source: branches/HeuristicLab.EvolutionTracking/HeuristicLab.Problems.DataAnalysis.Symbolic/3.4/Tracking/SchemaDiversification/SchemaEvaluator.cs @ 13876

#region License Information
/* HeuristicLab
 * Copyright (C) 2002-2015 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
 *
 * This file is part of HeuristicLab.
 *
 * HeuristicLab is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * HeuristicLab is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
 */
#endregion

using System;
using System.Collections.Generic;
using System.Linq;
using System.Threading.Tasks;
using HeuristicLab.Common;
using HeuristicLab.Core;
using HeuristicLab.Data;
using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
using HeuristicLab.EvolutionTracking;
using HeuristicLab.Optimization;
using HeuristicLab.Parameters;
using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
using HeuristicLab.Random;

namespace HeuristicLab.Problems.DataAnalysis.Symbolic {
  [Item("SchemaEvaluator", "An operator that builds schemas based on the heredity relationship in the genealogy graph.")]
  [StorableClass]
  public class SchemaEvaluator : EvolutionTrackingOperator<ISymbolicExpressionTree> {
    #region parameter names
    private const string MinimumSchemaFrequencyParameterName = "MinimumSchemaFrequency";
    private const string MinimumPhenotypicSimilarityParameterName = "MinimumPhenotypicSimilarity";
    private const string ReplacementRatioParameterName = "ReplacementRatio";
    private const string SchemaParameterName = "Schema";
    private const string PopulationSizeParameterName = "PopulationSize";
    private const string RandomParameterName = "Random";
    private const string EvaluatorParameterName = "Evaluator";
    private const string ProblemDataParameterName = "ProblemData";
    private const string InterpreterParameterName = "SymbolicExpressionTreeInterpreter";
    private const string EstimationLimitsParameterName = "EstimationLimits";
    private const string ApplyLinearScalingParameterName = "ApplyLinearScaling";
    private const string MutatorParameterName = "Mutator";
    private const string CrossoverParameterName = "Crossover";
    private const string RandomReplacementParameterName = "RandomReplacement";
    private const string NumberOfChangedTreesParameterName = "NumberOfChangedTrees";
    private const string ExecuteInParallelParameterName = "ExecuteInParallel";
    private const string MaxDegreeOfParalellismParameterName = "MaxDegreeOfParallelism";
    private const string ExclusiveMatchingParameterName = "ExclusiveMatching";
    private const string UseAdaptiveReplacementRatioParameterName = "UseAdaptiveReplacementRatio";
    private const string StrictSchemaMatchingParameterName = "StrictSchemaMatching";
    #endregion

    #region parameters
    public ILookupParameter<BoolValue> UseAdaptiveReplacementRatioParameter {
      get { return (ILookupParameter<BoolValue>)Parameters[UseAdaptiveReplacementRatioParameterName]; }
    }
    public ILookupParameter<BoolValue> ExclusiveMatchingParameter {
      get { return (ILookupParameter<BoolValue>)Parameters[ExclusiveMatchingParameterName]; }
    }
    public ILookupParameter<BoolValue> ExecuteInParallelParameter {
      get { return (ILookupParameter<BoolValue>)Parameters[ExecuteInParallelParameterName]; }
    }
    public ILookupParameter<IntValue> MaxDegreeOfParallelismParameter {
      get { return (ILookupParameter<IntValue>)Parameters[MaxDegreeOfParalellismParameterName]; }
    }
    public ILookupParameter<ISymbolicDataAnalysisSingleObjectiveEvaluator<IRegressionProblemData>> EvaluatorParameter {
      get { return (ILookupParameter<ISymbolicDataAnalysisSingleObjectiveEvaluator<IRegressionProblemData>>)Parameters[EvaluatorParameterName]; }
    }
    public ILookupParameter<IRegressionProblemData> ProblemDataParameter {
      get { return (ILookupParameter<IRegressionProblemData>)Parameters[ProblemDataParameterName]; }
    }
    public ILookupParameter<ISymbolicDataAnalysisExpressionTreeInterpreter> InterpreterParameter {
      get { return (ILookupParameter<ISymbolicDataAnalysisExpressionTreeInterpreter>)Parameters[InterpreterParameterName]; }
    }
    public ILookupParameter<DoubleLimit> EstimationLimitsParameter {
      get { return (ILookupParameter<DoubleLimit>)Parameters[EstimationLimitsParameterName]; }
    }
    public ILookupParameter<BoolValue> ApplyLinearScalingParameter {
      get { return (ILookupParameter<BoolValue>)Parameters[ApplyLinearScalingParameterName]; }
    }
    public ILookupParameter<BoolValue> RandomReplacementParameter {
      get { return (ILookupParameter<BoolValue>)Parameters[RandomReplacementParameterName]; }
    }
    public ILookupParameter<ISymbolicExpressionTreeManipulator> MutatorParameter {
      get { return (ILookupParameter<ISymbolicExpressionTreeManipulator>)Parameters[MutatorParameterName]; }
    }
    public ILookupParameter<ISymbolicExpressionTreeCrossover> CrossoverParameter {
      get { return (ILookupParameter<ISymbolicExpressionTreeCrossover>)Parameters[CrossoverParameterName]; }
    }
    public ILookupParameter<IRandom> RandomParameter {
      get { return (ILookupParameter<IRandom>)Parameters[RandomParameterName]; }
    }
    public ILookupParameter<IntValue> PopulationSizeParameter {
      get { return (ILookupParameter<IntValue>)Parameters[PopulationSizeParameterName]; }
    }
    public ILookupParameter<ISymbolicExpressionTree> SchemaParameter {
      get { return (ILookupParameter<ISymbolicExpressionTree>)Parameters[SchemaParameterName]; }
    }
    public ILookupParameter<PercentValue> MinimumSchemaFrequencyParameter {
      get { return (ILookupParameter<PercentValue>)Parameters[MinimumSchemaFrequencyParameterName]; }
    }
    public ILookupParameter<PercentValue> ReplacementRatioParameter {
      get { return (ILookupParameter<PercentValue>)Parameters[ReplacementRatioParameterName]; }
    }
    public ILookupParameter<PercentValue> MinimumPhenotypicSimilarityParameter {
      get { return (ILookupParameter<PercentValue>)Parameters[MinimumPhenotypicSimilarityParameterName]; }
    }
    public LookupParameter<IntValue> NumberOfChangedTreesParameter {
      get { return (LookupParameter<IntValue>)Parameters[NumberOfChangedTreesParameterName]; }
    }
    public LookupParameter<BoolValue> StrictSchemaMatchingParameter {
      get { return (LookupParameter<BoolValue>)Parameters[StrictSchemaMatchingParameterName]; }
    }
    #endregion

    #region parameter properties
    public PercentValue MinimumSchemaFrequency { get { return MinimumSchemaFrequencyParameter.ActualValue; } }
    public PercentValue ReplacementRatio { get { return ReplacementRatioParameter.ActualValue; } }
    public PercentValue MinimumPhenotypicSimilarity { get { return MinimumPhenotypicSimilarityParameter.ActualValue; } }
    public BoolValue RandomReplacement { get { return RandomReplacementParameter.ActualValue; } }
    public IntValue NumberOfChangedTrees { get { return NumberOfChangedTreesParameter.ActualValue; } }
    #endregion

    private QueryMatch qm;

    [Storable]
    private SymbolicExpressionTreePhenotypicSimilarityCalculator calculator;

    [Storable]
    public string ReplacementRule { get; set; }

    [Storable]
    private ISymbolicExpressionTreeNodeEqualityComparer comparer;

    [Storable]
    public ISymbolicExpressionTree Schema { get; set; }

    [Storable]
    private readonly UpdateQualityOperator updateQualityOperator;

    [StorableHook(HookType.AfterDeserialization)]
    private void AfterDeserialization() {
      if (!Parameters.ContainsKey(StrictSchemaMatchingParameterName))
        Parameters.Add(new LookupParameter<BoolValue>(StrictSchemaMatchingParameterName));

      if (calculator == null)
        calculator = new SymbolicExpressionTreePhenotypicSimilarityCalculator();

      if (comparer == null)
        comparer = new SymbolicExpressionTreeNodeEqualityComparer { MatchVariableNames = true, MatchVariableWeights = true, MatchConstantValues = false };

      qm = new QueryMatch(comparer) { MatchParents = true };
    }

    public SchemaEvaluator() {
      calculator = new SymbolicExpressionTreePhenotypicSimilarityCalculator();
      comparer = new SymbolicExpressionTreeNodeEqualityComparer { MatchVariableNames = true, MatchVariableWeights = true, MatchConstantValues = false };
      qm = new QueryMatch(comparer) { MatchParents = true };
      updateQualityOperator = new UpdateQualityOperator();
      #region add parameters
      Parameters.Add(new LookupParameter<ISymbolicExpressionTree>(SchemaParameterName, "The current schema to be evaluated"));
      Parameters.Add(new LookupParameter<PercentValue>(MinimumSchemaFrequencyParameterName));
      Parameters.Add(new LookupParameter<PercentValue>(ReplacementRatioParameterName));
      Parameters.Add(new LookupParameter<PercentValue>(MinimumPhenotypicSimilarityParameterName));
      Parameters.Add(new LookupParameter<ISymbolicExpressionTree>(PopulationSizeParameterName));
      Parameters.Add(new LookupParameter<IRandom>(RandomParameterName));
      Parameters.Add(new LookupParameter<ISymbolicDataAnalysisSingleObjectiveEvaluator<IRegressionProblemData>>(EvaluatorParameterName));
      Parameters.Add(new LookupParameter<IRegressionProblemData>(ProblemDataParameterName));
      Parameters.Add(new LookupParameter<ISymbolicDataAnalysisExpressionTreeInterpreter>(InterpreterParameterName));
      Parameters.Add(new LookupParameter<DoubleLimit>(EstimationLimitsParameterName));
      Parameters.Add(new LookupParameter<BoolValue>(ApplyLinearScalingParameterName));
      Parameters.Add(new LookupParameter<BoolValue>(StrictSchemaMatchingParameterName));
      Parameters.Add(new LookupParameter<ISymbolicExpressionTreeManipulator>(MutatorParameterName));
      Parameters.Add(new LookupParameter<ISymbolicExpressionTreeCrossover>(CrossoverParameterName));
      Parameters.Add(new LookupParameter<BoolValue>(RandomReplacementParameterName));
      Parameters.Add(new LookupParameter<IntValue>(NumberOfChangedTreesParameterName));
      Parameters.Add(new LookupParameter<BoolValue>(ExecuteInParallelParameterName));
      Parameters.Add(new LookupParameter<IntValue>(MaxDegreeOfParalellismParameterName));
      Parameters.Add(new LookupParameter<BoolValue>(ExclusiveMatchingParameterName));
      Parameters.Add(new LookupParameter<BoolValue>(UseAdaptiveReplacementRatioParameterName));
      #endregion
    }

    [StorableConstructor]
    protected SchemaEvaluator(bool deserializing) : base(deserializing) { }

    protected SchemaEvaluator(SchemaEvaluator original, Cloner cloner) : base(original, cloner) {
      calculator = cloner.Clone(original.calculator);
      comparer = cloner.Clone(original.comparer);
      qm = new QueryMatch(comparer) { MatchParents = true };
      updateQualityOperator = new UpdateQualityOperator();
      Schema = original.Schema;
    }

    public override IDeepCloneable Clone(Cloner cloner) {
      return new SchemaEvaluator(this, cloner);
    }

    public override IOperation Apply() {
      var strictSchemaMatching = StrictSchemaMatchingParameter.ActualValue.Value;
      if (strictSchemaMatching) {
        comparer.MatchVariableWeights = true;
        comparer.MatchConstantValues = true;
      } else {
        comparer.MatchVariableWeights = false;
        comparer.MatchConstantValues = false;
      }

      var individuals = ExecutionContext.Scope.SubScopes; // the scopes represent the individuals
      var trees = individuals.Select(x => (ISymbolicExpressionTree)x.Variables["SymbolicExpressionTree"].Value).ToList();

      var random = RandomParameter.ActualValue;
      var mutator = MutatorParameter.ActualValue;

      var s = Schema;
      var sRoot = s.Root.GetSubtree(0).GetSubtree(0);
      int countThreshold = (int)Math.Max(2, Math.Round(MinimumSchemaFrequency.Value * individuals.Count));

      // first apply the length and root equality checks in order to filter the individuals
      var exclusiveMatching = ExclusiveMatchingParameter.ActualValue.Value;
      var filtered = new List<int>();
      for (int i = 0; i < individuals.Count; ++i) {
        if (exclusiveMatching && individuals[i].Variables.ContainsKey("AlreadyMatched")) continue;
        var t = trees[i];
        var tRoot = t.Root.GetSubtree(0).GetSubtree(0);
        if (t.Length < s.Length || !qm.Comparer.Equals(tRoot, sRoot)) continue;
        filtered.Add(i);
      }

      // if we don't have enough filtered individuals, then we are done
      // if the schema exceeds the minimum frequency, it gets processed further
      if (filtered.Count < countThreshold) {
        return base.Apply();
      }

      // check if the filtered individuals match the schema
      var sNodes = QueryMatch.InitializePostOrder(sRoot);
      var matchingIndividuals = new ScopeList();
      bool executeInParallel = ExecuteInParallelParameter.ActualValue.Value;
      int maxDegreeOfParallelism = MaxDegreeOfParallelismParameter.ActualValue.Value;

      if (executeInParallel) {
        var matching = new bool[filtered.Count];

        Parallel.For(0, filtered.Count, new ParallelOptions { MaxDegreeOfParallelism = maxDegreeOfParallelism },
          i => {
            var index = filtered[i];
            var t = trees[index];
            var tNodes = QueryMatch.InitializePostOrder(t.Root.GetSubtree(0).GetSubtree(0));
            if (qm.Match(tNodes, sNodes)) {
              matching[i] = true;
            }
          });

        matchingIndividuals.AddRange(filtered.Where((x, i) => matching[i]).Select(x => individuals[x]));
      } else {
        for (int i = 0; i < filtered.Count; ++i) {
          // break early if it becomes impossible to reach the minimum threshold
          if (matchingIndividuals.Count + filtered.Count - i < countThreshold)
            break;

          var index = filtered[i];
          var tRoot = trees[index].Root.GetSubtree(0).GetSubtree(0);
          var tNodes = QueryMatch.InitializePostOrder(tRoot);
          if (qm.Match(tNodes, sNodes))
            matchingIndividuals.Add(individuals[index]);
        }
      }

      if (matchingIndividuals.Count < countThreshold) {
        return base.Apply();
      }

      var similarity = CalculateSimilarity(matchingIndividuals, calculator, executeInParallel, maxDegreeOfParallelism);
      if (similarity < MinimumPhenotypicSimilarity.Value) {
        return base.Apply();
      }

      double replacementRatio;
      var adaptiveReplacementRatio = UseAdaptiveReplacementRatioParameter.ActualValue.Value;

      if (adaptiveReplacementRatio) {
        var r = (double)matchingIndividuals.Count / individuals.Count;
        replacementRatio = CalculateReplacementRatio(r);
      } else {
        replacementRatio = ReplacementRatio.Value;
      }

      int n = (int)Math.Floor(matchingIndividuals.Count * replacementRatio);
      var individualsToReplace = RandomReplacement.Value ? matchingIndividuals.SampleRandomWithoutRepetition(random, n).ToList()
                                                         : matchingIndividuals.OrderBy(x => (DoubleValue)x.Variables["Quality"].Value).Take(n).ToList();
      var mutationOc = new OperationCollection { Parallel = false }; // cannot be parallel due to the before/after operators which insert vertices in the genealogy graph
      var updateEstimatedValues = new OperationCollection { Parallel = true }; // evaluation should be done in parallel when possible
      foreach (var ind in individualsToReplace) {
        var mutatorOp = ExecutionContext.CreateChildOperation(mutator, ind);
        var updateOp = ExecutionContext.CreateChildOperation(updateQualityOperator, ind);
        mutationOc.Add(mutatorOp);
        updateEstimatedValues.Add(updateOp);
        if (exclusiveMatching)
          ind.Variables.Add(new Core.Variable("AlreadyMatched"));
      }

      NumberOfChangedTrees.Value += individualsToReplace.Count; // a lock is not necessary here because the SchemaEvaluators cannot be executed in parallel

      return new OperationCollection(mutationOc, updateEstimatedValues, base.Apply());
    }

    private double CalculateReplacementRatio(double r) {
      switch (ReplacementRule) {
        case "f(x) = x": {
            return r;
          }
        case "f(x) = tanh(x)": {
            return Math.Tanh(r);
          }
        case "f(x) = tanh(2x)": {
            return Math.Tanh(2 * r);
          }
        case "f(x) = tanh(3x)": {
            return Math.Tanh(3 * r);
          }
        case "f(x) = tanh(4x)": {
            return Math.Tanh(4 * r);
          }
        case "f(x) = 1-sqrt(1-x)": {
            return 1 - Math.Sqrt(1 - r);
          }
        default:
          throw new ArgumentException("Unknown replacement rule");
      }
    }

    public static double CalculateSimilarity(ScopeList individuals, ISolutionSimilarityCalculator calculator, bool parallel = false, int nThreads = -1) {
      double similarity = 0;
      int count = individuals.Count;
      if (count < 2) return double.NaN;
      if (parallel) {
        var parallelOptions = new ParallelOptions { MaxDegreeOfParallelism = nThreads };
        var simArray = new double[count - 1];
        Parallel.For(0, count - 1, parallelOptions, i => {
          double innerSim = 0;
          for (int j = i + 1; j < count; ++j) {
            innerSim += calculator.CalculateSolutionSimilarity(individuals[i], individuals[j]);
          }
          simArray[i] = innerSim;
        });
        similarity = simArray.Sum();
      } else {
        for (int i = 0; i < count - 1; ++i) {
          for (int j = i + 1; j < count; ++j) {
            similarity += calculator.CalculateSolutionSimilarity(individuals[i], individuals[j]);
          }
        }
      }
      return similarity / (count * (count - 1) / 2.0);
    }
  }
}