1 | #region License Information
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2 | /* HeuristicLab
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3 | * Copyright (C) 2002-2008 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
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4 | *
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5 | * This file is part of HeuristicLab.
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6 | *
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7 | * HeuristicLab is free software: you can redistribute it and/or modify
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8 | * it under the terms of the GNU General Public License as published by
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9 | * the Free Software Foundation, either version 3 of the License, or
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10 | * (at your option) any later version.
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11 | *
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12 | * HeuristicLab is distributed in the hope that it will be useful,
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13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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15 | * GNU General Public License for more details.
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16 | *
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17 | * You should have received a copy of the GNU General Public License
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18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
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19 | */
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20 | #endregion
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21 |
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22 | using System;
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23 | using System.Collections.Generic;
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24 | using System.Linq;
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25 | using System.Reflection;
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26 |
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27 | using HeuristicLab.Core;
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28 | using HeuristicLab.DataAnalysis;
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29 | using HeuristicLab.Data;
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30 | using System.Data.Linq;
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31 |
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32 | namespace HeuristicLab.Modeling.Database.SQLServerCompact {
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33 | public class DatabaseService : IModelingDatabase {
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34 | private readonly string connection;
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35 | public DatabaseService(string connection) {
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36 | this.connection = connection;
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37 | Connect();
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38 | if (!ctx.DatabaseExists())
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39 | ctx.CreateDatabase();
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40 | }
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41 |
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42 | public void EmptyDatabase() {
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43 | ctx.Connection.Dispose();
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44 | ctx.DeleteDatabase();
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45 | Connect();
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46 | ctx.CreateDatabase();
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47 | }
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48 |
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49 | private ModelingDataContext ctx;
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50 | public void Connect() {
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51 | if (ctx != null)
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52 | Disconnect();
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53 |
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54 | ctx = new ModelingDataContext(connection);
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55 | DataLoadOptions dlo = new DataLoadOptions();
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56 | dlo.LoadWith<ModelResult>(mr => mr.Result);
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57 | dlo.LoadWith<ModelMetaData>(mmd => mmd.MetaData);
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58 | dlo.LoadWith<InputVariableResult>(ir => ir.Variable);
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59 | dlo.LoadWith<InputVariableResult>(ir => ir.Result);
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60 | dlo.LoadWith<Model>(m => m.TargetVariable);
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61 | dlo.LoadWith<Model>(m => m.Algorithm);
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62 | ctx.LoadOptions = dlo;
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63 | }
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64 |
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65 | public void Disconnect() {
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66 | if (ctx == null)
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67 | return;
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68 | ctx.Connection.Dispose();
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69 | ctx.Dispose();
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70 | ctx = null;
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71 | }
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72 |
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73 | public IEnumerable<IModel> GetAllModels() {
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74 | return ctx.Models.ToList().Cast<IModel>();
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75 | }
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76 |
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77 | public IEnumerable<IVariable> GetAllVariables() {
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78 | return ctx.Variables.ToList().Cast<IVariable>();
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79 | }
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80 |
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81 | public IEnumerable<IResult> GetAllResults() {
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82 | return ctx.Results.ToList().Cast<IResult>();
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83 | }
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84 |
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85 | public IEnumerable<IResult> GetAllResultsForInputVariables() {
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86 | return (from ir in ctx.InputVariableResults select ir.Result).Distinct().ToList().Cast<IResult>();
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87 | }
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88 |
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89 | public IEnumerable<IMetaData> GetAllMetaData() {
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90 | return ctx.MetaData.ToList().Cast<IMetaData>();
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91 | }
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92 |
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93 | public IEnumerable<IAlgorithm> GetAllAlgorithms() {
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94 | return ctx.Algorithms.ToList().Cast<IAlgorithm>();
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95 | }
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96 |
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97 | public IModel CreateModel(int id, string modelName, ModelType modelType, IAlgorithm algorithm, IVariable targetVariable,
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98 | int trainingSamplesStart, int trainingSamplesEnd, int validationSamplesStart, int validationSamplesEnd, int testSamplesStart, int testSamplesEnd) {
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99 | Model m = (Model)CreateModel(modelName, modelType, algorithm, targetVariable, trainingSamplesStart, trainingSamplesEnd, validationSamplesStart, validationSamplesEnd, testSamplesStart, testSamplesEnd);
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100 | m.Id = id;
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101 | return m;
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102 | }
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103 |
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104 | public IModel CreateModel(string modelName, ModelType modelType, IAlgorithm algorithm, IVariable targetVariable,
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105 | int trainingSamplesStart, int trainingSamplesEnd, int validationSamplesStart, int validationSamplesEnd, int testSamplesStart, int testSamplesEnd) {
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106 | Variable target = (Variable)targetVariable;
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107 | Algorithm algo = (Algorithm)algorithm;
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108 | Model model = new Model(target, algo, modelType);
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109 | model.Name = modelName;
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110 | model.TrainingSamplesStart = trainingSamplesStart;
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111 | model.TrainingSamplesEnd = trainingSamplesEnd;
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112 | model.ValidationSamplesStart = validationSamplesStart;
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113 | model.ValidationSamplesEnd = validationSamplesEnd;
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114 | model.TestSamplesStart = testSamplesStart;
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115 | model.TestSamplesEnd = testSamplesEnd;
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116 |
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117 | return model;
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118 | }
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119 |
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120 | public void PersistModel(IModel model) {
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121 | using (ModelingDataContext ctx = new ModelingDataContext(connection)) {
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122 | Model m = (Model)model;
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123 | //check if model has to be updated or inserted
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124 | if (ctx.Models.Any(x => x.Id == model.Id)) {
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125 | Model orginal = ctx.Models.GetOriginalEntityState(m);
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126 | if (orginal == null)
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127 | ctx.Models.Attach(m);
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128 | ctx.Refresh(RefreshMode.KeepCurrentValues, m);
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129 | } else
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130 | ctx.Models.InsertOnSubmit(m);
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131 | ctx.SubmitChanges();
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132 | }
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133 | }
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134 |
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135 | public void DeleteModel(IModel model) {
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136 | Model m = (Model)model;
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137 | ctx.ModelData.DeleteAllOnSubmit(ctx.ModelData.Where(x => x.Model == m));
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138 | ctx.ModelMetaData.DeleteAllOnSubmit(ctx.ModelMetaData.Where(x => x.Model == m));
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139 | ctx.ModelResults.DeleteAllOnSubmit(ctx.ModelResults.Where(x => x.Model == m));
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140 | ctx.InputVariableResults.DeleteAllOnSubmit(ctx.InputVariableResults.Where(x => x.Model == m));
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141 | ctx.InputVariables.DeleteAllOnSubmit(ctx.InputVariables.Where(x => x.Model == m));
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142 | Model orginal = ctx.Models.GetOriginalEntityState(m);
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143 | if (orginal == null)
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144 | ctx.Models.Attach(m);
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145 | ctx.Models.DeleteOnSubmit(m);
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146 | ctx.SubmitChanges();
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147 | }
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148 |
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149 | public Dataset GetDataset() {
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150 | if (ctx.Problems.Count() > 1)
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151 | throw new InvalidOperationException("Could not get dataset. More than one problems are persisted in the database.");
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152 | if (ctx.Problems.Count() == 1)
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153 | return ctx.Problems.Single().Dataset;
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154 | return null;
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155 | }
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156 |
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157 | public void PersistProblem(Dataset dataset) {
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158 | Problem problem;
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159 | using (ModelingDataContext ctx = new ModelingDataContext(connection)) {
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160 | if (ctx.Problems.Count() != 0)
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161 | throw new InvalidOperationException("Could not persist dataset. A dataset is already saved in the database.");
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162 | problem = new Problem(dataset);
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163 | ctx.Problems.InsertOnSubmit(problem);
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164 | foreach (string variable in dataset.VariableNames) {
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165 | ctx.Variables.InsertOnSubmit(new Variable(variable));
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166 | }
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167 | ctx.SubmitChanges();
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168 | }
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169 | }
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170 |
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171 | public IVariable GetVariable(string variableName) {
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172 | var variables = ctx.Variables.Where(v => v.Name == variableName);
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173 | if (variables.Count() != 1)
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174 | throw new ArgumentException("Zero or more than one variable with the name " + variableName + " are persisted in the database.");
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175 | return variables.Single();
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176 | }
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177 |
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178 | public IPredictor GetModelPredictor(IModel model) {
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179 | var data = (from md in ctx.ModelData
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180 | where md.Model == model
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181 | select md);
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182 | if (data.Count() != 1)
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183 | throw new ArgumentException("No predictor persisted for given model!");
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184 | return (IPredictor)PersistenceManager.RestoreFromGZip(data.Single().Data);
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185 | }
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186 |
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187 | public void PersistPredictor(IModel model, IPredictor predictor) {
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188 | Model m = (Model)model;
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189 | using (ModelingDataContext ctx = new ModelingDataContext(connection)) {
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190 | ctx.ModelData.DeleteAllOnSubmit(ctx.ModelData.Where(x => x.Model == m));
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191 | ctx.ModelResults.DeleteAllOnSubmit(ctx.ModelResults.Where(x => x.Model == m));
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192 | ctx.InputVariableResults.DeleteAllOnSubmit(ctx.InputVariableResults.Where(x => x.Model == m));
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193 | ctx.InputVariables.DeleteAllOnSubmit(ctx.InputVariables.Where(x => x.Model == m));
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194 |
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195 | ctx.ModelData.InsertOnSubmit(new ModelData(m, PersistenceManager.SaveToGZip(predictor)));
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196 | foreach (string variableName in predictor.GetInputVariables())
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197 | ctx.InputVariables.InsertOnSubmit(new InputVariable(m, (Variable)GetVariable(variableName)));
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198 |
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199 | ctx.SubmitChanges();
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200 | }
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201 | }
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202 |
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203 | public IInputVariable GetInputVariable(IModel model, string inputVariableName) {
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204 | var inputVariables = ctx.InputVariables.Where(i => i.Model == model && i.Variable.Name == inputVariableName);
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205 | if (inputVariables.Count() == 1)
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206 | return inputVariables.Single();
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207 |
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208 | if (inputVariables.Count() > 1)
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209 | throw new ArgumentException("More than one input variable with the same name are for the given model persisted.");
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210 |
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211 | return null;
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212 | }
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213 |
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214 | public IAlgorithm GetOrPersistAlgorithm(string algorithmName) {
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215 | Algorithm algorithm;
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216 | using (ModelingDataContext ctx = new ModelingDataContext(connection)) {
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217 | var algorithms = ctx.Algorithms.Where(algo => algo.Name == algorithmName);
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218 | if (algorithms.Count() == 0) {
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219 | algorithm = new Algorithm(algorithmName, "");
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220 | ctx.Algorithms.InsertOnSubmit(algorithm);
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221 | ctx.SubmitChanges();
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222 | } else if (algorithms.Count() == 1)
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223 | algorithm = algorithms.Single();
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224 | else
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225 | throw new ArgumentException("Could not get Algorithm. More than one algorithm with the name " + algorithmName + " are saved in database.");
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226 | }
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227 | return algorithm;
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228 | }
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229 |
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230 | public IResult GetOrPersistResult(string resultName) {
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231 | Result result;
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232 | using (ModelingDataContext ctx = new ModelingDataContext(connection)) {
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233 | var results = ctx.Results.Where(r => r.Name == resultName);
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234 | if (results.Count() == 0) {
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235 | result = new Result(resultName);
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236 | ctx.Results.InsertOnSubmit(result);
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237 | ctx.SubmitChanges();
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238 | } else if (results.Count() == 1)
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239 | result = results.Single();
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240 | else
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241 | throw new ArgumentException("Could not get result. More than one result with the name " + resultName + " are saved in database.");
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242 | }
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243 | return result;
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244 | }
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245 |
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246 | public IMetaData GetOrPersistMetaData(string metaDataName) {
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247 | MetaData metadata;
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248 | using (ModelingDataContext ctx = new ModelingDataContext(connection)) {
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249 | var md = ctx.MetaData.Where(r => r.Name == metaDataName);
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250 | if (md.Count() == 0) {
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251 | metadata = new MetaData(metaDataName);
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252 | ctx.MetaData.InsertOnSubmit(metadata);
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253 | ctx.SubmitChanges();
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254 | } else if (md.Count() == 1)
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255 | metadata = md.Single();
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256 | else
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257 | throw new ArgumentException("Could not get metadata. More than one metadata with the name " + metaDataName + " are saved in database.");
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258 | }
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259 | return metadata;
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260 | }
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261 |
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262 | public IEnumerable<IModelResult> GetModelResults(IModel model) {
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263 | return ctx.ModelResults.Where(mr => mr.Model == model).Cast<IModelResult>();
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264 | }
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265 | public IEnumerable<IInputVariableResult> GetInputVariableResults(IModel model) {
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266 | return ctx.InputVariableResults.Where(ivr => ivr.Model == model).Cast<IInputVariableResult>();
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267 | }
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268 | public IEnumerable<IModelMetaData> GetModelMetaData(IModel model) {
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269 | return ctx.ModelMetaData.Where(md => md.Model == model).Cast<IModelMetaData>();
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270 | }
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271 |
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272 | public IModelResult CreateModelResult(IModel model, IResult result, double value) {
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273 | Model m = (Model)model;
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274 | Result r = (Result)result;
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275 | return new ModelResult(m, r, value);
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276 | }
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277 |
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278 | public void PersistModelResults(IModel model, IEnumerable<IModelResult> modelResults) {
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279 | using (ModelingDataContext ctx = new ModelingDataContext(connection)) {
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280 | ctx.ModelResults.DeleteAllOnSubmit(GetModelResults(model).Cast<ModelResult>());
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281 | ctx.ModelResults.InsertAllOnSubmit(modelResults.Cast<ModelResult>());
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282 | ctx.SubmitChanges();
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283 | }
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284 | }
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285 |
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286 | public IInputVariable CreateInputVariable(IModel model, IVariable variable) {
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287 | InputVariable inputVariable = new InputVariable((Model)model, (Variable)variable);
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288 | return inputVariable;
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289 | }
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290 |
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291 | public IInputVariableResult CreateInputVariableResult(IInputVariable inputVariable, IResult result, double value) {
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292 | InputVariable i = (InputVariable)inputVariable;
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293 | Result r = (Result)result;
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294 | return new InputVariableResult(i, r, value);
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295 | }
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296 |
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297 | public void PersistInputVariableResults(IModel model, IEnumerable<IInputVariableResult> inputVariableResults) {
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298 | using (ModelingDataContext ctx = new ModelingDataContext(connection)) {
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299 | ctx.InputVariableResults.DeleteAllOnSubmit(GetInputVariableResults(model).Cast<InputVariableResult>());
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300 | ctx.InputVariableResults.InsertAllOnSubmit(inputVariableResults.Cast<InputVariableResult>());
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301 | ctx.SubmitChanges();
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302 | }
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303 | }
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304 |
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305 | public IModelMetaData CreateModelMetaData(IModel model, IMetaData metadata, double value) {
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306 | Model m = (Model)model;
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307 | MetaData md = (MetaData)metadata;
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308 | return new ModelMetaData(m, md, value);
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309 | }
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310 |
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311 | public void PersistModelMetaData(IModel model, IEnumerable<IModelMetaData> modelMetaData) {
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312 | using (ModelingDataContext ctx = new ModelingDataContext(connection)) {
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313 | ctx.ModelMetaData.DeleteAllOnSubmit(GetModelMetaData(model).Cast<ModelMetaData>());
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314 | ctx.ModelMetaData.InsertAllOnSubmit(modelMetaData.Cast<ModelMetaData>());
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315 | ctx.SubmitChanges();
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316 | }
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317 | }
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318 |
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319 | public IModel Persist(HeuristicLab.Modeling.IAlgorithm algorithm) {
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320 | if (ctx.Problems.Count() == 0)
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321 | PersistProblem(algorithm.Dataset);
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322 | return Persist(algorithm.Model, algorithm.Name, algorithm.Description);
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323 | }
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324 |
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325 | public IModel Persist(HeuristicLab.Modeling.IAnalyzerModel model, string algorithmName, string algorithmDescription) {
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326 | Algorithm algorithm = (Algorithm)GetOrPersistAlgorithm(algorithmName);
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327 | Variable targetVariable = (Variable)GetVariable(model.TargetVariable);
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328 |
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329 | Model m = (Model)CreateModel(null, model.Type, algorithm, targetVariable, model.TrainingSamplesStart, model.TrainingSamplesEnd,
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330 | model.ValidationSamplesStart, model.ValidationSamplesEnd, model.TestSamplesStart, model.TestSamplesEnd);
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331 | PersistModel(m);
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332 | PersistPredictor(m, model.Predictor);
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333 |
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334 | using (ModelingDataContext ctx = new ModelingDataContext(connection)) {
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335 | foreach (KeyValuePair<string, double> pair in model.MetaData) {
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336 | MetaData metaData = (MetaData)GetOrPersistMetaData(pair.Key);
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337 | ctx.ModelMetaData.InsertOnSubmit(new ModelMetaData(m, metaData, pair.Value));
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338 | }
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339 | ctx.SubmitChanges();
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340 | }
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341 |
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342 | using (ModelingDataContext ctx = new ModelingDataContext(connection)) {
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343 | foreach (KeyValuePair<ModelingResult, double> pair in model.Results) {
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344 | Result result = (Result)GetOrPersistResult(pair.Key.ToString());
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345 | ctx.ModelResults.InsertOnSubmit(new ModelResult(m, result, pair.Value));
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346 | }
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347 | ctx.SubmitChanges();
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348 | }
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349 |
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350 | using (ModelingDataContext ctx = new ModelingDataContext(connection)) {
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351 | foreach (InputVariable variable in ctx.InputVariables.Where(iv => iv.Model == m)) {
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352 | foreach (KeyValuePair<ModelingResult, double> variableResult in model.GetVariableResults(variable.Variable.Name)) {
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353 | Result result = (Result)GetOrPersistResult(variableResult.Key.ToString());
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354 | ctx.InputVariableResults.InsertOnSubmit(new InputVariableResult(variable, result, variableResult.Value));
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355 | }
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356 | }
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357 | ctx.SubmitChanges();
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358 | }
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359 |
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360 | //if connected to database return inserted model
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361 | if (this.ctx != null)
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362 | return this.ctx.Models.Where(x => x.Id == m.Id).Single();
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363 | return null;
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364 | }
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365 | }
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366 | }
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