|
---|
| 618 | private string token;
|
---|
| 619 | public string Token {
|
---|
| 620 | get { return token; }
|
---|
| 621 | }
|
---|
| 622 | public DataFormatException(string message, string token, int line)
|
---|
| 623 | : base(message + "\nToken: " + token + " (line: " + line + ")") {
|
---|
| 624 | this.token = token;
|
---|
| 625 | this.line = line;
|
---|
| 626 | }
|
---|
| 627 |
|
---|
| 628 | public DataFormatException(SerializationInfo info, StreamingContext context) : base(info, context) { }
|
---|
| 629 | }
|
---|
| 630 | }
|
---|
| 631 | }
|
---|