1 | /* |
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2 | Copyright 2006 by Sean Luke and George Mason University |
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3 | Licensed under the Academic Free License version 3.0 |
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4 | See the file "LICENSE" for more information |
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5 | */ |
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6 | |
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7 | package ec.spatial; |
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8 | |
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9 | import ec.Initializer; |
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10 | import ec.Individual; |
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11 | import ec.BreedingPipeline; |
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12 | import ec.Breeder; |
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13 | import ec.simple.*; |
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14 | import ec.EvolutionState; |
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15 | import ec.Population; |
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16 | import ec.util.Parameter; |
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17 | import ec.util.*; |
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18 | |
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19 | /* |
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20 | * SpatialBreeder.java |
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21 | * |
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22 | * By: Liviu Panait |
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23 | */ |
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24 | |
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25 | /** |
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26 | * A slight modification of the simple breeder for spatially-embedded EAs. |
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27 | |
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28 | * Breeds each subpopulation separately, with no inter-population exchange, |
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29 | * and using a generational approach. A SpatialBreeder may have multiple |
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30 | * threads; it divvys up a subpopulation into chunks and hands one chunk |
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31 | * to each thread to populate. One array of BreedingPipelines is obtained |
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32 | * from a population's Species for each operating breeding thread. |
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33 | * |
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34 | * |
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35 | * |
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36 | * |
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37 | * @author Liviu Panait |
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38 | * @version 1.0 |
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39 | */ |
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40 | |
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41 | public class SpatialBreeder extends SimpleBreeder |
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42 | { |
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43 | public void setup(final EvolutionState state, final Parameter base) |
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44 | { |
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45 | super.setup(state, base); |
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46 | |
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47 | // check for elitism and warn about it |
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48 | for(int i = 0 ; i < elite.length; i++) |
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49 | if (elite[i] > 0) |
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50 | { |
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51 | state.output.warning("You're using elitism with SpatialBreeder. This is unwise as elitism is done by moving individuals around in the population, thus messing up the spatial nature of breeding.", |
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52 | base.push(P_ELITE).push(""+i)); |
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53 | break; |
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54 | } |
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55 | } |
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56 | |
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57 | protected void breedPopChunk(Population newpop, EvolutionState state, |
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58 | int[] numinds, int[] from, int threadnum) |
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59 | { |
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60 | for(int subpop=0;subpop<newpop.subpops.length;subpop++) |
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61 | { |
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62 | BreedingPipeline bp = (BreedingPipeline)newpop.subpops[subpop]. |
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63 | species.pipe_prototype.clone(); |
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64 | |
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65 | if (!(state.population.subpops[subpop] instanceof Space)) |
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66 | state.output.fatal("Subpopulation " + subpop + " does not implement the Space interface."); |
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67 | Space space = (Space)(state.population.subpops[subpop]); |
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68 | |
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69 | // check to make sure that the breeding pipeline produces |
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70 | // the right kind of individuals. Don't want a mistake there! :-) |
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71 | if (!bp.produces(state,newpop,subpop,threadnum)) |
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72 | state.output.fatal("The Breeding Pipeline of subpopulation " + subpop + " does not produce individuals of the expected species " + newpop.subpops[subpop].species.getClass().getName() + " or fitness " + newpop.subpops[subpop].species.f_prototype ); |
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73 | bp.prepareToProduce(state,subpop,threadnum); |
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74 | |
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75 | // start breedin'! |
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76 | for(int x = from[subpop]; x < from[subpop] + numinds[subpop]; x++) |
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77 | { |
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78 | space.setIndex(threadnum, x); |
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79 | if (bp.produce(1, 1, x, subpop, newpop.subpops[subpop].individuals, state, threadnum) != 1) |
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80 | state.output.fatal( "The pipelines should produce one individual at a time!" ); |
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81 | } |
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82 | |
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83 | bp.finishProducing(state,subpop,threadnum); |
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84 | } |
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85 | } |
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86 | |
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87 | } |
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88 | |
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89 | |
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