1 | /* |
---|
2 | Copyright 2006 by Sean Luke |
---|
3 | Licensed under the Academic Free License version 3.0 |
---|
4 | See the file "LICENSE" for more information |
---|
5 | */ |
---|
6 | |
---|
7 | |
---|
8 | package ec.gp.breed; |
---|
9 | import ec.*; |
---|
10 | import ec.util.*; |
---|
11 | import ec.gp.*; |
---|
12 | |
---|
13 | /* |
---|
14 | * MutatePromotePipeline.java |
---|
15 | * |
---|
16 | * Created: Wed Dec 15 21:41:30 1999 |
---|
17 | * By: Sean Luke |
---|
18 | */ |
---|
19 | |
---|
20 | /** |
---|
21 | * MutatePromotePipeline works very similarly to the PromoteNode algorithm |
---|
22 | * described in Kumar Chellapilla, |
---|
23 | * "A Preliminary Investigation into Evolving Modular Programs without Subtree |
---|
24 | * Crossover", GP98, and is also similar to the "deletion" operator found in |
---|
25 | * Una-May O'Reilly's thesis, |
---|
26 | * <a href="http://www.ai.mit.edu/people/unamay/thesis.html"> |
---|
27 | * "An Analysis of Genetic Programming"</a>. |
---|
28 | * |
---|
29 | * <p>MutatePromotePipeline tries <i>tries</i> times to find a tree |
---|
30 | * that has at least one promotable node. It then picks randomly from |
---|
31 | * all the promotable nodes in the tree, and promotes one. If it cannot |
---|
32 | * find a valid tree in <i>tries</i> times, it gives up and simply |
---|
33 | * copies the individual. |
---|
34 | * |
---|
35 | * <p>"Promotion" means to take a node <i>n</i> whose parent is <i>m</i>, |
---|
36 | * and replacing the subtree rooted at <i>m</i> with the subtree rooted at <i>n</i>. |
---|
37 | * |
---|
38 | * <p>A "Promotable" node means a node which is capable of promotion |
---|
39 | * given the existing type constraints. In general to promote a node <i>foo</i>, |
---|
40 | * <i>foo</i> must have a parent node, and must be type-compatible with the |
---|
41 | * child slot that its parent fills. |
---|
42 | * |
---|
43 | |
---|
44 | <p><b>Typical Number of Individuals Produced Per <tt>produce(...)</tt> call</b><br> |
---|
45 | ...as many as the source produces |
---|
46 | |
---|
47 | <p><b>Number of Sources</b><br> |
---|
48 | 1 |
---|
49 | |
---|
50 | <p><b>Parameters</b><br> |
---|
51 | <table> |
---|
52 | <tr><td valign=top><i>base</i>.<tt>tries</tt><br> |
---|
53 | <font size=-1>int >= 1</font></td> |
---|
54 | <td valign=top>(number of times to try finding valid pairs of nodes)</td></tr> |
---|
55 | |
---|
56 | <tr><td valign=top><i>base</i>.<tt>tree.0</tt><br> |
---|
57 | <font size=-1>0 < int < (num trees in individuals), if exists</font></td> |
---|
58 | <td valign=top>(tree chosen for mutation; if parameter doesn't exist, tree is picked at random)</td></tr> |
---|
59 | |
---|
60 | </table> |
---|
61 | |
---|
62 | <p><b>Default Base</b><br> |
---|
63 | gp.breed.mutate-promote |
---|
64 | |
---|
65 | |
---|
66 | * @author Sean Luke |
---|
67 | * @version 1.0 |
---|
68 | */ |
---|
69 | |
---|
70 | public class MutatePromotePipeline extends GPBreedingPipeline |
---|
71 | { |
---|
72 | public static final String P_MUTATEPROMOTE = "mutate-promote"; |
---|
73 | public static final String P_NUM_TRIES = "tries"; |
---|
74 | public static final int NUM_SOURCES = 1; |
---|
75 | |
---|
76 | /** Is our tree fixed? If not, this is -1 */ |
---|
77 | int tree; |
---|
78 | |
---|
79 | /** The number of times the pipeline tries to build a valid mutated |
---|
80 | tree before it gives up and just passes on the original */ |
---|
81 | int numTries; |
---|
82 | |
---|
83 | |
---|
84 | public Parameter defaultBase() { return GPBreedDefaults.base().push(P_MUTATEPROMOTE); } |
---|
85 | |
---|
86 | public int numSources() { return NUM_SOURCES; } |
---|
87 | |
---|
88 | public void setup(final EvolutionState state, final Parameter base) |
---|
89 | { |
---|
90 | super.setup(state,base); |
---|
91 | |
---|
92 | Parameter def = defaultBase(); |
---|
93 | |
---|
94 | numTries = state.parameters.getInt(base.push(P_NUM_TRIES), |
---|
95 | def.push(P_NUM_TRIES),1); |
---|
96 | if (numTries == 0) |
---|
97 | state.output.fatal("MutatePromotePipeline has an invalid number of tries (it must be >= 1).",base.push(P_NUM_TRIES),def.push(P_NUM_TRIES)); |
---|
98 | |
---|
99 | tree = TREE_UNFIXED; |
---|
100 | if (state.parameters.exists(base.push(P_TREE).push(""+0), |
---|
101 | def.push(P_TREE).push(""+0))) |
---|
102 | { |
---|
103 | tree = state.parameters.getInt(base.push(P_TREE).push(""+0), |
---|
104 | def.push(P_TREE).push(""+0),0); |
---|
105 | if (tree==-1) |
---|
106 | state.output.fatal("Tree fixed value, if defined, must be >= 0"); |
---|
107 | } |
---|
108 | } |
---|
109 | |
---|
110 | private boolean promotable(final GPInitializer initializer, |
---|
111 | final GPNode node) |
---|
112 | { |
---|
113 | // A node is promotable if: |
---|
114 | // 1: its parent is a GPNode |
---|
115 | if (!(node.parent instanceof GPNode)) |
---|
116 | return false; |
---|
117 | GPNode parent = (GPNode)(node.parent); |
---|
118 | |
---|
119 | GPType t; |
---|
120 | if (parent.parent instanceof GPNode) // ugh, expensive |
---|
121 | t = ((GPNode)(parent.parent)).constraints(initializer).childtypes[parent.argposition]; |
---|
122 | else |
---|
123 | t = ((GPTree)(parent.parent)).constraints(initializer).treetype; |
---|
124 | |
---|
125 | // 2: the node's returntype is type-compatible with its GRANDparent's return slot |
---|
126 | return (node.constraints(initializer).returntype.compatibleWith(initializer,t)); |
---|
127 | } |
---|
128 | |
---|
129 | |
---|
130 | private void promoteSomething(final GPNode node) |
---|
131 | { |
---|
132 | // the node's parent MUST be a GPNode -- we've checked that already |
---|
133 | GPNode parent = (GPNode)(node.parent); |
---|
134 | |
---|
135 | node.parent = parent.parent; |
---|
136 | node.argposition = parent.argposition; |
---|
137 | |
---|
138 | if (parent.parent instanceof GPNode) |
---|
139 | ((GPNode)(parent.parent)).children[parent.argposition] = node; |
---|
140 | else ((GPTree)(parent.parent)).child = node; |
---|
141 | return; |
---|
142 | } |
---|
143 | |
---|
144 | private int numPromotableNodes(final GPInitializer initializer, |
---|
145 | final GPNode root, int soFar) |
---|
146 | { |
---|
147 | if (promotable(initializer,root)) soFar++; |
---|
148 | for(int x=0;x<root.children.length;x++) |
---|
149 | soFar = numPromotableNodes(initializer,root.children[x],soFar); |
---|
150 | return soFar; |
---|
151 | } |
---|
152 | |
---|
153 | |
---|
154 | private GPNode promotableNode; |
---|
155 | |
---|
156 | // sticks the node in |
---|
157 | private int pickPromotableNode(final GPInitializer initializer, |
---|
158 | final GPNode root, int num) |
---|
159 | { |
---|
160 | if (promotable(initializer,root)) |
---|
161 | { |
---|
162 | num--; |
---|
163 | if (num==-1) // found it |
---|
164 | { |
---|
165 | promotableNode = root; |
---|
166 | return num; |
---|
167 | } |
---|
168 | } |
---|
169 | for(int x=0;x<root.children.length;x++) |
---|
170 | { |
---|
171 | num = pickPromotableNode(initializer,root.children[x],num); |
---|
172 | if (num==-1) break; // someone found it |
---|
173 | } |
---|
174 | return num; |
---|
175 | } |
---|
176 | |
---|
177 | |
---|
178 | public int produce(final int min, |
---|
179 | final int max, |
---|
180 | final int start, |
---|
181 | final int subpopulation, |
---|
182 | final Individual[] inds, |
---|
183 | final EvolutionState state, |
---|
184 | final int thread) |
---|
185 | { |
---|
186 | // grab n individuals from our source and stick 'em right into inds. |
---|
187 | // we'll modify them from there |
---|
188 | int n = sources[0].produce(min,max,start,subpopulation,inds,state,thread); |
---|
189 | |
---|
190 | |
---|
191 | // should we bother? |
---|
192 | if (!state.random[thread].nextBoolean(likelihood)) |
---|
193 | return reproduce(n, start, subpopulation, inds, state, thread, false); // DON'T produce children from source -- we already did |
---|
194 | |
---|
195 | |
---|
196 | |
---|
197 | GPInitializer initializer = ((GPInitializer)state.initializer); |
---|
198 | |
---|
199 | // now let's mutate 'em |
---|
200 | for(int q=start; q < n+start; q++) |
---|
201 | { |
---|
202 | GPIndividual i = (GPIndividual)inds[q]; |
---|
203 | |
---|
204 | if (tree!=TREE_UNFIXED && (tree<0 || tree >= i.trees.length)) |
---|
205 | // uh oh |
---|
206 | state.output.fatal("MutatePromotePipeline attempted to fix tree.0 to a value which was out of bounds of the array of the individual's trees. Check the pipeline's fixed tree values -- they may be negative or greater than the number of trees in an individual"); |
---|
207 | |
---|
208 | GPIndividual j; |
---|
209 | if (sources[0] instanceof BreedingPipeline) |
---|
210 | // it's already a copy, so just smash the tree in |
---|
211 | { |
---|
212 | j=i; |
---|
213 | } |
---|
214 | else // need to copy it |
---|
215 | { |
---|
216 | j = (GPIndividual)(i.lightClone()); |
---|
217 | |
---|
218 | // Fill in various tree information that didn't get filled in there |
---|
219 | j.trees = new GPTree[i.trees.length]; |
---|
220 | |
---|
221 | for(int x=0;x<j.trees.length;x++) |
---|
222 | { |
---|
223 | j.trees[x] = (GPTree)(i.trees[x].lightClone()); |
---|
224 | j.trees[x].owner = j; |
---|
225 | j.trees[x].child = (GPNode)(i.trees[x].child.clone()); |
---|
226 | j.trees[x].child.parent = j.trees[x]; |
---|
227 | j.trees[x].child.argposition = 0; |
---|
228 | } |
---|
229 | } |
---|
230 | |
---|
231 | for (int x=0;x<numTries;x++) |
---|
232 | { |
---|
233 | int t; |
---|
234 | // pick random tree |
---|
235 | if (tree==TREE_UNFIXED) |
---|
236 | if (i.trees.length>1) t = state.random[thread].nextInt(i.trees.length); |
---|
237 | else t = 0; |
---|
238 | else t = tree; |
---|
239 | |
---|
240 | // is the tree promotable? |
---|
241 | int numpromote = numPromotableNodes(initializer, j.trees[t].child,0); |
---|
242 | if (numpromote==0) continue; // uh oh, try again |
---|
243 | |
---|
244 | // promote the node, or if we're unsuccessful, just leave it alone |
---|
245 | pickPromotableNode(initializer, j.trees[t].child,state.random[thread]. |
---|
246 | nextInt(numpromote)); |
---|
247 | |
---|
248 | // promote it |
---|
249 | promoteSomething(promotableNode ); |
---|
250 | j.evaluated = false; |
---|
251 | break; |
---|
252 | } |
---|
253 | |
---|
254 | |
---|
255 | // add the new individual, replacing its previous source |
---|
256 | inds[q] = j; |
---|
257 | } |
---|
258 | return n; |
---|
259 | } |
---|
260 | } |
---|