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source: branches/HeuristicLab.Problems.GaussianProcessTuning/ILNumerics.2.14.4735.573/Functions/builtin/mvnpdf.cs @ 9407

Last change on this file since 9407 was 9102, checked in by gkronber, 12 years ago

#1967: ILNumerics source for experimentation

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1///
2///    This file is part of ILNumerics Community Edition.
3///
4///    ILNumerics Community Edition - high performance computing for applications.
5///    Copyright (C) 2006 - 2012 Haymo Kutschbach, http://ilnumerics.net
6///
7///    ILNumerics Community Edition is free software: you can redistribute it and/or modify
8///    it under the terms of the GNU General Public License version 3 as published by
9///    the Free Software Foundation.
10///
11///    ILNumerics Community Edition is distributed in the hope that it will be useful,
12///    but WITHOUT ANY WARRANTY; without even the implied warranty of
13///    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14///    GNU General Public License for more details.
15///
16///    You should have received a copy of the GNU General Public License
17///    along with ILNumerics Community Edition. See the file License.txt in the root
18///    of your distribution package. If not, see <http://www.gnu.org/licenses/>.
19///
20///    In addition this software uses the following components and/or licenses:
21///
22///    =================================================================================
23///    The Open Toolkit Library License
24///   
25///    Copyright (c) 2006 - 2009 the Open Toolkit library.
26///   
27///    Permission is hereby granted, free of charge, to any person obtaining a copy
28///    of this software and associated documentation files (the "Software"), to deal
29///    in the Software without restriction, including without limitation the rights to
30///    use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
31///    the Software, and to permit persons to whom the Software is furnished to do
32///    so, subject to the following conditions:
33///
34///    The above copyright notice and this permission notice shall be included in all
35///    copies or substantial portions of the Software.
36///
37///    =================================================================================
38///   
39
40using System;
41using System.Collections.Generic;
42using System.Text;
43using ILNumerics;
44using ILNumerics.Exceptions;
45using ILNumerics.Storage;
46using ILNumerics.Misc;
47
48
49
50namespace ILNumerics {
51
52    public partial class ILMath {
53
54        /// <summary>
55        /// Probability density function for a multivariate normal random distribution
56        /// </summary>
57        /// <param name="A">Matrix of points in columns, where the probability density function is to be evaluated</param>
58        /// <param name="mu">[Optional] Centers, size d x 1, if 'null': zeros are attempted, default: null</param>
59        /// <param name="sigma">Covariance matrix, must be positive definite, size d x d or vector of lenght d</param>
60        /// <returns>Random numbers as taken from the multivariate random probability distribution given by mu and sigma</returns>
61        public static ILRetArray<double> mvnpdf(ILInArray<double> A, ILInArray<double> mu = null, ILInArray<double> sigma = null) {
62            using (ILScope.Enter(mu, sigma)) {
63                if (isnull(A)) {
64                    throw new ILArgumentException("input parameter 'samples' may not be null");
65                }
66                int d = A.S[0], n = A.S[1];
67                if (A.IsEmpty) {
68                    if (d > 0)
69                        return empty<double>(A.S);
70                    else {
71                        return empty<double>(ILSize.Empty00);
72                    }
73                }
74                // early exit, trivial case
75                if (isnullorempty(mu) && isnullorempty(sigma)) {
76                    return 1 / (pow(sqrt(2 * pi), d)) * exp(-0.5f * (diag(multiply(A.T, A))));
77                }
78                ILArray<double> muLoc = mu;
79                if (isnullorempty(mu)) {
80                    muLoc.a = zeros<double>(d,1);     
81                }
82                ILArray<double> sigmaLoc = sigma;
83                if (isnullorempty(sigma)) {
84                    sigmaLoc.a = eye<double>(d,d);     
85                }
86                ILArray<double> sampMinMu = A - muLoc;
87                return 1 / (pow(sqrt(2 * pi), d) * det(sigmaLoc)) * exp(-0.5 * (diag(multiply(sampMinMu.T, eye(d, d) / sigmaLoc, sampMinMu))));
88            }
89        }
90
91        /// <summary>
92        /// Probability density function for a multivariate normal random distribution
93        /// </summary>
94        /// <param name="A">Matrix of points in columns, where the probability density function is to be evaluated</param>
95        /// <param name="mu">[Optional] Centers, size d x 1, if 'null': zeros are attempted, default: null</param>
96        /// <param name="sigma">Covariance matrix, must be positive definite, size d x d or vector of lenght d</param>
97        /// <returns>Random numbers as taken from the multivariate random probability distribution given by mu and sigma</returns>
98        public static ILRetArray<float> mvnpdf(ILInArray<float> A, ILInArray<float> mu = null, ILInArray<float> sigma = null) {
99            using (ILScope.Enter(mu, sigma)) {
100                if (isnull(A)) {
101                    throw new ILArgumentException("input parameter 'samples' may not be null");
102                }
103                int d = A.S[0], n = A.S[1];
104                if (A.IsEmpty) {
105                    if (d > 0)
106                        return empty<float>(A.S);
107                    else {
108                        return empty<float>(ILSize.Empty00);
109                    }
110                }
111                // early exit, trivial case
112                if (isnullorempty(mu) && isnullorempty(sigma)) {
113                    return 1 / tosingle(pow(sqrt(2 * pi), d)) * exp(-0.5f * (diag(multiply(A.T, A))));
114                }
115                ILArray<float> muLoc = mu;
116                if (isnullorempty(mu)) {
117                    muLoc.a = zeros<float>(d,1);     
118                }
119                ILArray<float> sigmaLoc = sigma;
120                if (isnullorempty(sigma)) {
121                    sigmaLoc.a = eye<float>(d,d);     
122                }
123                ILArray<float> sampMinMu = A - muLoc;
124                return 1f / tosingle(pow(sqrt(2 * pi), d)) * det(sigmaLoc) * exp(-0.5f * (diag(multiply(sampMinMu.T, eye<float>(d, d) / sigmaLoc, sampMinMu))));
125            }
126        }
127
128    }
129}
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