[5571] | 1 | #region License Information
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| 2 | /* HeuristicLab
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[7290] | 3 | * Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
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[5571] | 4 | *
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| 5 | * This file is part of HeuristicLab.
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| 6 | *
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| 7 | * HeuristicLab is free software: you can redistribute it and/or modify
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| 8 | * it under the terms of the GNU General Public License as published by
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| 9 | * the Free Software Foundation, either version 3 of the License, or
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| 10 | * (at your option) any later version.
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| 11 | *
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| 12 | * HeuristicLab is distributed in the hope that it will be useful,
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| 13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 15 | * GNU General Public License for more details.
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| 16 | *
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| 17 | * You should have received a copy of the GNU General Public License
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| 18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
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| 19 | */
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| 20 | #endregion
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| 21 |
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| 22 | using System;
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| 23 | using System.Collections.Generic;
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| 24 | using HeuristicLab.Common;
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| 25 | using HeuristicLab.Core;
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[6740] | 26 | using HeuristicLab.Data;
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[5571] | 27 | using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
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[6740] | 28 | using HeuristicLab.Parameters;
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[5571] | 29 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
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| 30 |
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| 31 | namespace HeuristicLab.Problems.DataAnalysis.Symbolic {
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| 32 | [StorableClass]
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| 33 | [Item("SymbolicDataAnalysisExpressionTreeInterpreter", "Interpreter for symbolic expression trees including automatically defined functions.")]
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[5749] | 34 | public sealed class SymbolicDataAnalysisExpressionTreeInterpreter : ParameterizedNamedItem, ISymbolicDataAnalysisExpressionTreeInterpreter {
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| 35 | private const string CheckExpressionsWithIntervalArithmeticParameterName = "CheckExpressionsWithIntervalArithmetic";
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| 36 | #region private classes
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[5571] | 37 | private class InterpreterState {
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| 38 | private double[] argumentStack;
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| 39 | private int argumentStackPointer;
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| 40 | private Instruction[] code;
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| 41 | private int pc;
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| 42 | public int ProgramCounter {
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| 43 | get { return pc; }
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| 44 | set { pc = value; }
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| 45 | }
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[5987] | 46 | internal InterpreterState(Instruction[] code, int argumentStackSize) {
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[5571] | 47 | this.code = code;
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| 48 | this.pc = 0;
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[5987] | 49 | if (argumentStackSize > 0) {
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| 50 | this.argumentStack = new double[argumentStackSize];
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| 51 | }
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[5571] | 52 | this.argumentStackPointer = 0;
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| 53 | }
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| 54 |
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| 55 | internal void Reset() {
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| 56 | this.pc = 0;
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| 57 | this.argumentStackPointer = 0;
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| 58 | }
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| 59 |
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| 60 | internal Instruction NextInstruction() {
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| 61 | return code[pc++];
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| 62 | }
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| 63 | private void Push(double val) {
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| 64 | argumentStack[argumentStackPointer++] = val;
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| 65 | }
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| 66 | private double Pop() {
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| 67 | return argumentStack[--argumentStackPointer];
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| 68 | }
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| 69 |
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| 70 | internal void CreateStackFrame(double[] argValues) {
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| 71 | // push in reverse order to make indexing easier
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| 72 | for (int i = argValues.Length - 1; i >= 0; i--) {
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| 73 | argumentStack[argumentStackPointer++] = argValues[i];
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| 74 | }
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| 75 | Push(argValues.Length);
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| 76 | }
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| 77 |
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| 78 | internal void RemoveStackFrame() {
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| 79 | int size = (int)Pop();
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| 80 | argumentStackPointer -= size;
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| 81 | }
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| 82 |
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| 83 | internal double GetStackFrameValue(ushort index) {
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| 84 | // layout of stack:
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| 85 | // [0] <- argumentStackPointer
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| 86 | // [StackFrameSize = N + 1]
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| 87 | // [Arg0] <- argumentStackPointer - 2 - 0
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| 88 | // [Arg1] <- argumentStackPointer - 2 - 1
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| 89 | // [...]
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| 90 | // [ArgN] <- argumentStackPointer - 2 - N
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| 91 | // <Begin of stack frame>
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| 92 | return argumentStack[argumentStackPointer - index - 2];
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| 93 | }
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| 94 | }
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| 95 | private class OpCodes {
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| 96 | public const byte Add = 1;
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| 97 | public const byte Sub = 2;
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| 98 | public const byte Mul = 3;
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| 99 | public const byte Div = 4;
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| 100 |
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| 101 | public const byte Sin = 5;
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| 102 | public const byte Cos = 6;
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| 103 | public const byte Tan = 7;
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| 104 |
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| 105 | public const byte Log = 8;
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| 106 | public const byte Exp = 9;
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| 107 |
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| 108 | public const byte IfThenElse = 10;
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| 109 |
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| 110 | public const byte GT = 11;
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| 111 | public const byte LT = 12;
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| 112 |
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| 113 | public const byte AND = 13;
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| 114 | public const byte OR = 14;
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| 115 | public const byte NOT = 15;
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| 116 |
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| 117 |
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| 118 | public const byte Average = 16;
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| 119 |
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| 120 | public const byte Call = 17;
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| 121 |
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| 122 | public const byte Variable = 18;
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| 123 | public const byte LagVariable = 19;
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| 124 | public const byte Constant = 20;
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| 125 | public const byte Arg = 21;
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| 126 |
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| 127 | public const byte Power = 22;
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| 128 | public const byte Root = 23;
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| 129 | public const byte TimeLag = 24;
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| 130 | public const byte Integral = 25;
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| 131 | public const byte Derivative = 26;
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| 132 |
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| 133 | public const byte VariableCondition = 27;
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| 134 | }
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[5749] | 135 | #endregion
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[5571] | 136 |
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| 137 | private Dictionary<Type, byte> symbolToOpcode = new Dictionary<Type, byte>() {
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| 138 | { typeof(Addition), OpCodes.Add },
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| 139 | { typeof(Subtraction), OpCodes.Sub },
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| 140 | { typeof(Multiplication), OpCodes.Mul },
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| 141 | { typeof(Division), OpCodes.Div },
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| 142 | { typeof(Sine), OpCodes.Sin },
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| 143 | { typeof(Cosine), OpCodes.Cos },
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| 144 | { typeof(Tangent), OpCodes.Tan },
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| 145 | { typeof(Logarithm), OpCodes.Log },
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| 146 | { typeof(Exponential), OpCodes.Exp },
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| 147 | { typeof(IfThenElse), OpCodes.IfThenElse },
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| 148 | { typeof(GreaterThan), OpCodes.GT },
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| 149 | { typeof(LessThan), OpCodes.LT },
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| 150 | { typeof(And), OpCodes.AND },
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| 151 | { typeof(Or), OpCodes.OR },
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| 152 | { typeof(Not), OpCodes.NOT},
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| 153 | { typeof(Average), OpCodes.Average},
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| 154 | { typeof(InvokeFunction), OpCodes.Call },
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| 155 | { typeof(HeuristicLab.Problems.DataAnalysis.Symbolic.Variable), OpCodes.Variable },
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| 156 | { typeof(LaggedVariable), OpCodes.LagVariable },
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| 157 | { typeof(Constant), OpCodes.Constant },
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| 158 | { typeof(Argument), OpCodes.Arg },
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| 159 | { typeof(Power),OpCodes.Power},
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| 160 | { typeof(Root),OpCodes.Root},
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| 161 | { typeof(TimeLag), OpCodes.TimeLag},
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| 162 | { typeof(Integral), OpCodes.Integral},
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| 163 | { typeof(Derivative), OpCodes.Derivative},
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| 164 | { typeof(VariableCondition),OpCodes.VariableCondition}
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| 165 | };
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| 166 |
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| 167 | public override bool CanChangeName {
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| 168 | get { return false; }
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| 169 | }
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| 170 | public override bool CanChangeDescription {
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| 171 | get { return false; }
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| 172 | }
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| 173 |
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[5749] | 174 | #region parameter properties
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| 175 | public IValueParameter<BoolValue> CheckExpressionsWithIntervalArithmeticParameter {
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| 176 | get { return (IValueParameter<BoolValue>)Parameters[CheckExpressionsWithIntervalArithmeticParameterName]; }
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| 177 | }
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| 178 | #endregion
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| 179 |
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| 180 | #region properties
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| 181 | public BoolValue CheckExpressionsWithIntervalArithmetic {
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| 182 | get { return CheckExpressionsWithIntervalArithmeticParameter.Value; }
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| 183 | set { CheckExpressionsWithIntervalArithmeticParameter.Value = value; }
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| 184 | }
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| 185 | #endregion
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| 186 |
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| 187 |
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[5571] | 188 | [StorableConstructor]
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| 189 | private SymbolicDataAnalysisExpressionTreeInterpreter(bool deserializing) : base(deserializing) { }
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| 190 | private SymbolicDataAnalysisExpressionTreeInterpreter(SymbolicDataAnalysisExpressionTreeInterpreter original, Cloner cloner) : base(original, cloner) { }
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| 191 | public override IDeepCloneable Clone(Cloner cloner) {
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| 192 | return new SymbolicDataAnalysisExpressionTreeInterpreter(this, cloner);
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| 193 | }
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| 194 |
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| 195 | public SymbolicDataAnalysisExpressionTreeInterpreter()
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[5749] | 196 | : base("SymbolicDataAnalysisExpressionTreeInterpreter", "Interpreter for symbolic expression trees including automatically defined functions.") {
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| 197 | Parameters.Add(new ValueParameter<BoolValue>(CheckExpressionsWithIntervalArithmeticParameterName, "Switch that determines if the interpreter checks the validity of expressions with interval arithmetic before evaluating the expression.", new BoolValue(false)));
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[5571] | 198 | }
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| 199 |
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| 200 | public IEnumerable<double> GetSymbolicExpressionTreeValues(ISymbolicExpressionTree tree, Dataset dataset, IEnumerable<int> rows) {
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[5749] | 201 | if (CheckExpressionsWithIntervalArithmetic.Value)
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| 202 | throw new NotSupportedException("Interval arithmetic is not yet supported in the symbolic data analysis interpreter.");
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[5571] | 203 | var compiler = new SymbolicExpressionTreeCompiler();
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| 204 | Instruction[] code = compiler.Compile(tree, MapSymbolToOpCode);
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[5987] | 205 | int necessaryArgStackSize = 0;
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[5571] | 206 | for (int i = 0; i < code.Length; i++) {
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| 207 | Instruction instr = code[i];
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[6860] | 208 | if (instr.opCode == OpCodes.Variable) {
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[5571] | 209 | var variableTreeNode = instr.dynamicNode as VariableTreeNode;
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[6740] | 210 | instr.iArg0 = dataset.GetReadOnlyDoubleValues(variableTreeNode.VariableName);
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[5897] | 211 | code[i] = instr;
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[5571] | 212 | } else if (instr.opCode == OpCodes.LagVariable) {
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[6740] | 213 | var laggedVariableTreeNode = instr.dynamicNode as LaggedVariableTreeNode;
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| 214 | instr.iArg0 = dataset.GetReadOnlyDoubleValues(laggedVariableTreeNode.VariableName);
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[5897] | 215 | code[i] = instr;
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[6860] | 216 | } else if (instr.opCode == OpCodes.VariableCondition) {
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[5571] | 217 | var variableConditionTreeNode = instr.dynamicNode as VariableConditionTreeNode;
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[6740] | 218 | instr.iArg0 = dataset.GetReadOnlyDoubleValues(variableConditionTreeNode.VariableName);
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[5987] | 219 | } else if (instr.opCode == OpCodes.Call) {
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| 220 | necessaryArgStackSize += instr.nArguments + 1;
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[5571] | 221 | }
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| 222 | }
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[5987] | 223 | var state = new InterpreterState(code, necessaryArgStackSize);
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[5571] | 224 |
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| 225 | foreach (var rowEnum in rows) {
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| 226 | int row = rowEnum;
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| 227 | state.Reset();
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| 228 | yield return Evaluate(dataset, ref row, state);
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| 229 | }
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| 230 | }
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| 231 |
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| 232 | private double Evaluate(Dataset dataset, ref int row, InterpreterState state) {
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| 233 | Instruction currentInstr = state.NextInstruction();
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| 234 | switch (currentInstr.opCode) {
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| 235 | case OpCodes.Add: {
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| 236 | double s = Evaluate(dataset, ref row, state);
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| 237 | for (int i = 1; i < currentInstr.nArguments; i++) {
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| 238 | s += Evaluate(dataset, ref row, state);
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| 239 | }
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| 240 | return s;
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| 241 | }
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| 242 | case OpCodes.Sub: {
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| 243 | double s = Evaluate(dataset, ref row, state);
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| 244 | for (int i = 1; i < currentInstr.nArguments; i++) {
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| 245 | s -= Evaluate(dataset, ref row, state);
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| 246 | }
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| 247 | if (currentInstr.nArguments == 1) s = -s;
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| 248 | return s;
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| 249 | }
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| 250 | case OpCodes.Mul: {
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| 251 | double p = Evaluate(dataset, ref row, state);
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| 252 | for (int i = 1; i < currentInstr.nArguments; i++) {
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| 253 | p *= Evaluate(dataset, ref row, state);
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| 254 | }
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| 255 | return p;
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| 256 | }
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| 257 | case OpCodes.Div: {
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| 258 | double p = Evaluate(dataset, ref row, state);
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| 259 | for (int i = 1; i < currentInstr.nArguments; i++) {
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| 260 | p /= Evaluate(dataset, ref row, state);
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| 261 | }
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| 262 | if (currentInstr.nArguments == 1) p = 1.0 / p;
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| 263 | return p;
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| 264 | }
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| 265 | case OpCodes.Average: {
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| 266 | double sum = Evaluate(dataset, ref row, state);
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| 267 | for (int i = 1; i < currentInstr.nArguments; i++) {
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| 268 | sum += Evaluate(dataset, ref row, state);
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| 269 | }
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| 270 | return sum / currentInstr.nArguments;
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| 271 | }
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| 272 | case OpCodes.Cos: {
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| 273 | return Math.Cos(Evaluate(dataset, ref row, state));
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| 274 | }
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| 275 | case OpCodes.Sin: {
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| 276 | return Math.Sin(Evaluate(dataset, ref row, state));
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| 277 | }
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| 278 | case OpCodes.Tan: {
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| 279 | return Math.Tan(Evaluate(dataset, ref row, state));
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| 280 | }
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| 281 | case OpCodes.Power: {
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| 282 | double x = Evaluate(dataset, ref row, state);
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| 283 | double y = Math.Round(Evaluate(dataset, ref row, state));
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| 284 | return Math.Pow(x, y);
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| 285 | }
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| 286 | case OpCodes.Root: {
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| 287 | double x = Evaluate(dataset, ref row, state);
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| 288 | double y = Math.Round(Evaluate(dataset, ref row, state));
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| 289 | return Math.Pow(x, 1 / y);
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| 290 | }
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| 291 | case OpCodes.Exp: {
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| 292 | return Math.Exp(Evaluate(dataset, ref row, state));
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| 293 | }
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| 294 | case OpCodes.Log: {
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| 295 | return Math.Log(Evaluate(dataset, ref row, state));
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| 296 | }
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| 297 | case OpCodes.IfThenElse: {
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| 298 | double condition = Evaluate(dataset, ref row, state);
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| 299 | double result;
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| 300 | if (condition > 0.0) {
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| 301 | result = Evaluate(dataset, ref row, state); SkipInstructions(state);
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| 302 | } else {
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| 303 | SkipInstructions(state); result = Evaluate(dataset, ref row, state);
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| 304 | }
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| 305 | return result;
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| 306 | }
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| 307 | case OpCodes.AND: {
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| 308 | double result = Evaluate(dataset, ref row, state);
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| 309 | for (int i = 1; i < currentInstr.nArguments; i++) {
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[6732] | 310 | if (result > 0.0) result = Evaluate(dataset, ref row, state);
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[5571] | 311 | else {
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[6732] | 312 | SkipInstructions(state);
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[5571] | 313 | }
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| 314 | }
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[6732] | 315 | return result > 0.0 ? 1.0 : -1.0;
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[5571] | 316 | }
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| 317 | case OpCodes.OR: {
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| 318 | double result = Evaluate(dataset, ref row, state);
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| 319 | for (int i = 1; i < currentInstr.nArguments; i++) {
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[6732] | 320 | if (result <= 0.0) result = Evaluate(dataset, ref row, state);
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[5571] | 321 | else {
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[6732] | 322 | SkipInstructions(state);
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[5571] | 323 | }
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| 324 | }
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| 325 | return result > 0.0 ? 1.0 : -1.0;
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| 326 | }
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| 327 | case OpCodes.NOT: {
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[5574] | 328 | return Evaluate(dataset, ref row, state) > 0.0 ? -1.0 : 1.0;
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[5571] | 329 | }
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| 330 | case OpCodes.GT: {
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| 331 | double x = Evaluate(dataset, ref row, state);
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| 332 | double y = Evaluate(dataset, ref row, state);
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| 333 | if (x > y) return 1.0;
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| 334 | else return -1.0;
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| 335 | }
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| 336 | case OpCodes.LT: {
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| 337 | double x = Evaluate(dataset, ref row, state);
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| 338 | double y = Evaluate(dataset, ref row, state);
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| 339 | if (x < y) return 1.0;
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| 340 | else return -1.0;
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| 341 | }
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| 342 | case OpCodes.TimeLag: {
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| 343 | var timeLagTreeNode = (LaggedTreeNode)currentInstr.dynamicNode;
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| 344 | row += timeLagTreeNode.Lag;
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| 345 | double result = Evaluate(dataset, ref row, state);
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| 346 | row -= timeLagTreeNode.Lag;
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| 347 | return result;
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| 348 | }
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| 349 | case OpCodes.Integral: {
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| 350 | int savedPc = state.ProgramCounter;
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| 351 | var timeLagTreeNode = (LaggedTreeNode)currentInstr.dynamicNode;
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| 352 | double sum = 0.0;
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| 353 | for (int i = 0; i < Math.Abs(timeLagTreeNode.Lag); i++) {
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| 354 | row += Math.Sign(timeLagTreeNode.Lag);
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| 355 | sum += Evaluate(dataset, ref row, state);
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| 356 | state.ProgramCounter = savedPc;
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| 357 | }
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| 358 | row -= timeLagTreeNode.Lag;
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| 359 | sum += Evaluate(dataset, ref row, state);
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| 360 | return sum;
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| 361 | }
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| 362 |
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| 363 | //mkommend: derivate calculation taken from:
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| 364 | //http://www.holoborodko.com/pavel/numerical-methods/numerical-derivative/smooth-low-noise-differentiators/
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| 365 | //one sided smooth differentiatior, N = 4
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| 366 | // y' = 1/8h (f_i + 2f_i-1, -2 f_i-3 - f_i-4)
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| 367 | case OpCodes.Derivative: {
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| 368 | int savedPc = state.ProgramCounter;
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[5925] | 369 | double f_0 = Evaluate(dataset, ref row, state); row--;
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[5571] | 370 | state.ProgramCounter = savedPc;
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[5925] | 371 | double f_1 = Evaluate(dataset, ref row, state); row -= 2;
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[5571] | 372 | state.ProgramCounter = savedPc;
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[5925] | 373 | double f_3 = Evaluate(dataset, ref row, state); row--;
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[5571] | 374 | state.ProgramCounter = savedPc;
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[5987] | 375 | double f_4 = Evaluate(dataset, ref row, state);
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[5571] | 376 | row += 4;
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| 377 |
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| 378 | return (f_0 + 2 * f_1 - 2 * f_3 - f_4) / 8; // h = 1
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| 379 | }
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| 380 | case OpCodes.Call: {
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| 381 | // evaluate sub-trees
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| 382 | double[] argValues = new double[currentInstr.nArguments];
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| 383 | for (int i = 0; i < currentInstr.nArguments; i++) {
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| 384 | argValues[i] = Evaluate(dataset, ref row, state);
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| 385 | }
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| 386 | // push on argument values on stack
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| 387 | state.CreateStackFrame(argValues);
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| 388 |
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| 389 | // save the pc
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| 390 | int savedPc = state.ProgramCounter;
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| 391 | // set pc to start of function
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[6740] | 392 | state.ProgramCounter = (ushort)currentInstr.iArg0;
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[5571] | 393 | // evaluate the function
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| 394 | double v = Evaluate(dataset, ref row, state);
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| 395 |
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| 396 | // delete the stack frame
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| 397 | state.RemoveStackFrame();
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| 398 |
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| 399 | // restore the pc => evaluation will continue at point after my subtrees
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| 400 | state.ProgramCounter = savedPc;
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| 401 | return v;
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| 402 | }
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| 403 | case OpCodes.Arg: {
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[6740] | 404 | return state.GetStackFrameValue((ushort)currentInstr.iArg0);
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[5571] | 405 | }
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| 406 | case OpCodes.Variable: {
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[5923] | 407 | if (row < 0 || row >= dataset.Rows)
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| 408 | return double.NaN;
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[6740] | 409 | var variableTreeNode = (VariableTreeNode)currentInstr.dynamicNode;
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| 410 | return ((IList<double>)currentInstr.iArg0)[row] * variableTreeNode.Weight;
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[5571] | 411 | }
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| 412 | case OpCodes.LagVariable: {
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[6740] | 413 | var laggedVariableTreeNode = (LaggedVariableTreeNode)currentInstr.dynamicNode;
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[5571] | 414 | int actualRow = row + laggedVariableTreeNode.Lag;
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[5923] | 415 | if (actualRow < 0 || actualRow >= dataset.Rows)
|
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| 416 | return double.NaN;
|
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[6769] | 417 | return ((IList<double>)currentInstr.iArg0)[actualRow] * laggedVariableTreeNode.Weight;
|
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[5571] | 418 | }
|
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| 419 | case OpCodes.Constant: {
|
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[5897] | 420 | var constTreeNode = currentInstr.dynamicNode as ConstantTreeNode;
|
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| 421 | return constTreeNode.Value;
|
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[5571] | 422 | }
|
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| 423 |
|
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| 424 | //mkommend: this symbol uses the logistic function f(x) = 1 / (1 + e^(-alpha * x) )
|
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| 425 | //to determine the relative amounts of the true and false branch see http://en.wikipedia.org/wiki/Logistic_function
|
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| 426 | case OpCodes.VariableCondition: {
|
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[5923] | 427 | if (row < 0 || row >= dataset.Rows)
|
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| 428 | return double.NaN;
|
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[5571] | 429 | var variableConditionTreeNode = (VariableConditionTreeNode)currentInstr.dynamicNode;
|
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[6740] | 430 | double variableValue = ((IList<double>)currentInstr.iArg0)[row];
|
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[5897] | 431 | double x = variableValue - variableConditionTreeNode.Threshold;
|
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[5571] | 432 | double p = 1 / (1 + Math.Exp(-variableConditionTreeNode.Slope * x));
|
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| 433 |
|
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| 434 | double trueBranch = Evaluate(dataset, ref row, state);
|
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| 435 | double falseBranch = Evaluate(dataset, ref row, state);
|
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| 436 |
|
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| 437 | return trueBranch * p + falseBranch * (1 - p);
|
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| 438 | }
|
---|
| 439 | default: throw new NotSupportedException();
|
---|
| 440 | }
|
---|
| 441 | }
|
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| 442 |
|
---|
| 443 | private byte MapSymbolToOpCode(ISymbolicExpressionTreeNode treeNode) {
|
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[6860] | 444 | if (symbolToOpcode.ContainsKey(treeNode.Symbol.GetType()))
|
---|
| 445 | return symbolToOpcode[treeNode.Symbol.GetType()];
|
---|
| 446 | else
|
---|
| 447 | throw new NotSupportedException("Symbol: " + treeNode.Symbol);
|
---|
[5571] | 448 | }
|
---|
| 449 |
|
---|
| 450 | // skips a whole branch
|
---|
| 451 | private void SkipInstructions(InterpreterState state) {
|
---|
| 452 | int i = 1;
|
---|
| 453 | while (i > 0) {
|
---|
| 454 | i += state.NextInstruction().nArguments;
|
---|
| 455 | i--;
|
---|
| 456 | }
|
---|
| 457 | }
|
---|
| 458 | }
|
---|
| 459 | }
|
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