1 | using System.Collections.Generic;
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2 | using System.Linq;
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3 | using HeuristicLab.Common;
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4 | using HeuristicLab.Core;
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5 | using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
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6 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
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7 |
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8 | namespace HeuristicLab.Problems.GaussianProcessTuning {
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9 | [StorableClass]
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10 | [Item("Gaussian Process Configuration Grammar", "The grammar for the Gaussian process configration problem.")]
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11 | public sealed class Grammar : SymbolicExpressionGrammar {
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12 | [Storable]
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13 | private int dimension;
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14 | public int Dimension {
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15 | get { return dimension; }
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16 | set {
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17 | if (dimension != value) {
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18 | dimension = value;
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19 | UpdateSymbolDimension();
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20 | }
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21 | }
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22 | }
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23 |
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24 | [StorableConstructor]
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25 | private Grammar(bool deserializing) : base(deserializing) { }
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26 | private Grammar(Grammar original, Cloner cloner)
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27 | : base(original, cloner) {
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28 | }
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29 |
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30 | public Grammar()
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31 | : base("Gaussian Process Configuration Grammar", "The grammar for the Gaussian process configuration problem.") {
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32 | Dimension = 10;
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33 | Initialize();
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34 | }
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35 |
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36 | [StorableHook(HookType.AfterDeserialization)]
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37 | private void AfterDeserialization() {
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38 | }
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39 | public override IDeepCloneable Clone(Cloner cloner) {
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40 | return new Grammar(this, cloner);
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41 | }
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42 | private void Initialize() {
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43 | // create all symbols
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44 | var meanZero = new MeanZero();
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45 | //var meanOne = new MeanOne();
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46 | //var meanConst = new MeanConst();
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47 | //var meanLinear = new MeanLinear(Dimension);
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48 | //var meanScale = new MeanScale();
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49 | //var meanSum = new MeanSum();
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50 | //var meanProd = new MeanProd();
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51 | //var meanPow2 = new MeanPow(2) { Name = "MeanPow2" };
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52 | //var meanPow3 = new MeanPow(3) { Name = "MeanPow3" };
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53 | //var meanMask = new MeanMask(Dimension);
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54 | var covConst = new CovConst();
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55 | var covLin = new CovLin();
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56 | var covLinArd = new CovLinArd(Dimension);
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57 | var covSeArd = new CovSeArd(Dimension);
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58 | var covSeIso = new CovSeIso();
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59 | var covRQard = new CovRQArd(Dimension);
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60 | var covRQiso = new CovRQIso();
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61 | var covNN = new CovNn();
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62 | var covPoly = new CovPoly();
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63 | var covPPoly = new CovPiecewisePoly();
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64 | var covMatern1 = new CovMatern(1);
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65 | covMatern1.Name = "CovMatern1";
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66 | var covMatern3 = new CovMatern(3);
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67 | covMatern3.Name = "CovMatern3";
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68 | var covMatern5 = new CovMatern(5);
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69 | covMatern5.Name = "CovMatern5";
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70 | var covPeriodic = new CovPeriodic();
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71 | var covPeriodic1 = new CovPeriodic(1.0);
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72 | covPeriodic1.Name = "CovPeriodic(1.0)";
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73 | //var covPeriodicCO = new CovPeriodic(0.021817864467425927);
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74 | //covPeriodicCO.Name = "CovPeriodicCO";
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75 | var covNoise = new CovNoise();
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76 | var covScale = new CovScale();
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77 | var covSum = new CovSum();
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78 | var covProd = new CovProd();
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79 | var covMask = new CovMask(Dimension);
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80 | var likGauss = new LikGauss();
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81 |
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82 | var configurationStartSymbol = new ConfigurationStartSymbol();
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83 |
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84 | var meanSymbols = new List<ISymbol>()
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85 | {
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86 | meanZero,
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87 | //meanConst,
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88 | //meanLinear,
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89 | //meanSum,
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90 | //meanProd,
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91 | //meanPow2,
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92 | //meanPow3,
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93 | //meanMask,
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94 | };
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95 | var covSymbols = new List<ISymbol>()
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96 | {
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97 | covConst,
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98 | covLin,
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99 | covLinArd,
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100 | covSeArd,
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101 | covSeIso,
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102 | covRQiso,
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103 | covRQard,
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104 | covMatern1,
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105 | covMatern3,
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106 | covMatern5,
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107 | covNN,
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108 | covPoly,
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109 | covPPoly,
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110 | covPeriodic,
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111 | covPeriodic1,
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112 | //covPeriodicCO,
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113 | covNoise,
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114 | covScale,
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115 | covSum,
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116 | covProd,
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117 | covMask,
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118 | };
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119 | var likSymbols = new List<ISymbol>()
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120 | {
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121 | likGauss
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122 | };
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123 | var allSymbols = covSymbols.Concat(meanSymbols).Concat(likSymbols);
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124 |
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125 | AddSymbol(configurationStartSymbol);
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126 | // add all symbols to the grammar
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127 | foreach (var s in allSymbols)
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128 | AddSymbol(s);
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129 |
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130 | AddAllowedChildSymbol(StartSymbol, configurationStartSymbol, 0);
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131 |
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132 | foreach (var meanSymbol in meanSymbols) {
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133 | AddAllowedChildSymbol(configurationStartSymbol, meanSymbol, 0);
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134 | }
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135 | foreach (var covSymbol in covSymbols) {
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136 | AddAllowedChildSymbol(configurationStartSymbol, covSymbol, 1);
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137 | }
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138 | foreach (var likSymbol in likSymbols) {
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139 | AddAllowedChildSymbol(configurationStartSymbol, likSymbol, 2);
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140 | }
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141 | //foreach (var meanFunctionSymbol in new ISymbol[] { meanSum, meanProd }) {
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142 | // foreach (var meanSymbol in meanSymbols) {
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143 | // for (int i = 0; i < meanFunctionSymbol.MaximumArity; i++) {
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144 | // AddAllowedChildSymbol(meanFunctionSymbol, meanSymbol, i);
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145 | // }
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146 | // }
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147 | //}
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148 |
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149 | foreach (var covFunctionSymbol in new ISymbol[] { covSum, covProd, covScale }) {
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150 | foreach (var covSymbol in covSymbols) {
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151 | for (int i = 0; i < covFunctionSymbol.MaximumArity; i++) {
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152 | AddAllowedChildSymbol(covFunctionSymbol, covSymbol, i);
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153 | }
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154 | }
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155 | }
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156 |
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157 | // mask
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158 | foreach (var covSymbol in new List<ISymbol>()
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159 | {
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160 | covConst,
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161 | covLin,
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162 | covLinArd,
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163 | covSeArd,
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164 | covSeIso,
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165 | covRQiso,
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166 | covRQard,
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167 | covMatern1,
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168 | covMatern3,
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169 | covMatern5,
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170 | covNN,
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171 | covPoly,
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172 | covPPoly,
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173 | covPeriodic,
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174 | covPeriodic1,
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175 | //covPeriodicCO,
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176 | }) {
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177 | for (int i = 0; i < covMask.MaximumArity; i++) {
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178 | AddAllowedChildSymbol(covMask, covSymbol, i);
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179 | }
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180 | }
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181 | }
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182 |
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183 | private void UpdateSymbolDimension() {
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184 | foreach (var s in Symbols.OfType<IDimensionSymbol>()) {
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185 | s.Dimension = dimension;
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186 | }
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187 | }
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188 | }
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189 | }
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