[11884] | 1 | #region License Information
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| 2 | /* HeuristicLab
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| 3 | * Copyright (C) 2002-2014 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
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| 4 | *
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| 5 | * This file is part of HeuristicLab.
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| 6 | *
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| 7 | * HeuristicLab is free software: you can redistribute it and/or modify
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| 8 | * it under the terms of the GNU General Public License as published by
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| 9 | * the Free Software Foundation, either version 3 of the License, or
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| 10 | * (at your option) any later version.
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| 11 | *
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| 12 | * HeuristicLab is distributed in the hope that it will be useful,
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| 13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 15 | * GNU General Public License for more details.
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| 16 | *
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| 17 | * You should have received a copy of the GNU General Public License
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| 18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
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| 19 | */
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| 20 | #endregion
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| 21 |
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| 22 | using System;
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| 23 | using System.Linq;
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| 24 | using HeuristicLab.Analysis;
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| 25 | using HeuristicLab.Common;
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| 26 | using HeuristicLab.Core;
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| 27 | using HeuristicLab.Data;
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| 28 | using HeuristicLab.Encodings.PermutationEncoding;
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| 29 | using HeuristicLab.Operators;
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| 30 | using HeuristicLab.Optimization;
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| 31 | using HeuristicLab.Optimization.Operators;
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| 32 | using HeuristicLab.Parameters;
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| 33 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
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| 34 | using HeuristicLab.PluginInfrastructure;
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| 35 |
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| 36 | namespace HeuristicLab.Algorithms.VOffspringSelectionGeneticAlgorithm {
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| 37 | [Item("UnwantedMutationsComparator", "Compares the similarity against that of its parents (assumes the parents are subscopes to the child scope). This operator works with any number of subscopes > 0.")]
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| 38 | [StorableClass]
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| 39 | public class UnwantedMutationsComparator : SingleSuccessorOperator, ISubScopesQualityComparatorOperator, ISimilarityBasedOperator {
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| 40 | [Storable]
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| 41 | public ISolutionSimilarityCalculator SimilarityCalculator { get; set; }
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| 42 | public IValueLookupParameter<BoolValue> MaximizationParameter {
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| 43 | get { return (IValueLookupParameter<BoolValue>)Parameters["Maximization"]; }
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| 44 | }
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| 45 | public ILookupParameter<DoubleValue> LeftSideParameter {
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| 46 | get { return (ILookupParameter<DoubleValue>)Parameters["LeftSide"]; }
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| 47 | }
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| 48 | public ILookupParameter<ItemArray<DoubleValue>> RightSideParameter {
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| 49 | get { return (ILookupParameter<ItemArray<DoubleValue>>)Parameters["RightSide"]; }
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| 50 | }
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| 51 | public ILookupParameter<BoolValue> ResultParameter {
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| 52 | get { return (ILookupParameter<BoolValue>)Parameters["Result"]; }
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| 53 | }
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| 54 | public ValueLookupParameter<DoubleValue> ComparisonFactorParameter {
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| 55 | get { return (ValueLookupParameter<DoubleValue>)Parameters["ComparisonFactor"]; }
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| 56 | }
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| 57 | public ValueLookupParameter<DoubleValue> DiversityComparisonFactorParameter {
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| 58 | get { return (ValueLookupParameter<DoubleValue>)Parameters["DiversityComparisonFactor"]; }
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| 59 | }
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| 60 | private ValueLookupParameter<DoubleValue> ComparisonFactorLowerBoundParameter {
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| 61 | get { return (ValueLookupParameter<DoubleValue>)Parameters["DiversityComparisonFactorLowerBound"]; }
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| 62 | }
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| 63 | private ValueLookupParameter<DoubleValue> ComparisonFactorUpperBoundParameter {
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| 64 | get { return (ValueLookupParameter<DoubleValue>)Parameters["DiversityComparisonFactorUpperBound"]; }
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| 65 | }
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| 66 | public IConstrainedValueParameter<IDiscreteDoubleValueModifier> ComparisonFactorModifierParameter {
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| 67 | get { return (IConstrainedValueParameter<IDiscreteDoubleValueModifier>)Parameters["ComparisonFactorModifier"]; }
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| 68 | }
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| 69 | public ValueLookupParameter<ResultCollection> ResultsParameter {
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| 70 | get { return (ValueLookupParameter<ResultCollection>)Parameters["Results"]; }
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| 71 | }
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| 72 | public ILookupParameter<IntValue> GenerationsParameter {
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| 73 | get { return (LookupParameter<IntValue>)Parameters["Generations"]; }
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| 74 | }
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| 75 | public ValueParameter<BoolValue> EnableDivCriteriaParameter {
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| 76 | get { return (ValueParameter<BoolValue>)Parameters["EnableDivCriteria"]; }
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| 77 | }
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| 78 | public ValueParameter<BoolValue> EnableQualityCriteriaParameter {
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| 79 | get { return (ValueParameter<BoolValue>)Parameters["EnableQualityCriteria"]; }
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| 80 | }
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| 81 |
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| 82 | private const string spDetailsParameterName = "SPDetails";
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| 83 | private const string divDataRowName = "DiversitySuccessCount";
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| 84 | private const string qualityDataRowName = "QualitySuccessCount";
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| 85 | private const string divFailDataRowName = "DiversityFailCount";
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| 86 | private const string qualityFailDataRowName = "QualityFailCount";
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| 87 | private const string overallCountDataRowName = "OverallCount";
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| 88 | private const string successCountDataRowName = "SuccessCount";
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| 89 | private const string unwantedMutationsDataRowName = "UnwantedMutations";
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| 90 |
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| 91 | [Storable]
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| 92 | private int currentGeneration;
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| 93 | [Storable]
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| 94 | private int divCount;
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| 95 | [Storable]
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| 96 | private int qualityCount;
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| 97 | [Storable]
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| 98 | private int badQualityCount;
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| 99 | [Storable]
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| 100 | private int badDivCount;
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| 101 | [Storable]
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| 102 | private int overallCount;
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| 103 | [Storable]
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| 104 | private int successCount;
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| 105 | [Storable]
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| 106 | private double umRatio;
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| 107 |
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| 108 | [StorableConstructor]
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| 109 | protected UnwantedMutationsComparator(bool deserializing) : base(deserializing) { }
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| 110 | protected UnwantedMutationsComparator(UnwantedMutationsComparator original, Cloner cloner)
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| 111 | : base(original, cloner) {
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| 112 | SimilarityCalculator = cloner.Clone(original.SimilarityCalculator);
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| 113 | currentGeneration = original.currentGeneration;
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| 114 | divCount = original.divCount;
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| 115 | qualityCount = original.qualityCount;
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| 116 | overallCount = original.overallCount;
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| 117 | successCount = original.successCount;
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| 118 | badDivCount = original.badDivCount;
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| 119 | badQualityCount = original.badQualityCount;
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| 120 | umRatio = original.umRatio;
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| 121 | }
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| 122 | public UnwantedMutationsComparator()
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| 123 | : base() {
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| 124 | Parameters.Add(new ValueLookupParameter<BoolValue>("Maximization", "True if the problem is a maximization problem, false otherwise"));
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| 125 | Parameters.Add(new LookupParameter<DoubleValue>("LeftSide", "The quality of the child."));
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| 126 | Parameters.Add(new ScopeTreeLookupParameter<DoubleValue>("RightSide", "The qualities of the parents."));
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| 127 | Parameters.Add(new LookupParameter<BoolValue>("Result", "The result of the comparison: True means Quality is better, False means it is worse than parents."));
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| 128 | Parameters.Add(new ValueLookupParameter<DoubleValue>("ComparisonFactor", "Determines if the quality should be compared to the better parent (1.0), to the worse (0.0) or to any linearly interpolated value between them."));
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| 129 | Parameters.Add(new ValueLookupParameter<DoubleValue>("DiversityComparisonFactor", "Determines if the quality should be compared to the better parent (1.0), to the worse (0.0) or to any linearly interpolated value between them.", new DoubleValue(0.0)));
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| 130 | Parameters.Add(new ValueLookupParameter<DoubleValue>("DiversityComparisonFactorLowerBound", "The lower bound of the comparison factor (start).", new DoubleValue(0.7)));
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| 131 | Parameters.Add(new ValueLookupParameter<DoubleValue>("DiversityComparisonFactorUpperBound", "The upper bound of the comparison factor (end).", new DoubleValue(1.0)));
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| 132 | Parameters.Add(new OptionalConstrainedValueParameter<IDiscreteDoubleValueModifier>("ComparisonFactorModifier", "The operator used to modify the comparison factor.", new ItemSet<IDiscreteDoubleValueModifier>(new IDiscreteDoubleValueModifier[] { new LinearDiscreteDoubleValueModifier() }), new LinearDiscreteDoubleValueModifier()));
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| 133 | Parameters.Add(new ValueLookupParameter<ResultCollection>("Results", "The result collection where the population diversity analysis results should be stored."));
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| 134 | Parameters.Add(new LookupParameter<IntValue>("Generations", "The current number of generations."));
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| 135 | Parameters.Add(new ValueParameter<BoolValue>("EnableDivCriteria", "Use diversity as additional offspring selection criteria.", new BoolValue(true)));
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| 136 | Parameters.Add(new ValueParameter<BoolValue>("EnableQualityCriteria", "Use quality as additional offspring selection criteria.", new BoolValue(false)));
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| 137 |
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| 138 | foreach (IDiscreteDoubleValueModifier modifier in ApplicationManager.Manager.GetInstances<IDiscreteDoubleValueModifier>().OrderBy(x => x.Name))
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| 139 | ComparisonFactorModifierParameter.ValidValues.Add(modifier);
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| 140 | IDiscreteDoubleValueModifier linearModifier = ComparisonFactorModifierParameter.ValidValues.FirstOrDefault(x => x.GetType().Name.Equals("LinearDiscreteDoubleValueModifier"));
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| 141 | if (linearModifier != null) ComparisonFactorModifierParameter.Value = linearModifier;
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| 142 | ParameterizeComparisonFactorModifiers();
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| 143 | }
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| 144 |
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| 145 | public override IDeepCloneable Clone(Cloner cloner) {
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| 146 | return new UnwantedMutationsComparator(this, cloner);
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| 147 | }
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| 148 |
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| 149 | private void ParameterizeComparisonFactorModifiers() {
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| 150 | //TODO: does not work if Generations parameter names are changed
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| 151 | foreach (IDiscreteDoubleValueModifier modifier in ComparisonFactorModifierParameter.ValidValues) {
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| 152 | modifier.IndexParameter.ActualName = "Generations";
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| 153 | modifier.EndIndexParameter.ActualName = "MaximumGenerations";
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| 154 | modifier.EndValueParameter.ActualName = ComparisonFactorUpperBoundParameter.Name;
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| 155 | modifier.StartIndexParameter.Value = new IntValue(0);
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| 156 | modifier.StartValueParameter.ActualName = ComparisonFactorLowerBoundParameter.Name;
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| 157 | modifier.ValueParameter.ActualName = "DiversityComparisonFactor";
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| 158 | }
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| 159 | }
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| 160 |
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| 161 | public override IOperation Apply() {
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| 162 | ItemArray<DoubleValue> rightQualities = RightSideParameter.ActualValue;
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| 163 | if (rightQualities.Length < 1) throw new InvalidOperationException(Name + ": No subscopes found.");
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| 164 | double compFact = ComparisonFactorParameter.ActualValue.Value;
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| 165 | double diversityComFact = DiversityComparisonFactorParameter.ActualValue.Value;
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| 166 | bool maximization = MaximizationParameter.ActualValue.Value;
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| 167 | double leftQuality = LeftSideParameter.ActualValue.Value;
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| 168 | double threshold = 0;
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| 169 |
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| 170 | DataTable spDetailsTable;
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| 171 | if (ResultsParameter.ActualValue.ContainsKey(spDetailsParameterName)) {
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| 172 | spDetailsTable = (DataTable)ResultsParameter.ActualValue[spDetailsParameterName].Value;
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| 173 | } else {
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| 174 | spDetailsTable = new DataTable(spDetailsParameterName);
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| 175 | spDetailsTable.Rows.Add(new DataRow(divDataRowName));
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| 176 | spDetailsTable.Rows.Add(new DataRow(qualityDataRowName));
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| 177 | spDetailsTable.Rows.Add(new DataRow(overallCountDataRowName));
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| 178 | spDetailsTable.Rows.Add(new DataRow(successCountDataRowName));
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| 179 | spDetailsTable.Rows.Add(new DataRow(divFailDataRowName));
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| 180 | spDetailsTable.Rows.Add(new DataRow(qualityFailDataRowName));
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| 181 | spDetailsTable.Rows.Add(new DataRow(unwantedMutationsDataRowName));
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| 182 | ResultsParameter.ActualValue.Add(new Result(spDetailsParameterName, spDetailsTable));
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| 183 | }
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| 184 |
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| 185 | if (GenerationsParameter.ActualValue.Value != currentGeneration) {
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| 186 | spDetailsTable.Rows[divDataRowName].Values.Add(divCount);
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| 187 | divCount = 0;
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| 188 | spDetailsTable.Rows[qualityDataRowName].Values.Add(qualityCount);
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| 189 | qualityCount = 0;
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| 190 | spDetailsTable.Rows[overallCountDataRowName].Values.Add(overallCount);
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| 191 | spDetailsTable.Rows[successCountDataRowName].Values.Add(successCount);
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| 192 | successCount = 0;
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| 193 | spDetailsTable.Rows[qualityFailDataRowName].Values.Add(badQualityCount);
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| 194 | badQualityCount = 0;
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| 195 | spDetailsTable.Rows[divFailDataRowName].Values.Add(badDivCount);
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| 196 | badDivCount = 0;
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| 197 | if (overallCount != 0) {
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| 198 | spDetailsTable.Rows[unwantedMutationsDataRowName].Values.Add(umRatio / (double)overallCount);
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| 199 | }
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| 200 | umRatio = 0.0;
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| 201 | overallCount = 0;
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| 202 | currentGeneration = GenerationsParameter.ActualValue.Value;
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| 203 | }
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| 204 |
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| 205 | string solutionVariableName = ((ISingleObjectiveSolutionSimilarityCalculator)SimilarityCalculator).SolutionVariableName;
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| 206 | double resultVal = AnalyzeUnwantedMutations(ExecutionContext.Scope.SubScopes[0],
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| 207 | ExecutionContext.Scope.SubScopes[1], ExecutionContext.Scope, solutionVariableName);
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| 208 |
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| 209 | bool resultDiversity = resultVal < diversityComFact;
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| 210 | umRatio += resultVal;
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| 211 |
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| 212 | double minQuality = Math.Min(rightQualities[0].Value, rightQualities[1].Value);
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| 213 | double maxQuality = Math.Max(rightQualities[0].Value, rightQualities[1].Value);
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| 214 | if (maximization)
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| 215 | threshold = minQuality + (maxQuality - minQuality) * compFact;
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| 216 | else
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| 217 | threshold = maxQuality - (maxQuality - minQuality) * compFact;
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| 218 |
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| 219 | bool result = maximization && leftQuality > threshold || !maximization && leftQuality < threshold;
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| 220 |
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| 221 | //collect statistics
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| 222 | if (result) {
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| 223 | qualityCount++;
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| 224 | } else {
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| 225 | badQualityCount++;
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| 226 | }
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| 227 | if (resultDiversity) {
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| 228 | divCount++;
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| 229 | } else {
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| 230 | badDivCount++;
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| 231 | }
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| 232 | if (result && resultDiversity) {
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| 233 | successCount++;
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| 234 | }
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| 235 | overallCount++;
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| 236 |
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| 237 | if (EnableDivCriteriaParameter.Value.Value && !EnableQualityCriteriaParameter.Value.Value) {
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| 238 | result = resultDiversity;
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| 239 | }
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| 240 | //use diveristiy criteria or not
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| 241 | if (EnableDivCriteriaParameter.Value.Value && EnableQualityCriteriaParameter.Value.Value) {
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| 242 | result = result && resultDiversity;
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| 243 | }
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| 244 |
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| 245 | BoolValue resultValue = ResultParameter.ActualValue;
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| 246 | if (resultValue == null) {
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| 247 | ResultParameter.ActualValue = new BoolValue(result);
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| 248 | } else {
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| 249 | resultValue.Value = result;
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| 250 | }
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| 251 |
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| 252 | //like the placeholder, though we create child operations
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| 253 | OperationCollection next = new OperationCollection(base.Apply());
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| 254 | IOperator op = ComparisonFactorModifierParameter.Value;
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| 255 | if (op != null)
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| 256 | next.Insert(0, ExecutionContext.CreateChildOperation(op));
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| 257 | return next;
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| 258 | }
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| 259 |
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| 260 | public double AnalyzeUnwantedMutations(IScope parent1, IScope parent2, IScope child, string solutionVariableName) {
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| 261 | Permutation p1 = parent1.Variables[solutionVariableName].Value as Permutation;
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| 262 | Permutation p2 = parent2.Variables[solutionVariableName].Value as Permutation;
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| 263 | Permutation c = child.Variables[solutionVariableName].Value as Permutation;
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| 264 |
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| 265 | return AnalyzeUnwantedMutations(p1, p2, c);
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| 266 | }
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| 267 |
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| 268 | private double AnalyzeUnwantedMutations(Permutation parent1, Permutation parent2, Permutation child) {
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| 269 | int cnt = 0;
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| 270 | int[] edgesP1 = CalculateEdgesVector(parent1);
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| 271 | int[] edgesP2 = CalculateEdgesVector(parent2);
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| 272 | int[] edgesC = CalculateEdgesVector(child);
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| 273 |
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| 274 | for (int i = 0; i < edgesP1.Length; i++) {
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| 275 | if (edgesC[i] != edgesP1[i] &&
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| 276 | edgesC[i] != edgesP2[i] &&
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| 277 | edgesP1[edgesC[i]] != i &&
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| 278 | edgesP2[edgesC[i]] != i) {
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| 279 | cnt += 1;
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| 280 | }
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| 281 | }
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| 282 |
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| 283 | //reverse so that it matches the other diversity charts
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| 284 | return 1.0 - (((double)cnt) / parent1.Length);
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| 285 | }
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| 286 |
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| 287 | //copied from PermutationEqualityComparer
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| 288 | private int[] CalculateEdgesVector(Permutation permutation) {
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| 289 | // transform path representation into adjacency representation
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| 290 | int[] edgesVector = new int[permutation.Length];
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| 291 | for (int i = 0; i < permutation.Length - 1; i++)
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| 292 | edgesVector[permutation[i]] = permutation[i + 1];
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| 293 | edgesVector[permutation[permutation.Length - 1]] = permutation[0];
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| 294 | return edgesVector;
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| 295 | }
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| 296 | }
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| 297 | }
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