1 | #region License Information
|
---|
2 | /* HeuristicLab
|
---|
3 | * Copyright (C) 2002-2014 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
|
---|
4 | *
|
---|
5 | * This file is part of HeuristicLab.
|
---|
6 | *
|
---|
7 | * HeuristicLab is free software: you can redistribute it and/or modify
|
---|
8 | * it under the terms of the GNU General Public License as published by
|
---|
9 | * the Free Software Foundation, either version 3 of the License, or
|
---|
10 | * (at your option) any later version.
|
---|
11 | *
|
---|
12 | * HeuristicLab is distributed in the hope that it will be useful,
|
---|
13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
|
---|
14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
---|
15 | * GNU General Public License for more details.
|
---|
16 | *
|
---|
17 | * You should have received a copy of the GNU General Public License
|
---|
18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
|
---|
19 | */
|
---|
20 | #endregion
|
---|
21 |
|
---|
22 | using HeuristicLab.Common;
|
---|
23 | using HeuristicLab.Core;
|
---|
24 | using HeuristicLab.Data;
|
---|
25 | using HeuristicLab.Optimization.Operators;
|
---|
26 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
|
---|
27 |
|
---|
28 | namespace HeuristicLab.Problems.DataAnalysis.Symbolic {
|
---|
29 | [Item("PhenotypicSimilarityCalculator", "An operator that calculates the similarity betweeon two trees based on the correlation of their outputs.")]
|
---|
30 | [StorableClass]
|
---|
31 | public class PhenotypicSimilarityCalculator : SingleObjectiveSolutionSimilarityCalculator {
|
---|
32 | public PhenotypicSimilarityCalculator(PhenotypicSimilarityCalculator original, Cloner cloner)
|
---|
33 | : base(original, cloner) {
|
---|
34 | }
|
---|
35 |
|
---|
36 | public PhenotypicSimilarityCalculator() { }
|
---|
37 |
|
---|
38 | [StorableConstructor]
|
---|
39 | protected PhenotypicSimilarityCalculator(bool deserializing) : base(deserializing) { }
|
---|
40 |
|
---|
41 | public override IDeepCloneable Clone(Cloner cloner) {
|
---|
42 | return new PhenotypicSimilarityCalculator(this, cloner);
|
---|
43 | }
|
---|
44 |
|
---|
45 | public override double CalculateSolutionSimilarity(IScope leftSolution, IScope rightSolution) {
|
---|
46 | var leftValues = (DoubleArray)leftSolution.Variables["EstimatedValues"].Value;
|
---|
47 | var rightValues = (DoubleArray)rightSolution.Variables["EstimatedValues"].Value;
|
---|
48 | OnlineCalculatorError error;
|
---|
49 | var r2 = OnlinePearsonsRSquaredCalculator.Calculate(leftValues, rightValues, out error);
|
---|
50 |
|
---|
51 | if (r2 > 1.0)
|
---|
52 | r2 = 1.0; // sometimes due to fp errors it can happen that the r2 is over 1 (like 1.0000000009)
|
---|
53 |
|
---|
54 | return error != OnlineCalculatorError.None ? 0 : r2;
|
---|
55 | }
|
---|
56 | }
|
---|
57 | }
|
---|