1 | /* |
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2 | Copyright 2006 by Sean Luke |
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3 | Licensed under the Academic Free License version 3.0 |
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4 | See the file "LICENSE" for more information |
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5 | */ |
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6 | |
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7 | |
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8 | package ec.gp.breed; |
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9 | import ec.*; |
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10 | import ec.util.*; |
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11 | import ec.gp.*; |
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12 | |
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13 | /* |
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14 | * MutateDemotePipeline.java |
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15 | * |
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16 | * Created: Wed Dec 15 21:41:30 1999 |
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17 | * By: Sean Luke |
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18 | */ |
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19 | |
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20 | /** |
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21 | * MutateDemotePipeline works very similarly to the DemoteNode algorithm |
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22 | * described in Kumar Chellapilla, |
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23 | * "A Preliminary Investigation into Evolving Modular Programs without Subtree |
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24 | * Crossover", GP98, and is also similar to the "insertion" operator found in |
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25 | * Una-May O'Reilly's thesis, |
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26 | * <a href="http://www.ai.mit.edu/people/unamay/thesis.html"> |
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27 | * "An Analysis of Genetic Programming"</a>. |
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28 | * |
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29 | * <p>MutateDemotePipeline tries picks a random tree, then picks |
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30 | * randomly from all the demotable nodes in the tree, and demotes one. |
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31 | * If its chosen tree has no demotable nodes, or demoting |
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32 | * its chosen demotable node would make the tree too deep, it repeats |
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33 | * the choose-tree-then-choose-node process. If after <i>tries</i> times |
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34 | * it has failed to find a valid tree and demotable node, it gives up and simply |
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35 | * copies the individual. |
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36 | * |
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37 | * <p>"Demotion" means to take a node <i>n</i> and insert a new node <i>m</i> |
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38 | * between <i>n</i> and <i>n</i>'s parent. <i>n</i> becomes a child of |
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39 | * <i>m</i>; the place where it becomes a child is determined at random |
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40 | * from all the type-compatible slots of <i>m</i>. The other child slots |
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41 | * of <i>m</i> are filled with randomly-generated terminals. |
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42 | * Chellapilla's version of the algorithm always |
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43 | * places <i>n</i> in child slot 0 of <i>m</i>. Because this would be |
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44 | * unneccessarily restrictive on strong typing, MutateDemotePipeline instead |
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45 | * picks the slot at random from all available valid choices. |
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46 | * |
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47 | * <p>A "Demotable" node means a node which is capable of demotion |
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48 | * given the existing function set. In general to demote a node <i>foo</i>, |
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49 | * there must exist in the function set a nonterminal whose return type |
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50 | * is type-compatible with the child slot <i>foo</i> holds in its parent; |
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51 | * this nonterminal must also have a child slot which is type-compatible |
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52 | * with <i>foo</i>'s return type. |
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53 | * |
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54 | * <p>This method is very expensive in searching nodes for |
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55 | * "demotability". However, if the number of types is 1 (the |
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56 | * GP run is typeless) then the type-constraint-checking |
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57 | * code is bypassed and the method runs a little faster. |
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58 | * |
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59 | |
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60 | <p><b>Typical Number of Individuals Produced Per <tt>produce(...)</tt> call</b><br> |
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61 | ...as many as the source produces |
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62 | |
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63 | <p><b>Number of Sources</b><br> |
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64 | 1 |
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65 | |
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66 | <p><b>Parameters</b><br> |
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67 | <table> |
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68 | <tr><td valign=top><i>base</i>.<tt>tries</tt><br> |
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69 | <font size=-1>int >= 1</font></td> |
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70 | <td valign=top>(number of times to try finding valid pairs of nodes)</td></tr> |
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71 | |
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72 | <tr><td valign=top><i>base</i>.<tt>maxdepth</tt><br> |
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73 | <font size=-1>int >= 1</font></td> |
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74 | <td valign=top>(maximum valid depth of a mutated tree)</td></tr> |
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75 | |
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76 | <tr><td valign=top><i>base</i>.<tt>tree.0</tt><br> |
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77 | <font size=-1>0 < int < (num trees in individuals), if exists</font></td> |
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78 | <td valign=top>(tree chosen for mutation; if parameter doesn't exist, tree is picked at random)</td></tr> |
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79 | |
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80 | </table> |
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81 | |
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82 | <p><b>Default Base</b><br> |
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83 | gp.breed.mutate-demote |
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84 | |
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85 | |
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86 | * @author Sean Luke |
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87 | * @version 1.0 |
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88 | */ |
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89 | |
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90 | public class MutateDemotePipeline extends GPBreedingPipeline |
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91 | { |
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92 | public static final String P_MUTATEDEMOTE = "mutate-demote"; |
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93 | public static final String P_NUM_TRIES = "tries"; |
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94 | public static final String P_MAXDEPTH = "maxdepth"; |
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95 | public static final int NUM_SOURCES = 1; |
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96 | |
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97 | /** The number of times the pipeline tries to build a valid mutated |
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98 | tree before it gives up and just passes on the original */ |
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99 | int numTries; |
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100 | |
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101 | /** The maximum depth of a mutated tree */ |
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102 | int maxDepth; |
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103 | |
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104 | /** Is our tree fixed? If not, this is -1 */ |
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105 | int tree; |
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106 | |
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107 | /** Temporary Node Gatherer */ |
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108 | private GPNodeGatherer gatherer; |
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109 | |
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110 | public MutateDemotePipeline() { gatherer = new GPNodeGatherer(); } |
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111 | |
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112 | public Parameter defaultBase() { return GPBreedDefaults.base().push(P_MUTATEDEMOTE); } |
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113 | |
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114 | public int numSources() { return NUM_SOURCES; } |
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115 | |
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116 | public void setup(final EvolutionState state, final Parameter base) |
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117 | { |
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118 | super.setup(state,base); |
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119 | |
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120 | Parameter def = defaultBase(); |
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121 | |
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122 | numTries = state.parameters.getInt(base.push(P_NUM_TRIES), |
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123 | def.push(P_NUM_TRIES),1); |
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124 | if (numTries == 0) |
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125 | state.output.fatal("MutateDemotePipeline has an invalid number of tries (it must be >= 1).",base.push(P_NUM_TRIES),def.push(P_NUM_TRIES)); |
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126 | |
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127 | maxDepth = state.parameters.getInt(base.push(P_MAXDEPTH), |
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128 | def.push(P_MAXDEPTH),1); |
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129 | if (maxDepth==0) |
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130 | state.output.fatal("The MutateDemotePipeline " + base + "has an invalid maximum depth (it must be >= 1).",base.push(P_MAXDEPTH),def.push(P_MAXDEPTH)); |
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131 | |
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132 | tree = TREE_UNFIXED; |
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133 | if (state.parameters.exists(base.push(P_TREE).push(""+0), |
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134 | def.push(P_TREE).push(""+0))) |
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135 | { |
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136 | tree = state.parameters.getInt(base.push(P_TREE).push(""+0), |
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137 | def.push(P_TREE).push(""+0),0); |
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138 | if (tree==-1) |
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139 | state.output.fatal("Tree fixed value, if defined, must be >= 0"); |
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140 | } |
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141 | } |
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142 | |
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143 | public Object clone() |
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144 | { |
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145 | MutateDemotePipeline obj = (MutateDemotePipeline)(super.clone()); |
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146 | obj.gatherer = new GPNodeGatherer(); // make sure they're different |
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147 | return obj; |
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148 | } |
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149 | |
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150 | |
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151 | private boolean demotable(final GPInitializer initializer, |
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152 | final GPNode node, final GPFunctionSet set) |
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153 | { |
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154 | GPType t; |
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155 | |
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156 | if (node.parent instanceof GPNode) // ugh, expensive |
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157 | t = ((GPNode)(node.parent)).constraints(initializer).childtypes[node.argposition]; |
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158 | else |
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159 | t = ((GPTree)(node.parent)).constraints(initializer).treetype; |
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160 | |
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161 | // Now, out of the nonterminals compatible with that return type, |
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162 | // do any also have a child compatible with that return type? This |
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163 | // will be VERY expensive |
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164 | |
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165 | for(int x=0;x<set.nonterminals[t.type].length;x++) |
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166 | for(int y=0;y<set.nonterminals[t.type][x].constraints(initializer). |
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167 | childtypes.length;y++) |
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168 | if (set.nonterminals[t.type][x].constraints(initializer).childtypes[y]. |
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169 | compatibleWith(initializer,node.constraints(initializer).returntype)) |
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170 | return true; |
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171 | return false; |
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172 | } |
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173 | |
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174 | |
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175 | private void demoteSomething(final GPNode node, final EvolutionState state, final int thread, final GPFunctionSet set) |
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176 | { |
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177 | // if I have just one type, do it the easy way |
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178 | if (((GPInitializer)state.initializer).numAtomicTypes + |
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179 | ((GPInitializer)state.initializer).numSetTypes == 1) |
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180 | _demoteSomethingTypeless(node,state,thread,set); |
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181 | // otherwise, I gotta do the dirty work |
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182 | else _demoteSomething(node,state,thread,set); |
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183 | } |
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184 | |
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185 | |
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186 | private void _demoteSomething(final GPNode node, final EvolutionState state, final int thread, final GPFunctionSet set) |
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187 | { |
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188 | int numDemotable = 0; |
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189 | |
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190 | GPType t; |
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191 | GPInitializer initializer = ((GPInitializer)state.initializer); |
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192 | |
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193 | if (node.parent instanceof GPNode) // ugh, expensive |
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194 | t = ((GPNode)(node.parent)).constraints(initializer).childtypes[node.argposition]; |
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195 | else |
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196 | t = ((GPTree)(node.parent)).constraints(initializer).treetype; |
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197 | |
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198 | // Now, determine how many nodes we can demote this under -- |
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199 | // note this doesn't select based on the total population |
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200 | // of "available child positions", but on the total population |
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201 | // of *nodes* regardless of if they have more than one possible |
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202 | // valid "child position". |
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203 | |
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204 | for(int x=0;x<set.nonterminals[t.type].length;x++) |
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205 | for(int y=0;y<set.nonterminals[t.type][x].constraints(initializer). |
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206 | childtypes.length;y++) |
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207 | if (set.nonterminals[t.type][x].constraints(initializer).childtypes[y]. |
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208 | compatibleWith(initializer,node.constraints(initializer).returntype)) |
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209 | { |
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210 | numDemotable++; break; // breaks out to enclosing for |
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211 | } |
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212 | |
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213 | // pick a random item to demote -- numDemotable is assumed to be > 0 |
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214 | int demoteItem = state.random[thread].nextInt(numDemotable); |
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215 | |
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216 | numDemotable=0; |
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217 | // find it |
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218 | |
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219 | for(int x=0;x<set.nonterminals[t.type].length;x++) |
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220 | for(int y=0;y<set.nonterminals[t.type][x].constraints(initializer). |
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221 | childtypes.length;y++) |
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222 | if (set.nonterminals[t.type][x].constraints(initializer).childtypes[y]. |
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223 | compatibleWith(initializer,node.constraints(initializer).returntype)) |
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224 | { |
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225 | if (numDemotable==demoteItem) |
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226 | { |
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227 | // clone the node |
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228 | GPNode cnode = (GPNode)(set.nonterminals[t.type][x].lightClone()); |
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229 | |
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230 | // choose a spot to hang the old parent under |
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231 | int numSpots=0; |
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232 | GPType retyp = node.constraints(initializer).returntype; |
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233 | GPType[] chityp = cnode.constraints(initializer).childtypes; |
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234 | |
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235 | for(int z=0;z<cnode.children.length;z++) |
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236 | if (chityp[z].compatibleWith(initializer,retyp)) |
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237 | numSpots++; |
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238 | int choice = state.random[thread].nextInt(numSpots); |
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239 | |
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240 | numSpots=0; |
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241 | for(int z=0;z<cnode.children.length;z++) |
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242 | if (chityp[z].compatibleWith(initializer,retyp)) |
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243 | { |
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244 | if (numSpots==choice) |
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245 | { |
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246 | // demote the parent, inserting cnode |
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247 | cnode.parent = node.parent; |
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248 | cnode.argposition = node.argposition; |
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249 | cnode.children[z] = node; |
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250 | node.parent = cnode; |
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251 | node.argposition = (byte)z; |
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252 | if (cnode.parent instanceof GPNode) |
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253 | ((GPNode)(cnode.parent)). |
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254 | children[cnode.argposition] = cnode; |
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255 | else ((GPTree)(cnode.parent)).child = cnode; |
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256 | |
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257 | // this is important to ensure that the |
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258 | // demotion only happens once! Otherwise |
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259 | // you'll get really nasty bugs |
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260 | numSpots++; // notice no break |
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261 | } |
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262 | else |
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263 | { |
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264 | // hang a randomly-generated terminal off of cnode |
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265 | GPNode term = (GPNode)(set.terminals[chityp[z].type][ |
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266 | state.random[thread].nextInt( |
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267 | set.terminals[chityp[z].type].length)].lightClone()); |
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268 | cnode.children[z] = term; |
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269 | term.parent = cnode; // just in case |
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270 | term.argposition = (byte)z; // just in case |
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271 | term.resetNode(state,thread); // let it randomize itself if necessary |
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272 | |
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273 | // increase numSpots |
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274 | numSpots++; // notice no break |
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275 | } |
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276 | } |
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277 | else |
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278 | { |
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279 | // hang a randomly-generated terminal off of cnode |
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280 | GPNode term = (GPNode)(set.terminals[chityp[z].type][ |
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281 | state.random[thread].nextInt( |
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282 | set.terminals[chityp[z].type].length)].lightClone()); |
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283 | cnode.children[z] = term; |
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284 | term.parent = cnode; // just in case |
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285 | term.argposition = (byte)z; // just in case |
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286 | term.resetNode(state,thread); // let it randomize itself if necessary |
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287 | } |
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288 | return; |
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289 | } |
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290 | else |
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291 | { |
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292 | numDemotable++; break; // breaks out to enclosing for |
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293 | } |
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294 | } |
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295 | // should never reach here |
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296 | throw new InternalError("Bug in demoteSomething -- should never be able to reach the end of the function"); |
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297 | } |
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298 | |
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299 | |
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300 | |
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301 | private void _demoteSomethingTypeless(final GPNode node, final EvolutionState state, final int thread, final GPFunctionSet set) |
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302 | { |
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303 | int numDemotable = 0; |
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304 | |
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305 | // since we're typeless, we can demote under any nonterminal |
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306 | numDemotable = set.nonterminals[0].length; |
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307 | |
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308 | // pick a random item to demote -- numDemotable is assumed to be > 0 |
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309 | int demoteItem = state.random[thread].nextInt(numDemotable); |
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310 | |
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311 | numDemotable=0; |
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312 | // find it |
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313 | |
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314 | // clone the node |
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315 | GPNode cnode = (GPNode)(set.nonterminals[0][demoteItem].lightClone()); |
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316 | |
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317 | GPType[] chityp = cnode.constraints(((GPInitializer)state.initializer)).childtypes; |
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318 | |
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319 | // choose a spot to hang the old parent under |
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320 | int choice = state.random[thread].nextInt(cnode.children.length); |
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321 | |
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322 | for(int z=0;z<cnode.children.length;z++) |
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323 | if (z==choice) |
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324 | { |
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325 | // demote the parent, inserting cnode |
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326 | cnode.parent = node.parent; |
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327 | cnode.argposition = node.argposition; |
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328 | cnode.children[z] = node; |
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329 | node.parent = cnode; |
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330 | node.argposition = (byte)z; |
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331 | if (cnode.parent instanceof GPNode) |
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332 | ((GPNode)(cnode.parent)). |
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333 | children[cnode.argposition] = cnode; |
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334 | else ((GPTree)(cnode.parent)).child = cnode; |
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335 | } |
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336 | else |
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337 | { |
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338 | // hang a randomly-generated terminal off of cnode |
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339 | GPNode term = (GPNode)( |
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340 | set.terminals[chityp[z].type][ |
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341 | state.random[thread].nextInt( |
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342 | set.terminals[chityp[z].type].length)].lightClone()); |
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343 | cnode.children[z] = term; |
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344 | term.parent = cnode; // just in case |
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345 | term.argposition = (byte)z; // just in case |
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346 | term.resetNode(state,thread); // let it randomize itself if necessary |
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347 | } |
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348 | } |
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349 | |
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350 | |
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351 | |
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352 | |
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353 | private int numDemotableNodes(final GPInitializer initializer, |
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354 | final GPNode root, int soFar, final GPFunctionSet set) |
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355 | { |
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356 | // if I have just one type, skip this and just return |
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357 | // the number of nonterminals in the tree |
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358 | if (initializer.numAtomicTypes + |
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359 | initializer.numSetTypes == 1) |
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360 | return root.numNodes(GPNode.NODESEARCH_ALL); |
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361 | // otherwise, I gotta do the dirty work |
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362 | else return _numDemotableNodes(initializer,root,soFar,set); |
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363 | } |
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364 | |
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365 | |
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366 | private int _numDemotableNodes(final GPInitializer initializer, |
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367 | final GPNode root, int soFar, final GPFunctionSet set) |
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368 | { |
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369 | if (demotable(initializer,root, set)) soFar++; |
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370 | for(int x=0;x<root.children.length;x++) |
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371 | soFar = _numDemotableNodes(initializer,root.children[x],soFar, set); |
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372 | return soFar; |
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373 | } |
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374 | |
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375 | |
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376 | private GPNode demotableNode; |
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377 | |
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378 | |
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379 | private int pickDemotableNode(final GPInitializer initializer, |
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380 | final GPNode root, int num, final GPFunctionSet set) |
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381 | { |
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382 | // if I have just one type, skip this and just |
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383 | // the num-th nonterminal |
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384 | if (initializer.numAtomicTypes + |
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385 | initializer.numSetTypes == 1) |
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386 | { |
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387 | gatherer.node = null; |
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388 | root.nodeInPosition(num,gatherer,GPNode.NODESEARCH_ALL); |
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389 | if (gatherer.node==null) // uh oh |
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390 | throw new InternalError("Internal error in pickDemotableNode, nodeInPosition didn't find a node!"); // should never happen |
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391 | demotableNode = gatherer.node; |
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392 | return -1; // what _pickDemotableNode() returns... |
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393 | } |
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394 | // otherwise, I gotta do the dirty work |
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395 | else return _pickDemotableNode(initializer,root,num,set); |
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396 | } |
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397 | |
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398 | |
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399 | // sticks the node in |
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400 | private int _pickDemotableNode(final GPInitializer initializer, |
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401 | final GPNode root, int num, final GPFunctionSet set) |
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402 | { |
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403 | if (demotable(initializer,root, set)) |
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404 | { |
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405 | num--; |
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406 | if (num==-1) // found it |
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407 | { |
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408 | demotableNode = root; |
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409 | return num; |
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410 | } |
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411 | } |
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412 | for(int x=0;x<root.children.length;x++) |
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413 | { |
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414 | num = _pickDemotableNode(initializer, root.children[x],num,set); |
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415 | if (num==-1) break; // someone found it |
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416 | } |
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417 | return num; |
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418 | } |
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419 | |
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420 | |
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421 | /** Returns true if inner1's depth + atdepth +1 is within the depth bounds */ |
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422 | |
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423 | private boolean verifyPoint(GPNode inner1) |
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424 | { |
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425 | // We know they're swap-compatible since we generated inner1 |
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426 | // to be exactly that. So don't bother. |
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427 | |
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428 | // next check to see if inner1 can be demoted |
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429 | if (inner1.depth()+inner1.atDepth()+1 > maxDepth) return false; |
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430 | |
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431 | // checks done! |
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432 | return true; |
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433 | } |
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434 | |
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435 | |
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436 | |
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437 | public int produce(final int min, |
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438 | final int max, |
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439 | final int start, |
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440 | final int subpopulation, |
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441 | final Individual[] inds, |
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442 | final EvolutionState state, |
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443 | final int thread) |
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444 | { |
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445 | // grab n individuals from our source and stick 'em right into inds. |
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446 | // we'll modify them from there |
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447 | int n = sources[0].produce(min,max,start,subpopulation,inds,state,thread); |
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448 | |
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449 | // should we bother? |
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450 | if (!state.random[thread].nextBoolean(likelihood)) |
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451 | return reproduce(n, start, subpopulation, inds, state, thread, false); // DON'T produce children from source -- we already did |
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452 | |
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453 | |
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454 | GPInitializer initializer = ((GPInitializer)state.initializer); |
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455 | |
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456 | // now let's mutate 'em |
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457 | for(int q=start; q < n+start; q++) |
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458 | { |
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459 | GPIndividual i = (GPIndividual)inds[q]; |
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460 | |
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461 | if (tree!=TREE_UNFIXED && (tree<0 || tree >= i.trees.length)) |
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462 | // uh oh |
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463 | state.output.fatal("MutateDemotePipeline attempted to fix tree.0 to a value which was out of bounds of the array of the individual's trees. Check the pipeline's fixed tree values -- they may be negative or greater than the number of trees in an individual"); |
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464 | |
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465 | GPIndividual j; |
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466 | if (sources[0] instanceof BreedingPipeline) |
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467 | // it's already a copy, so just smash the tree in |
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468 | { |
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469 | j=i; |
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470 | } |
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471 | else // need to copy it |
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472 | { |
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473 | j = (GPIndividual)(i.lightClone()); |
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474 | |
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475 | // Fill in various tree information that didn't get filled in there |
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476 | j.trees = new GPTree[i.trees.length]; |
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477 | |
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478 | for(int x=0;x<j.trees.length;x++) |
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479 | { |
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480 | j.trees[x] = (GPTree)(i.trees[x].lightClone()); |
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481 | j.trees[x].owner = j; |
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482 | j.trees[x].child = (GPNode)(i.trees[x].child.clone()); |
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483 | j.trees[x].child.parent = j.trees[x]; |
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484 | j.trees[x].child.argposition = 0; |
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485 | } |
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486 | } |
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487 | |
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488 | for (int x=0;x<numTries;x++) |
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489 | { |
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490 | int t; |
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491 | // pick random tree |
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492 | if (tree==TREE_UNFIXED) |
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493 | if (i.trees.length>1) t = state.random[thread].nextInt(i.trees.length); |
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494 | else t = 0; |
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495 | else t = tree; |
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496 | |
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497 | // is the tree demotable? |
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498 | int numdemote = numDemotableNodes(initializer, j.trees[t].child,0,j.trees[t].constraints(initializer).functionset); |
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499 | if (numdemote==0) continue; // uh oh, try again |
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500 | |
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501 | // demote the node, or if we're unsuccessful, just leave it alone |
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502 | pickDemotableNode(initializer, j.trees[t].child,state.random[thread].nextInt(numdemote),j.trees[t].constraints(initializer).functionset); |
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503 | |
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504 | // does this node exceed the maximum depth limits? |
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505 | if (!verifyPoint(demotableNode)) continue; // uh oh, try again |
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506 | |
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507 | // demote it |
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508 | demoteSomething(demotableNode,state,thread,j.trees[t].constraints(initializer).functionset); |
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509 | j.evaluated = false; |
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510 | break; |
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511 | } |
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512 | |
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513 | // add the new individual, replacing its previous source |
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514 | inds[q] = j; |
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515 | } |
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516 | return n; |
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517 | } |
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518 | } |
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