[13368] | 1 | #region License Information
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[10039] | 2 | /* HeuristicLab
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[12012] | 3 | * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
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[10039] | 4 | *
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| 5 | * This file is part of HeuristicLab.
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| 6 | *
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| 7 | * HeuristicLab is free software: you can redistribute it and/or modify
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| 8 | * it under the terms of the GNU General Public License as published by
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| 9 | * the Free Software Foundation, either version 3 of the License, or
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| 10 | * (at your option) any later version.
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| 11 | *
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| 12 | * HeuristicLab is distributed in the hope that it will be useful,
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| 13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 15 | * GNU General Public License for more details.
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| 16 | *
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| 17 | * You should have received a copy of the GNU General Public License
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| 18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
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[10968] | 19 | *
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| 20 | * Author: Sabine Winkler
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[10039] | 21 | */
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| 22 | #endregion
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| 23 |
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[10290] | 24 | using System.Collections.Generic;
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[10039] | 25 | using HeuristicLab.Common;
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| 26 | using HeuristicLab.Core;
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[10290] | 27 | using HeuristicLab.Data;
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[10039] | 28 | using HeuristicLab.Encodings.IntegerVectorEncoding;
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| 29 | using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
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| 30 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
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| 31 |
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| 32 | namespace HeuristicLab.Problems.GrammaticalEvolution {
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[10290] | 33 |
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[10039] | 34 | /// <summary>
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[10068] | 35 | /// Position Independent (PI) Grammatical Evolution Mapper
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[10290] | 36 | /// -----------------------------------------------------------------------------------
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| 37 | /// Standard GE mappers:
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| 38 | /// Rule = Codon Value % Number Of Rules
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| 39 | ///
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| 40 | /// ðGE:
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| 41 | /// ðGE codons consist of (nont, rule) tuples, where nont may be one value from an "order"
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| 42 | /// integer vector and rule may be one value from a "content" integer vector.
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| 43 | ///
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| 44 | /// Order: NT = nont % Num. NT ... determines, which non-terminal to expand next
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| 45 | /// Content: Rule = rule % Num. Rules ... rule determination as with standard GE mappers
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| 46 | ///
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| 47 | /// Four mutation and crossover strategies possible:
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| 48 | /// * Order-only: only "order" vector is modified, "content" vector is fixed (1:0),
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| 49 | /// worst result according to [2]
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| 50 | /// * Content-only: only "content" vector is modified, "order" vector is fixed (0:1),
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| 51 | /// best result according to [2]
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| 52 | /// * ðGE: genetic operators are applied equally (1:1),
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| 53 | /// * Content:Order: genetic operators are applied unequally (e.g. 2:1 or 1:2),
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| 54 | ///
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| 55 | /// Here, the "content-only" strategy is implemented, as it is the best solution according to [2]
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| 56 | /// and it does not require much to change in the problem and evaluator classes.
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| 57 | ///
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[10039] | 58 | /// </summary>
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[10290] | 59 | /// <remarks>
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| 60 | /// Described in
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| 61 | ///
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| 62 | /// [1] Michael OâNeill et al. ðGrammatical Evolution. In: GECCO 2004.
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| 63 | /// Vol. 3103. LNCS. Heidelberg: Springer-Verlag Berlin, 2004, pp. 617â629.
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| 64 | /// url: http://dynamics.org/Altenberg/UH_ICS/EC_REFS/GP_REFS/GECCO/2004/31030617.pdf.
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| 65 | ///
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| 66 | /// [2] David Fagan et al. Investigating Mapping Order in ÏGE. IEEE, 2010
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| 67 | /// url: http://ncra.ucd.ie/papers/pigeWCCI2010.pdf
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| 68 | /// </remarks>
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| 69 | [Item("PIGEMapper", "Position Independent (PI) Grammatical Evolution Mapper")]
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[13368] | 70 | [StorableClass("AED62020-ADCE-481A-9D00-F1D11648E79E")]
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[10039] | 71 | public class PIGEMapper : GenotypeToPhenotypeMapper {
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[10068] | 72 |
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[10974] | 73 | private object nontVectorLocker = new object();
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[10290] | 74 | private IntegerVector nontVector;
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| 75 |
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| 76 | public IntegerVector NontVector {
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| 77 | get { return nontVector; }
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| 78 | set { nontVector = value; }
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| 79 | }
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| 80 |
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[10974] | 81 | private static IntegerVector GetNontVector(IRandom random, IntMatrix bounds, int length) {
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[10290] | 82 | IntegerVector v = new IntegerVector(length);
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| 83 | v.Randomize(random, bounds);
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| 84 | return v;
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| 85 | }
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| 86 |
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[10039] | 87 | [StorableConstructor]
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| 88 | protected PIGEMapper(bool deserializing) : base(deserializing) { }
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| 89 | protected PIGEMapper(PIGEMapper original, Cloner cloner) : base(original, cloner) { }
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| 90 | public PIGEMapper() : base() { }
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| 91 |
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| 92 | public override IDeepCloneable Clone(Cloner cloner) {
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| 93 | return new PIGEMapper(this, cloner);
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| 94 | }
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[10068] | 95 |
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| 96 |
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[10039] | 97 | /// <summary>
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| 98 | /// Maps a genotype (an integer vector) to a phenotype (a symbolic expression tree).
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| 99 | /// PIGE approach.
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| 100 | /// </summary>
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[10280] | 101 | /// <param name="random">random number generator</param>
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[10328] | 102 | /// <param name="bounds">integer number range for genomes (codons) of the nont vector</param>
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| 103 | /// <param name="length">length of the nont vector to create</param>
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[10039] | 104 | /// <param name="grammar">grammar definition</param>
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| 105 | /// <param name="genotype">integer vector, which should be mapped to a tree</param>
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| 106 | /// <returns>phenotype (a symbolic expression tree)</returns>
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[10290] | 107 | public override SymbolicExpressionTree Map(IRandom random, IntMatrix bounds, int length,
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[10280] | 108 | ISymbolicExpressionGrammar grammar,
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[10039] | 109 | IntegerVector genotype) {
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[10068] | 110 |
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[10039] | 111 | SymbolicExpressionTree tree = new SymbolicExpressionTree();
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[10068] | 112 | var rootNode = (SymbolicExpressionTreeTopLevelNode)grammar.ProgramRootSymbol.CreateTreeNode();
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[10039] | 113 | var startNode = (SymbolicExpressionTreeTopLevelNode)grammar.StartSymbol.CreateTreeNode();
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| 114 | rootNode.AddSubtree(startNode);
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| 115 | tree.Root = rootNode;
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[10068] | 116 |
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[10974] | 117 | // Map can be called simultaniously on multiple threads
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| 118 | lock (nontVectorLocker) {
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| 119 | if (NontVector == null) {
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| 120 | NontVector = GetNontVector(random, bounds, length);
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| 121 | }
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[10290] | 122 | }
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[10068] | 123 |
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[10290] | 124 | MapPIGEIteratively(startNode, genotype, grammar,
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| 125 | genotype.Length, random);
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| 126 |
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[10039] | 127 | return tree;
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| 128 | }
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[10290] | 129 |
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| 130 |
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[10328] | 131 | /// <summary>
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| 132 | /// Genotype-to-Phenotype mapper (iterative ðGE approach, using a list of not expanded nonTerminals).
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| 133 | /// </summary>
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| 134 | /// <param name="startNode">first node of the tree with arity 1</param>
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| 135 | /// <param name="genotype">integer vector, which should be mapped to a tree</param>
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| 136 | /// <param name="grammar">grammar to determine the allowed child symbols for each node</param>
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| 137 | /// <param name="maxSubtreeCount">maximum allowed subtrees (= number of used genomes)</param>
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| 138 | /// <param name="random">random number generator</param>
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[10290] | 139 | private void MapPIGEIteratively(ISymbolicExpressionTreeNode startNode,
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| 140 | IntegerVector genotype,
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| 141 | ISymbolicExpressionGrammar grammar,
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| 142 | int maxSubtreeCount, IRandom random) {
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| 143 |
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| 144 | List<ISymbolicExpressionTreeNode> nonTerminals = new List<ISymbolicExpressionTreeNode>();
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| 145 |
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| 146 | int genotypeIndex = 0;
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| 147 | nonTerminals.Add(startNode);
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| 148 |
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| 149 | while (nonTerminals.Count > 0) {
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| 150 |
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| 151 | if (genotypeIndex >= maxSubtreeCount) {
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| 152 | // if all genomes were used, only add terminal nodes to the remaining subtrees
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| 153 | ISymbolicExpressionTreeNode current = nonTerminals[0];
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| 154 | nonTerminals.RemoveAt(0);
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| 155 | current.AddSubtree(GetRandomTerminalNode(current, grammar, random));
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| 156 | } else {
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| 157 | // Order: NT = nont % Num. NT
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| 158 | int nt = NontVector[genotypeIndex] % nonTerminals.Count;
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| 159 | ISymbolicExpressionTreeNode current = nonTerminals[nt];
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| 160 | nonTerminals.RemoveAt(nt);
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| 161 |
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| 162 | // Content: Rule = rule % Num. Rules
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| 163 | ISymbolicExpressionTreeNode newNode = GetNewChildNode(current, genotype, grammar, genotypeIndex, random);
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| 164 | int arity = SampleArity(random, newNode, grammar);
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| 165 |
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| 166 | current.AddSubtree(newNode);
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| 167 | genotypeIndex++;
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| 168 | // new node has subtrees, so add "arity" number of copies of this node to the nonTerminals list
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| 169 | for (int i = 0; i < arity; ++i) {
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| 170 | nonTerminals.Add(newNode);
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| 171 | }
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| 172 | }
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| 173 | }
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| 174 | }
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[10039] | 175 | }
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| 176 | } |
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