source: branches/ScatterSearch (trunk integration)/HeuristicLab.Algorithms.DataAnalysis/3.4/NearestNeighbour/NearestNeighbourClassification.cs @ 8331

#region License Information
/* HeuristicLab
 * Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
 *
 * This file is part of HeuristicLab.
 *
 * HeuristicLab is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * HeuristicLab is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
 */
#endregion

using System;
using System.Collections.Generic;
using System.Linq;
using HeuristicLab.Common;
using HeuristicLab.Core;
using HeuristicLab.Data;
using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
using HeuristicLab.Optimization;
using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
using HeuristicLab.Problems.DataAnalysis;
using HeuristicLab.Problems.DataAnalysis.Symbolic;
using HeuristicLab.Problems.DataAnalysis.Symbolic.Regression;
using HeuristicLab.Parameters;

namespace HeuristicLab.Algorithms.DataAnalysis {
  /// <summary>
  /// Nearest neighbour classification data analysis algorithm.
  /// </summary>
  [Item("Nearest Neighbour Classification", "Nearest neighbour classification data analysis algorithm (wrapper for ALGLIB).")]
  [Creatable("Data Analysis")]
  [StorableClass]
  public sealed class NearestNeighbourClassification : FixedDataAnalysisAlgorithm<IClassificationProblem> {
    private const string KParameterName = "K";
    private const string NearestNeighbourClassificationModelResultName = "Nearest neighbour classification solution";

    #region parameter properties
    public IFixedValueParameter<IntValue> KParameter {
      get { return (IFixedValueParameter<IntValue>)Parameters[KParameterName]; }
    }
    #endregion
    #region properties
    public int K {
      get { return KParameter.Value.Value; }
      set {
        if (value <= 0) throw new ArgumentException("K must be larger than zero.", "K");
        else KParameter.Value.Value = value;
      }
    }
    #endregion

    [StorableConstructor]
    private NearestNeighbourClassification(bool deserializing) : base(deserializing) { }
    private NearestNeighbourClassification(NearestNeighbourClassification original, Cloner cloner)
      : base(original, cloner) {
    }
    public NearestNeighbourClassification()
      : base() {
      Parameters.Add(new FixedValueParameter<IntValue>(KParameterName, "The number of nearest neighbours to consider for regression.", new IntValue(3)));
      Problem = new ClassificationProblem();
    }
    [StorableHook(HookType.AfterDeserialization)]
    private void AfterDeserialization() { }

    public override IDeepCloneable Clone(Cloner cloner) {
      return new NearestNeighbourClassification(this, cloner);
    }

    #region nearest neighbour
    protected override void Run() {
      var solution = CreateNearestNeighbourClassificationSolution(Problem.ProblemData, K);
      Results.Add(new Result(NearestNeighbourClassificationModelResultName, "The nearest neighbour classification solution.", solution));
    }

    public static IClassificationSolution CreateNearestNeighbourClassificationSolution(IClassificationProblemData problemData, int k) {
      Dataset dataset = problemData.Dataset;
      string targetVariable = problemData.TargetVariable;
      IEnumerable<string> allowedInputVariables = problemData.AllowedInputVariables;
      IEnumerable<int> rows = problemData.TrainingIndices;
      double[,] inputMatrix = AlglibUtil.PrepareInputMatrix(dataset, allowedInputVariables.Concat(new string[] { targetVariable }), rows);
      if (inputMatrix.Cast<double>().Any(x => double.IsNaN(x) || double.IsInfinity(x)))
        throw new NotSupportedException("Nearest neighbour classification does not support NaN or infinity values in the input dataset.");

      alglib.nearestneighbor.kdtree kdtree = new alglib.nearestneighbor.kdtree();

      int nRows = inputMatrix.GetLength(0);
      int nFeatures = inputMatrix.GetLength(1) - 1;
      double[] classValues = dataset.GetDoubleValues(targetVariable).Distinct().OrderBy(x => x).ToArray();
      int nClasses = classValues.Count();
      // map original class values to values [0..nClasses-1]
      Dictionary<double, double> classIndices = new Dictionary<double, double>();
      for (int i = 0; i < nClasses; i++) {
        classIndices[classValues[i]] = i;
      }
      for (int row = 0; row < nRows; row++) {
        inputMatrix[row, nFeatures] = classIndices[inputMatrix[row, nFeatures]];
      }
      alglib.nearestneighbor.kdtreebuild(inputMatrix, nRows, inputMatrix.GetLength(1) - 1, 1, 2, kdtree);
      var problemDataClone = (IClassificationProblemData) problemData.Clone();
      return new NearestNeighbourClassificationSolution(problemDataClone, new NearestNeighbourModel(kdtree, k, targetVariable, allowedInputVariables, problemDataClone.ClassValues.ToArray()));
    }
    #endregion
  }
}