1 | /* |
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2 | Copyright 2006 by Sean Luke |
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3 | Licensed under the Academic Free License version 3.0 |
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4 | See the file "LICENSE" for more information |
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5 | */ |
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6 | |
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7 | |
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8 | package ec.gp.breed; |
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9 | import ec.*; |
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10 | import ec.util.*; |
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11 | import ec.gp.*; |
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12 | |
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13 | /* |
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14 | * RehangPipeline.java |
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15 | * |
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16 | * Created: Wed Dec 15 21:41:30 1999 |
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17 | * By: Sean Luke |
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18 | */ |
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19 | |
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20 | /** |
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21 | * RehangPipeline picks a nonterminal node other than the root |
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22 | * and "rehangs" it as |
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23 | * a new root. Imagine if the tree were nodes connected with string. |
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24 | * Grab the new node and pick it up, letting the other nodes hang |
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25 | * underneath it as a new "root". That's in effect what you're doing. |
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26 | * |
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27 | * <p><b>Important Note</b>: Because it must be free of any constraints |
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28 | * by nature, RehangPipeline does not work with strong typing. You must |
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29 | * not have more than one type defined in order to use RehangPipeline. |
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30 | * |
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31 | * <p>RehangPipeline picks a random tree, then picks randomly from |
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32 | * all the nonterminals in the tree other than the root, and rehangs the |
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33 | * chosen nonterminal |
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34 | * as the new root. If its chosen tree has no nonterminals, it repeats |
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35 | * the choose-tree process. If after <i>tries</i> times |
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36 | * it has failed to find a tree with nonterminals (other than the root), |
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37 | * it gives up and simply |
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38 | * copies the individual. As you might guess, determining if a tree has |
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39 | * nonterminals is very fast, so <i>tries</i> can be pretty large with |
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40 | * little to no detriment to evolution speed. |
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41 | * |
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42 | * <p>"Rehanging" is complicated to describe. First, you pick a random |
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43 | * child of your chosen nonterminal <i>n</i>, |
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44 | * and remove this subtree from the tree. |
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45 | * Call this subtree <i>T</i>. Next, you set the nonterminal as a new root; its |
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46 | * former parent <i>p</i> now fills the slot left behind by the missing subtree. |
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47 | * The <i>p</i>'s former parent <i>q</i> now fills the slot left behind by |
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48 | * <i>n</i>. <i>q</i>'s former parent <i>r</i> now fills the slot left behind |
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49 | * by <i>p</i>, and so on. This proceeds all the way up to the old root, which |
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50 | * will be left with one empty slot (where its former child was that is now its new |
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51 | * parent). This slot is then filled with <i>T</i> |
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52 | |
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53 | <p><b>Typical Number of Individuals Produced Per <tt>produce(...)</tt> call</b><br> |
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54 | ...as many as the source produces |
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55 | |
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56 | <p><b>Number of Sources</b><br> |
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57 | 1 |
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58 | |
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59 | <p><b>Parameters</b><br> |
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60 | <table> |
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61 | <tr><td valign=top><i>base</i>.<tt>tries</tt><br> |
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62 | <font size=-1>int >= 1</font></td> |
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63 | <td valign=top>(number of times to try finding valid pairs of nodes)</td></tr> |
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64 | |
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65 | <tr><td valign=top><i>base</i>.<tt>tree.0</tt><br> |
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66 | <font size=-1>0 < int < (num trees in individuals), if exists</font></td> |
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67 | <td valign=top>(tree chosen for mutation; if parameter doesn't exist, tree is picked at random)</td></tr> |
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68 | |
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69 | </table> |
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70 | |
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71 | <p><b>Default Base</b><br> |
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72 | gp.breed.rehang |
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73 | |
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74 | |
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75 | * @author Sean Luke |
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76 | * @version 1.0 |
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77 | */ |
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78 | |
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79 | public class RehangPipeline extends GPBreedingPipeline |
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80 | { |
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81 | public static final String P_REHANG = "rehang"; |
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82 | public static final String P_NUM_TRIES = "tries"; |
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83 | public static final int NUM_SOURCES = 1; |
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84 | |
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85 | /** The number of times the pipeline tries to find a tree with a |
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86 | nonterminal before giving up and just copying the individual. */ |
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87 | int numTries; |
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88 | |
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89 | /** Is our tree fixed? If not, this is -1 */ |
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90 | int tree; |
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91 | |
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92 | public Parameter defaultBase() { return GPBreedDefaults.base().push(P_REHANG); } |
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93 | |
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94 | public int numSources() { return NUM_SOURCES; } |
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95 | |
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96 | public void setup(final EvolutionState state, final Parameter base) |
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97 | { |
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98 | super.setup(state,base); |
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99 | |
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100 | Parameter def = defaultBase(); |
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101 | |
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102 | numTries = state.parameters.getInt(base.push(P_NUM_TRIES), |
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103 | def.push(P_NUM_TRIES),1); |
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104 | if (numTries == 0) |
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105 | state.output.fatal("RehangPipeline has an invalid number of tries (it must be >= 1).",base.push(P_NUM_TRIES),def.push(P_NUM_TRIES)); |
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106 | |
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107 | if (((GPInitializer)state.initializer).numAtomicTypes + ((GPInitializer)state.initializer).numSetTypes > 1) |
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108 | state.output.fatal("RehangPipeline only works when there is only one type (the system is typeless", base,def); |
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109 | |
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110 | tree = TREE_UNFIXED; |
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111 | if (state.parameters.exists(base.push(P_TREE).push(""+0), |
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112 | def.push(P_TREE).push(""+0))) |
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113 | { |
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114 | tree = state.parameters.getInt(base.push(P_TREE).push(""+0), |
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115 | def.push(P_TREE).push(""+0),0); |
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116 | if (tree==-1) |
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117 | state.output.fatal("Tree fixed value, if defined, must be >= 0"); |
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118 | } |
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119 | } |
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120 | |
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121 | |
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122 | |
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123 | private int numRehangableNodes(final GPNode root, int soFar) |
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124 | { |
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125 | // we don't include the tree root |
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126 | for(int x=0;x<root.children.length;x++) |
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127 | soFar = _numRehangableNodes(root.children[x],soFar); |
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128 | return soFar; |
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129 | } |
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130 | |
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131 | private int _numRehangableNodes(final GPNode root, int soFar) |
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132 | { |
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133 | if (root.children.length>0) soFar++; // rehangable |
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134 | for(int x=0;x<root.children.length;x++) |
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135 | soFar = _numRehangableNodes(root.children[x],soFar); |
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136 | return soFar; |
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137 | } |
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138 | |
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139 | |
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140 | private GPNode rehangableNode; |
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141 | |
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142 | private int pickRehangableNode(final GPNode root, int num) |
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143 | { |
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144 | // we don't include the tree root |
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145 | for(int x=0;x<root.children.length;x++) |
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146 | { |
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147 | num = _pickRehangableNode(root.children[x],num); |
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148 | if (num==-1) break; // someone found it |
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149 | } |
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150 | return num; |
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151 | } |
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152 | |
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153 | // sticks the node in |
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154 | private int _pickRehangableNode(final GPNode root, int num) |
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155 | { |
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156 | if (root.children.length>0) // rehangable |
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157 | { |
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158 | num--; |
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159 | if (num==-1) // found it |
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160 | { |
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161 | rehangableNode = root; |
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162 | return num; |
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163 | } |
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164 | } |
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165 | for(int x=0;x<root.children.length;x++) |
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166 | { |
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167 | num = _pickRehangableNode(root.children[x],num); |
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168 | if (num==-1) break; // someone found it |
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169 | } |
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170 | return num; |
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171 | } |
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172 | |
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173 | |
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174 | private void rehang(final EvolutionState state, final int thread, |
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175 | GPNode pivot, final GPNode root) |
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176 | { |
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177 | // pivot must not be root |
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178 | if (pivot==root) // uh oh |
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179 | throw new InternalError("Oops, pivot==root in ec.gp.breed.Rehang.rehang(...)"); |
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180 | |
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181 | // snip off a random child from the pivot |
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182 | byte spot = (byte)(state.random[thread].nextInt(pivot.children.length)); |
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183 | byte newSpot; byte tmpSpot; |
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184 | GPNode cut = pivot.children[spot]; |
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185 | |
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186 | // rehang pivot as new root and set it up |
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187 | GPNode newPivot = (GPNode)(pivot.parent); |
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188 | ((GPTree)root.parent).child = pivot; |
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189 | pivot.parent = root.parent; |
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190 | newSpot = pivot.argposition; |
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191 | pivot.argposition = 0; |
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192 | GPNode oldPivot = pivot; |
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193 | pivot = newPivot; |
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194 | |
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195 | // rehang the intermediate nodes |
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196 | while(pivot!=root) |
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197 | { |
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198 | newPivot = (GPNode)(pivot.parent); |
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199 | |
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200 | pivot.parent = oldPivot; |
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201 | oldPivot.children[spot] = pivot; |
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202 | tmpSpot = pivot.argposition; |
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203 | pivot.argposition = spot; |
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204 | spot = newSpot; |
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205 | newSpot = tmpSpot; |
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206 | |
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207 | oldPivot = pivot; |
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208 | pivot = newPivot; |
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209 | } |
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210 | |
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211 | // rehang the root and set the cut |
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212 | pivot.parent = oldPivot; |
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213 | oldPivot.children[spot] = pivot; |
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214 | pivot.argposition = spot; |
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215 | cut.parent = pivot; |
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216 | cut.argposition = newSpot; |
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217 | pivot.children[newSpot] = cut; |
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218 | } |
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219 | |
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220 | |
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221 | public int produce(final int min, |
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222 | final int max, |
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223 | final int start, |
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224 | final int subpopulation, |
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225 | final Individual[] inds, |
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226 | final EvolutionState state, |
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227 | final int thread) |
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228 | { |
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229 | // grab n individuals from our source and stick 'em right into inds. |
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230 | // we'll modify them from there |
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231 | int n= sources[0].produce(min,max,start,subpopulation,inds,state,thread); |
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232 | |
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233 | |
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234 | // should we bother? |
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235 | if (!state.random[thread].nextBoolean(likelihood)) |
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236 | return reproduce(n, start, subpopulation, inds, state, thread, false); // DON'T produce children from source -- we already did |
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237 | |
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238 | |
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239 | |
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240 | // now let's rehang 'em |
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241 | for(int q=start; q < n+start; q++) |
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242 | { |
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243 | GPIndividual i = (GPIndividual)inds[q]; |
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244 | |
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245 | if (tree!=TREE_UNFIXED && (tree<0 || tree >= i.trees.length)) |
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246 | // uh oh |
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247 | state.output.fatal("RehangPipeline attempted to fix tree.0 to a value which was out of bounds of the array of the individual's trees. Check the pipeline's fixed tree values -- they may be negative or greater than the number of trees in an individual"); |
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248 | |
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249 | GPIndividual j; |
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250 | if (sources[0] instanceof BreedingPipeline) |
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251 | // it's already a copy, so just smash the tree in |
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252 | { |
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253 | j=i; |
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254 | } |
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255 | else // need to copy it |
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256 | { |
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257 | j = (GPIndividual)(i.lightClone()); |
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258 | |
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259 | // Fill in various tree information that didn't get filled in there |
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260 | j.trees = new GPTree[i.trees.length]; |
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261 | |
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262 | for(int x=0;x<j.trees.length;x++) |
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263 | { |
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264 | j.trees[x] = (GPTree)(i.trees[x].lightClone()); |
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265 | j.trees[x].owner = j; |
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266 | j.trees[x].child = (GPNode)(i.trees[x].child.clone()); |
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267 | j.trees[x].child.parent = j.trees[x]; |
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268 | j.trees[x].child.argposition = 0; |
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269 | } |
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270 | } |
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271 | |
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272 | |
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273 | for (int x=0;x<numTries;x++) |
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274 | { |
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275 | int t; |
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276 | // pick random tree |
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277 | if (tree==TREE_UNFIXED) |
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278 | if (i.trees.length>1) t = state.random[thread].nextInt(i.trees.length); |
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279 | else t = 0; |
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280 | else t = tree; |
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281 | |
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282 | // is the tree rehangable? |
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283 | if (j.trees[t].child.children.length==0) continue; // uh oh, try again |
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284 | boolean rehangable = false; |
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285 | for(int y=0;y<j.trees[t].child.children.length;y++) |
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286 | if (j.trees[t].child.children[y].children.length>0) // nonterminal |
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287 | { rehangable = true; break; } |
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288 | if (!rehangable) continue; // the root's children are all terminals |
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289 | |
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290 | int numrehang = numRehangableNodes(j.trees[t].child,0); |
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291 | pickRehangableNode(j.trees[t].child, |
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292 | state.random[thread].nextInt(numrehang)); |
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293 | |
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294 | rehang(state,thread,rehangableNode,j.trees[t].child); |
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295 | |
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296 | j.evaluated = false; |
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297 | } |
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298 | |
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299 | // add the new individual, replacing its previous source |
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300 | inds[q] = j; |
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301 | } |
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302 | return n; |
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303 | } |
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304 | } |
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