[9411] | 1 | #region License Information
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| 2 | /* HeuristicLab
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| 3 | * Copyright (C) 2002-2012 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
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| 4 | *
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| 5 | * This file is part of HeuristicLab.
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| 6 | *
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| 7 | * HeuristicLab is free software: you can redistribute it and/or modify
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| 8 | * it under the terms of the GNU General Public License as published by
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| 9 | * the Free Software Foundation, either version 3 of the License, or
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| 10 | * (at your option) any later version.
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| 11 | *
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| 12 | * HeuristicLab is distributed in the hope that it will be useful,
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| 13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 15 | * GNU General Public License for more details.
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| 16 | *
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| 17 | * You should have received a copy of the GNU General Public License
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| 18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
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| 19 | */
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| 20 | #endregion
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| 21 |
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| 22 | using System;
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| 23 | using System.Collections.Generic;
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| 24 | using System.Drawing;
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| 25 | using System.Linq;
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| 26 | using HeuristicLab.Collections;
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| 27 | using HeuristicLab.Common;
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| 28 | using HeuristicLab.Core;
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| 29 | using HeuristicLab.Data;
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| 30 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
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| 31 |
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| 32 | namespace HeuristicLab.Optimization.Operators.LCS {
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| 33 | [StorableClass]
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| 34 | [Item("GAssistEnsembleSolution", "Represents a GAssist ensemble.")]
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| 35 | [Creatable("Data Analysis - Ensembles")]
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| 36 | public class GAssistEnsembleSolution : ResultCollection, IGAssistEnsembleSolution {
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| 37 | private readonly Dictionary<int, IGAssistNiche> trainingEvaluationCache = new Dictionary<int, IGAssistNiche>();
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| 38 | private readonly Dictionary<int, IGAssistNiche> testEvaluationCache = new Dictionary<int, IGAssistNiche>();
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| 39 | private readonly Dictionary<int, IGAssistNiche> evaluationCache = new Dictionary<int, IGAssistNiche>();
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| 40 |
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| 41 | private const string ModelResultName = "Model";
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| 42 | private const string ProblemDataResultName = "ProblemData";
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| 43 | private const string TrainingAccuracyResultName = "Accuracy (training)";
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| 44 | private const string TestAccuracyResultName = "Accuracy (test)";
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| 45 |
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| 46 | public string Filename { get; set; }
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| 47 |
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| 48 | public static new Image StaticItemImage {
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| 49 | get { return HeuristicLab.Common.Resources.VSImageLibrary.Function; }
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| 50 | }
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| 51 |
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| 52 | public double TrainingAccuracy {
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| 53 | get { return ((PercentValue)this[TrainingAccuracyResultName].Value).Value; }
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| 54 | private set { ((PercentValue)this[TrainingAccuracyResultName].Value).Value = value; }
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| 55 | }
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| 56 | public double TestAccuracy {
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| 57 | get { return ((PercentValue)this[TestAccuracyResultName].Value).Value; }
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| 58 | private set { ((PercentValue)this[TestAccuracyResultName].Value).Value = value; }
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| 59 | }
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| 60 |
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| 61 | #region properties
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| 62 | public IGAssistEnsembleModel Model {
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| 63 | get { return (IGAssistEnsembleModel)this[ModelResultName].Value; }
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| 64 | protected set {
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| 65 | if (this[ModelResultName].Value != value) {
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| 66 | if (value != null) {
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| 67 | this[ModelResultName].Value = value;
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| 68 | OnModelChanged();
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| 69 | }
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| 70 | }
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| 71 | }
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| 72 | }
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| 73 |
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| 74 | public IGAssistEnsembleProblemData ProblemData {
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| 75 | get { return (IGAssistEnsembleProblemData)this[ProblemDataResultName].Value; }
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| 76 | set {
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| 77 | if (this[ProblemDataResultName].Value != value) {
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| 78 | if (value != null) {
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| 79 | ProblemData.Changed -= new EventHandler(ProblemData_Changed);
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| 80 | this[ProblemDataResultName].Value = value;
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| 81 | ProblemData.Changed += new EventHandler(ProblemData_Changed);
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| 82 | OnProblemDataChanged();
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| 83 | }
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| 84 | }
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| 85 | }
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| 86 | }
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| 87 |
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| 88 | private void ProblemData_Changed(object sender, EventArgs e) {
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| 89 | OnProblemDataChanged();
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| 90 | }
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| 91 | #endregion
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| 92 |
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| 93 | private readonly ItemCollection<IGAssistSolution> gassistSolutions;
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| 94 | public IItemCollection<IGAssistSolution> GAssistSolutions {
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| 95 | get { return gassistSolutions; }
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| 96 | }
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| 97 |
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| 98 | [Storable]
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| 99 | private Dictionary<IGAssistModel, IntRange> trainingPartitions;
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| 100 | [Storable]
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| 101 | private Dictionary<IGAssistModel, IntRange> testPartitions;
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| 102 |
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| 103 | [StorableHook(HookType.AfterDeserialization)]
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| 104 | private void AfterDeserialization() {
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| 105 | foreach (var model in Model.Models) {
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| 106 | IGAssistProblemData problemData = ProblemData.GetGAssistProblemData();
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| 107 | problemData.TrainingPartition.Start = trainingPartitions[model].Start;
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| 108 | problemData.TrainingPartition.End = trainingPartitions[model].End;
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| 109 | problemData.TestPartition.Start = testPartitions[model].Start;
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| 110 | problemData.TestPartition.End = testPartitions[model].End;
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| 111 |
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| 112 | gassistSolutions.Add(model.CreateGAssistSolution(problemData));
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| 113 | }
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| 114 | RegisterGAssistSolutionsEventHandler();
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| 115 | }
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| 116 |
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| 117 | [StorableConstructor]
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| 118 | protected GAssistEnsembleSolution(bool deserializing)
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| 119 | : base(deserializing) {
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| 120 | gassistSolutions = new ItemCollection<IGAssistSolution>();
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| 121 | }
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| 122 | protected GAssistEnsembleSolution(GAssistEnsembleSolution original, Cloner cloner)
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| 123 | : base(original, cloner) {
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| 124 | trainingPartitions = new Dictionary<IGAssistModel, IntRange>();
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| 125 | testPartitions = new Dictionary<IGAssistModel, IntRange>();
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| 126 | foreach (var pair in original.trainingPartitions) {
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| 127 | trainingPartitions[cloner.Clone(pair.Key)] = cloner.Clone(pair.Value);
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| 128 | }
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| 129 | foreach (var pair in original.testPartitions) {
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| 130 | testPartitions[cloner.Clone(pair.Key)] = cloner.Clone(pair.Value);
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| 131 | }
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| 132 |
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| 133 | trainingEvaluationCache = new Dictionary<int, IGAssistNiche>(original.ProblemData.TrainingIndices.Count());
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| 134 | testEvaluationCache = new Dictionary<int, IGAssistNiche>(original.ProblemData.TestIndices.Count());
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| 135 |
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| 136 | gassistSolutions = cloner.Clone(original.gassistSolutions);
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| 137 | RegisterGAssistSolutionsEventHandler();
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| 138 | }
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| 139 |
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| 140 | public GAssistEnsembleSolution(IEnumerable<IGAssistModel> models, IGAssistProblemData problemData)
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| 141 | : this(models, problemData,
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| 142 | models.Select(m => (IntRange)problemData.TrainingPartition.Clone()),
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| 143 | models.Select(m => (IntRange)problemData.TestPartition.Clone())
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| 144 | ) { }
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| 145 |
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| 146 | public GAssistEnsembleSolution()
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| 147 | : base() {
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| 148 | trainingPartitions = new Dictionary<IGAssistModel, IntRange>();
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| 149 | testPartitions = new Dictionary<IGAssistModel, IntRange>();
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| 150 | gassistSolutions = new ItemCollection<IGAssistSolution>();
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| 151 |
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| 152 | RegisterGAssistSolutionsEventHandler();
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| 153 | }
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| 154 |
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| 155 | public GAssistEnsembleSolution(IGAssistProblemData problemData)
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| 156 | : this(Enumerable.Empty<IGAssistModel>(), problemData) {
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| 157 | }
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| 158 |
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| 159 | public GAssistEnsembleSolution(IEnumerable<IGAssistModel> models, IGAssistProblemData problemData, IEnumerable<IntRange> trainingPartitions, IEnumerable<IntRange> testPartitions)
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| 160 | : base() {
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| 161 | Add(new Result(ModelResultName, "The data analysis model.", new GAssistEnsembleModel(Enumerable.Empty<IGAssistModel>())));
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| 162 | Add(new Result(ProblemDataResultName, "The data analysis problem data.", new GAssistEnsembleProblemData((IGAssistProblemData)problemData.Clone())));
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| 163 | Add(new Result(TrainingAccuracyResultName, "Accuracy of the model on the training partition (percentage of correctly classified instances).", new PercentValue()));
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| 164 | Add(new Result(TestAccuracyResultName, "Accuracy of the model on the test partition (percentage of correctly classified instances).", new PercentValue()));
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| 165 |
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| 166 | this.trainingPartitions = new Dictionary<IGAssistModel, IntRange>();
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| 167 | this.testPartitions = new Dictionary<IGAssistModel, IntRange>();
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| 168 | this.gassistSolutions = new ItemCollection<IGAssistSolution>();
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| 169 |
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| 170 | List<IGAssistSolution> solutions = new List<IGAssistSolution>();
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| 171 | var modelEnumerator = models.GetEnumerator();
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| 172 | var trainingPartitionEnumerator = trainingPartitions.GetEnumerator();
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| 173 | var testPartitionEnumerator = testPartitions.GetEnumerator();
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| 174 |
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| 175 | while (modelEnumerator.MoveNext() & trainingPartitionEnumerator.MoveNext() & testPartitionEnumerator.MoveNext()) {
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| 176 | var p = (IGAssistProblemData)problemData.Clone();
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| 177 | p.TrainingPartition.Start = trainingPartitionEnumerator.Current.Start;
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| 178 | p.TrainingPartition.End = trainingPartitionEnumerator.Current.End;
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| 179 | p.TestPartition.Start = testPartitionEnumerator.Current.Start;
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| 180 | p.TestPartition.End = testPartitionEnumerator.Current.End;
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| 181 |
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| 182 | solutions.Add(modelEnumerator.Current.CreateGAssistSolution(p));
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| 183 | }
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| 184 | if (modelEnumerator.MoveNext() | trainingPartitionEnumerator.MoveNext() | testPartitionEnumerator.MoveNext()) {
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| 185 | throw new ArgumentException();
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| 186 | }
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| 187 |
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| 188 | trainingEvaluationCache = new Dictionary<int, IGAssistNiche>(problemData.TrainingIndices.Count());
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| 189 | testEvaluationCache = new Dictionary<int, IGAssistNiche>(problemData.TestIndices.Count());
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| 190 |
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| 191 | RegisterGAssistSolutionsEventHandler();
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| 192 | gassistSolutions.AddRange(solutions);
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| 193 | }
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| 194 |
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| 195 | public override IDeepCloneable Clone(Cloner cloner) {
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| 196 | return new GAssistEnsembleSolution(this, cloner);
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| 197 | }
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| 198 |
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| 199 | private void RegisterGAssistSolutionsEventHandler() {
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| 200 | gassistSolutions.ItemsAdded += new CollectionItemsChangedEventHandler<IGAssistSolution>(gassistSolutions_ItemsAdded);
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| 201 | gassistSolutions.ItemsRemoved += new CollectionItemsChangedEventHandler<IGAssistSolution>(gassistSolutions_ItemsRemoved);
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| 202 | gassistSolutions.CollectionReset += new CollectionItemsChangedEventHandler<IGAssistSolution>(gassistSolutions_CollectionReset);
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| 203 | }
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| 204 |
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| 205 | #region Evaluation
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| 206 | public IEnumerable<IGAssistNiche> EstimatedNiches {
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| 207 | get { return GetEstimatedNiches(Enumerable.Range(0, ProblemData.Dataset.Rows)); }
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| 208 | }
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| 209 |
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| 210 | public IEnumerable<IGAssistNiche> EstimatedTrainingNiche {
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| 211 | get {
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| 212 | var rows = ProblemData.TrainingIndices;
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| 213 | var rowsToEvaluate = rows.Except(trainingEvaluationCache.Keys);
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| 214 | var rowsEnumerator = rowsToEvaluate.GetEnumerator();
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| 215 | var valuesEnumerator = GetEstimatedValues(rowsToEvaluate, (r, m) => RowIsTrainingForModel(r, m) && !RowIsTestForModel(r, m)).GetEnumerator();
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| 216 |
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| 217 | while (rowsEnumerator.MoveNext() & valuesEnumerator.MoveNext()) {
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| 218 | trainingEvaluationCache.Add(rowsEnumerator.Current, valuesEnumerator.Current);
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| 219 | }
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| 220 |
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| 221 | return rows.Select(row => trainingEvaluationCache[row]);
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| 222 | }
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| 223 | }
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| 224 |
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| 225 | public IEnumerable<IGAssistNiche> EstimatedTestNiche {
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| 226 | get {
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| 227 | var rows = ProblemData.TestIndices;
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| 228 | var rowsToEvaluate = rows.Except(testEvaluationCache.Keys);
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| 229 | var rowsEnumerator = rowsToEvaluate.GetEnumerator();
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| 230 | var valuesEnumerator = GetEstimatedValues(rowsToEvaluate, RowIsTestForModel).GetEnumerator();
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| 231 |
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| 232 | while (rowsEnumerator.MoveNext() & valuesEnumerator.MoveNext()) {
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| 233 | testEvaluationCache.Add(rowsEnumerator.Current, valuesEnumerator.Current);
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| 234 | }
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| 235 |
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| 236 | return rows.Select(row => testEvaluationCache[row]);
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| 237 | }
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| 238 | }
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| 239 |
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| 240 | public IEnumerable<IGAssistNiche> GetEstimatedNiches(IEnumerable<int> rows) {
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| 241 | var rowsToEvaluate = rows.Except(evaluationCache.Keys);
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| 242 | var rowsEnumerator = rowsToEvaluate.GetEnumerator();
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| 243 |
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| 244 | var valuesEnumerator = (from xs in GetEstimatedNicheVectors(ProblemData.FetchInput(rows))
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| 245 | select AggregateEstimatedClassValues(xs))
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| 246 | .GetEnumerator();
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| 247 |
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| 248 | while (rowsEnumerator.MoveNext() & valuesEnumerator.MoveNext()) {
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| 249 | evaluationCache.Add(rowsEnumerator.Current, valuesEnumerator.Current);
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| 250 | }
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| 251 |
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| 252 | return rows.Select(row => evaluationCache[row]);
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| 253 | }
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| 254 |
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| 255 | public IEnumerable<IEnumerable<IGAssistNiche>> GetEstimatedNicheVectors(IEnumerable<IGAssistInput> input) {
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| 256 | if (!Model.Models.Any()) yield break;
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| 257 | var estimatedValuesEnumerators = (from model in Model.Models
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| 258 | select model.Evaluate(input).GetEnumerator())
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| 259 | .ToList();
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| 260 |
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| 261 | while (estimatedValuesEnumerators.All(en => en.MoveNext())) {
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| 262 | yield return from enumerator in estimatedValuesEnumerators
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| 263 | select enumerator.Current;
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| 264 | }
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| 265 | }
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| 266 |
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| 267 | private IEnumerable<IGAssistNiche> GetEstimatedValues(IEnumerable<int> rows, Func<int, IGAssistModel, bool> modelSelectionPredicate) {
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| 268 | var input = ProblemData.FetchInput(rows);
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| 269 | var estimatedValuesEnumerators = (from model in Model.Models
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| 270 | select new { Model = model, EstimatedValuesEnumerator = model.Evaluate(input).GetEnumerator() })
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| 271 | .ToList();
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| 272 | var rowsEnumerator = rows.GetEnumerator();
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| 273 | // aggregate to make sure that MoveNext is called for all enumerators
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| 274 | while (rowsEnumerator.MoveNext() & estimatedValuesEnumerators.Select(en => en.EstimatedValuesEnumerator.MoveNext()).Aggregate(true, (acc, b) => acc & b)) {
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| 275 | int currentRow = rowsEnumerator.Current;
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| 276 |
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| 277 | var selectedEnumerators = from pair in estimatedValuesEnumerators
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| 278 | where modelSelectionPredicate(currentRow, pair.Model)
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| 279 | select pair.EstimatedValuesEnumerator;
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| 280 |
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| 281 | yield return AggregateEstimatedClassValues(selectedEnumerators.Select(x => x.Current));
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| 282 | }
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| 283 | }
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| 284 |
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| 285 | private IGAssistNiche AggregateEstimatedClassValues(IEnumerable<IGAssistNiche> estimatedNiches) {
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| 286 | return estimatedNiches
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| 287 | .GroupBy(x => x, new GAssistNicheComparer())
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| 288 | .OrderByDescending(g => g.Count())
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| 289 | .Select(g => g.Key)
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| 290 | .FirstOrDefault();
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| 291 | }
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| 292 |
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| 293 | private void RecalculateResults() {
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| 294 | var originalTrainingCondition = ProblemData.FetchInput(ProblemData.TrainingIndices);
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| 295 | var originalTestCondition = ProblemData.FetchInput(ProblemData.TestIndices);
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| 296 | var estimatedTraining = EstimatedTrainingNiche;
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| 297 | var estimatedTest = EstimatedTestNiche;
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| 298 |
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| 299 | var originalTrainingAction = ProblemData.FetchAction(ProblemData.TrainingIndices);
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| 300 | var originalTestAction = ProblemData.FetchAction(ProblemData.TestIndices);
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| 301 |
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| 302 | TrainingAccuracy = CalculateAccuracy(originalTrainingAction, estimatedTraining);
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| 303 | TestAccuracy = CalculateAccuracy(originalTestAction, estimatedTest);
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| 304 | }
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| 305 |
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| 306 | public static double CalculateAccuracy(IEnumerable<IGAssistNiche> original, IEnumerable<IGAssistNiche> estimated) {
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| 307 | double correctClassified = 0;
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| 308 |
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| 309 | double rows = original.Count();
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| 310 | var originalEnumerator = original.GetEnumerator();
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| 311 | var estimatedActionEnumerator = estimated.GetEnumerator();
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| 312 |
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| 313 | while (originalEnumerator.MoveNext() && estimatedActionEnumerator.MoveNext()) {
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| 314 | if (originalEnumerator.Current != null && estimatedActionEnumerator.Current != null
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| 315 | && originalEnumerator.Current.SameNiche(estimatedActionEnumerator.Current)) {
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| 316 | correctClassified++;
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| 317 | }
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| 318 | }
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| 319 | return correctClassified / rows;
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| 320 | }
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| 321 |
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| 322 | private bool RowIsTrainingForModel(int currentRow, IGAssistModel model) {
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| 323 | return trainingPartitions == null || !trainingPartitions.ContainsKey(model) ||
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| 324 | (trainingPartitions[model].Start <= currentRow && currentRow < trainingPartitions[model].End);
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| 325 | }
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| 326 |
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| 327 | private bool RowIsTestForModel(int currentRow, IGAssistModel model) {
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| 328 | return testPartitions == null || !testPartitions.ContainsKey(model) ||
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| 329 | (testPartitions[model].Start <= currentRow && currentRow < testPartitions[model].End);
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| 330 | }
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| 331 | #endregion
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| 332 |
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| 333 | public event EventHandler ProblemDataChanged;
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| 334 | protected void OnProblemDataChanged() {
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| 335 | trainingEvaluationCache.Clear();
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| 336 | testEvaluationCache.Clear();
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| 337 | evaluationCache.Clear();
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| 338 |
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| 339 | IGAssistProblemData problemData = ProblemData.GetGAssistProblemData();
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| 340 |
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| 341 | problemData.TrainingPartition.Start = ProblemData.TrainingPartition.Start;
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| 342 | problemData.TrainingPartition.End = ProblemData.TrainingPartition.End;
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| 343 | problemData.TestPartition.Start = ProblemData.TestPartition.Start;
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| 344 | problemData.TestPartition.End = ProblemData.TestPartition.End;
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| 345 |
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| 346 | foreach (var solution in GAssistSolutions) {
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| 347 | if (solution is GAssistEnsembleSolution)
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| 348 | solution.ProblemData = ProblemData;
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| 349 | else
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| 350 | solution.ProblemData = problemData;
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| 351 | }
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| 352 | foreach (var trainingPartition in trainingPartitions.Values) {
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| 353 | trainingPartition.Start = ProblemData.TrainingPartition.Start;
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| 354 | trainingPartition.End = ProblemData.TrainingPartition.End;
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| 355 | }
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| 356 | foreach (var testPartition in testPartitions.Values) {
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| 357 | testPartition.Start = ProblemData.TestPartition.Start;
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| 358 | testPartition.End = ProblemData.TestPartition.End;
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| 359 | }
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| 360 |
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| 361 | RecalculateResults();
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| 362 | var listeners = ProblemDataChanged;
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| 363 | if (listeners != null) listeners(this, EventArgs.Empty);
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| 364 | }
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| 365 |
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| 366 | public event EventHandler ModelChanged;
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| 367 | protected virtual void OnModelChanged() {
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| 368 | RecalculateResults();
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| 369 | var listeners = ModelChanged;
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| 370 | if (listeners != null) listeners(this, EventArgs.Empty);
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| 371 | }
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| 372 |
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| 373 | public void AddGAssistSolutions(IEnumerable<IGAssistSolution> solutions) {
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| 374 | gassistSolutions.AddRange(solutions);
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| 375 |
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| 376 | trainingEvaluationCache.Clear();
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| 377 | testEvaluationCache.Clear();
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| 378 | evaluationCache.Clear();
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| 379 | }
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| 380 | public void RemoveGAssistSolutions(IEnumerable<IGAssistSolution> solutions) {
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| 381 | gassistSolutions.RemoveRange(solutions);
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| 382 |
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| 383 | trainingEvaluationCache.Clear();
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| 384 | testEvaluationCache.Clear();
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| 385 | evaluationCache.Clear();
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| 386 | }
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| 387 |
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| 388 | private void gassistSolutions_ItemsAdded(object sender, CollectionItemsChangedEventArgs<IGAssistSolution> e) {
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| 389 | foreach (var solution in e.Items) AddGAssistSolution(solution);
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| 390 | RecalculateResults();
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| 391 | }
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| 392 | private void gassistSolutions_ItemsRemoved(object sender, CollectionItemsChangedEventArgs<IGAssistSolution> e) {
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| 393 | foreach (var solution in e.Items) RemoveGAssistSolution(solution);
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| 394 | RecalculateResults();
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| 395 | }
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| 396 | private void gassistSolutions_CollectionReset(object sender, CollectionItemsChangedEventArgs<IGAssistSolution> e) {
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| 397 | foreach (var solution in e.OldItems) RemoveGAssistSolution(solution);
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| 398 | foreach (var solution in e.Items) AddGAssistSolution(solution);
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| 399 | RecalculateResults();
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| 400 | }
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| 401 |
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| 402 | private void AddGAssistSolution(IGAssistSolution solution) {
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| 403 | if (Model.Models.Contains(solution.Model)) throw new ArgumentException();
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| 404 | Model.Add(solution.Model);
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| 405 | trainingPartitions[solution.Model] = solution.ProblemData.TrainingPartition;
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| 406 | testPartitions[solution.Model] = solution.ProblemData.TestPartition;
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| 407 |
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| 408 | trainingEvaluationCache.Clear();
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| 409 | testEvaluationCache.Clear();
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| 410 | evaluationCache.Clear();
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| 411 | }
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| 412 |
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| 413 | private void RemoveGAssistSolution(IGAssistSolution solution) {
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| 414 | if (!Model.Models.Contains(solution.Model)) throw new ArgumentException();
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| 415 | Model.Remove(solution.Model);
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| 416 | trainingPartitions.Remove(solution.Model);
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| 417 | testPartitions.Remove(solution.Model);
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| 418 |
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| 419 | trainingEvaluationCache.Clear();
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| 420 | testEvaluationCache.Clear();
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| 421 | evaluationCache.Clear();
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| 422 | }
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| 423 |
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| 424 | #region IGAssistSolution Members
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| 425 | IGAssistModel IGAssistSolution.Model {
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| 426 | get { return Model; }
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| 427 | }
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| 428 | IGAssistProblemData IGAssistSolution.ProblemData {
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| 429 | get { return ProblemData; }
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| 430 | set { ProblemData = new GAssistEnsembleProblemData(value); }
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| 431 | }
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| 432 | public int TrainingNumberOfAliveRules {
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| 433 | get { return gassistSolutions.Sum(x => x.TrainingNumberOfAliveRules); }
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| 434 | }
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| 435 | public double TrainingTheoryLength {
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| 436 | get { return gassistSolutions.Sum(x => x.TrainingTheoryLength); }
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| 437 | }
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| 438 | public double TrainingExceptionsLength {
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| 439 | get { return 105.0 - TrainingAccuracy * 100.0; }
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| 440 | }
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| 441 | public int Classes {
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| 442 | get { return ProblemData.Classes; }
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| 443 | }
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| 444 | #endregion
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| 445 | }
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| 446 | }
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