[3253] | 1 | #region License Information
|
---|
| 2 | /* HeuristicLab
|
---|
| 3 | * Copyright (C) 2002-2010 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
|
---|
| 4 | *
|
---|
| 5 | * This file is part of HeuristicLab.
|
---|
| 6 | *
|
---|
| 7 | * HeuristicLab is free software: you can redistribute it and/or modify
|
---|
| 8 | * it under the terms of the GNU General Public License as published by
|
---|
| 9 | * the Free Software Foundation, either version 3 of the License, or
|
---|
| 10 | * (at your option) any later version.
|
---|
| 11 | *
|
---|
| 12 | * HeuristicLab is distributed in the hope that it will be useful,
|
---|
| 13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
|
---|
| 14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
---|
| 15 | * GNU General Public License for more details.
|
---|
| 16 | *
|
---|
| 17 | * You should have received a copy of the GNU General Public License
|
---|
| 18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
|
---|
| 19 | */
|
---|
| 20 | #endregion
|
---|
| 21 |
|
---|
| 22 | using System;
|
---|
[4068] | 23 | using System.Collections.Generic;
|
---|
[5051] | 24 | using System.Linq;
|
---|
[4722] | 25 | using HeuristicLab.Common;
|
---|
[3253] | 26 | using HeuristicLab.Core;
|
---|
| 27 | using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
|
---|
[4068] | 28 | using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Compiler;
|
---|
[3462] | 29 | using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding.Symbols;
|
---|
[4068] | 30 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
|
---|
[3373] | 31 | using HeuristicLab.Problems.DataAnalysis.Symbolic.Symbols;
|
---|
[3253] | 32 |
|
---|
[3373] | 33 | namespace HeuristicLab.Problems.DataAnalysis.Symbolic {
|
---|
[3253] | 34 | [StorableClass]
|
---|
[3462] | 35 | [Item("SimpleArithmeticExpressionInterpreter", "Interpreter for arithmetic symbolic expression trees including function calls.")]
|
---|
[3491] | 36 | // not thread safe!
|
---|
[4722] | 37 | public sealed class SimpleArithmeticExpressionInterpreter : NamedItem, ISymbolicExpressionTreeInterpreter {
|
---|
[3462] | 38 | private class OpCodes {
|
---|
| 39 | public const byte Add = 1;
|
---|
| 40 | public const byte Sub = 2;
|
---|
| 41 | public const byte Mul = 3;
|
---|
| 42 | public const byte Div = 4;
|
---|
[3841] | 43 |
|
---|
| 44 | public const byte Sin = 5;
|
---|
| 45 | public const byte Cos = 6;
|
---|
| 46 | public const byte Tan = 7;
|
---|
| 47 |
|
---|
| 48 | public const byte Log = 8;
|
---|
| 49 | public const byte Exp = 9;
|
---|
| 50 |
|
---|
| 51 | public const byte IfThenElse = 10;
|
---|
| 52 |
|
---|
| 53 | public const byte GT = 11;
|
---|
| 54 | public const byte LT = 12;
|
---|
| 55 |
|
---|
| 56 | public const byte AND = 13;
|
---|
| 57 | public const byte OR = 14;
|
---|
| 58 | public const byte NOT = 15;
|
---|
| 59 |
|
---|
| 60 |
|
---|
| 61 | public const byte Average = 16;
|
---|
| 62 |
|
---|
| 63 | public const byte Call = 17;
|
---|
| 64 |
|
---|
| 65 | public const byte Variable = 18;
|
---|
| 66 | public const byte LagVariable = 19;
|
---|
| 67 | public const byte Constant = 20;
|
---|
| 68 | public const byte Arg = 21;
|
---|
[5026] | 69 |
|
---|
| 70 | public const byte TimeLag = 22;
|
---|
[5051] | 71 | public const byte Integral = 23;
|
---|
| 72 | public const byte Derivative = 24;
|
---|
[5060] | 73 |
|
---|
| 74 | public const byte VariableCondition = 25;
|
---|
[3462] | 75 | }
|
---|
| 76 |
|
---|
[3841] | 77 | private Dictionary<Type, byte> symbolToOpcode = new Dictionary<Type, byte>() {
|
---|
| 78 | { typeof(Addition), OpCodes.Add },
|
---|
| 79 | { typeof(Subtraction), OpCodes.Sub },
|
---|
| 80 | { typeof(Multiplication), OpCodes.Mul },
|
---|
| 81 | { typeof(Division), OpCodes.Div },
|
---|
| 82 | { typeof(Sine), OpCodes.Sin },
|
---|
| 83 | { typeof(Cosine), OpCodes.Cos },
|
---|
| 84 | { typeof(Tangent), OpCodes.Tan },
|
---|
| 85 | { typeof(Logarithm), OpCodes.Log },
|
---|
| 86 | { typeof(Exponential), OpCodes.Exp },
|
---|
| 87 | { typeof(IfThenElse), OpCodes.IfThenElse },
|
---|
| 88 | { typeof(GreaterThan), OpCodes.GT },
|
---|
| 89 | { typeof(LessThan), OpCodes.LT },
|
---|
| 90 | { typeof(And), OpCodes.AND },
|
---|
| 91 | { typeof(Or), OpCodes.OR },
|
---|
| 92 | { typeof(Not), OpCodes.NOT},
|
---|
| 93 | { typeof(Average), OpCodes.Average},
|
---|
| 94 | { typeof(InvokeFunction), OpCodes.Call },
|
---|
| 95 | { typeof(HeuristicLab.Problems.DataAnalysis.Symbolic.Symbols.Variable), OpCodes.Variable },
|
---|
| 96 | { typeof(LaggedVariable), OpCodes.LagVariable },
|
---|
| 97 | { typeof(Constant), OpCodes.Constant },
|
---|
| 98 | { typeof(Argument), OpCodes.Arg },
|
---|
[5026] | 99 | { typeof(TimeLag), OpCodes.TimeLag},
|
---|
[5051] | 100 | { typeof(Integral), OpCodes.Integral},
|
---|
[5060] | 101 | { typeof(Derivative), OpCodes.Derivative},
|
---|
| 102 | { typeof(VariableCondition),OpCodes.VariableCondition}
|
---|
[3841] | 103 | };
|
---|
[3491] | 104 | private const int ARGUMENT_STACK_SIZE = 1024;
|
---|
[3513] | 105 |
|
---|
[3257] | 106 | private Dataset dataset;
|
---|
| 107 | private int row;
|
---|
[3294] | 108 | private Instruction[] code;
|
---|
| 109 | private int pc;
|
---|
[4022] | 110 | private double[] argumentStack = new double[ARGUMENT_STACK_SIZE];
|
---|
| 111 | private int argStackPointer;
|
---|
[3462] | 112 |
|
---|
[3545] | 113 | public override bool CanChangeName {
|
---|
| 114 | get { return false; }
|
---|
| 115 | }
|
---|
| 116 | public override bool CanChangeDescription {
|
---|
| 117 | get { return false; }
|
---|
| 118 | }
|
---|
| 119 |
|
---|
[4722] | 120 | [StorableConstructor]
|
---|
| 121 | private SimpleArithmeticExpressionInterpreter(bool deserializing) : base(deserializing) { }
|
---|
| 122 | private SimpleArithmeticExpressionInterpreter(SimpleArithmeticExpressionInterpreter original, Cloner cloner) : base(original, cloner) { }
|
---|
| 123 |
|
---|
| 124 | public override IDeepCloneable Clone(Cloner cloner) {
|
---|
| 125 | return new SimpleArithmeticExpressionInterpreter(this, cloner);
|
---|
| 126 | }
|
---|
| 127 |
|
---|
[3513] | 128 | public SimpleArithmeticExpressionInterpreter()
|
---|
| 129 | : base() {
|
---|
| 130 | }
|
---|
| 131 |
|
---|
[3462] | 132 | public IEnumerable<double> GetSymbolicExpressionTreeValues(SymbolicExpressionTree tree, Dataset dataset, IEnumerable<int> rows) {
|
---|
[3257] | 133 | this.dataset = dataset;
|
---|
[3294] | 134 | var compiler = new SymbolicExpressionTreeCompiler();
|
---|
[3462] | 135 | compiler.AddInstructionPostProcessingHook(PostProcessInstruction);
|
---|
| 136 | code = compiler.Compile(tree, MapSymbolToOpCode);
|
---|
[3253] | 137 | foreach (var row in rows) {
|
---|
[3257] | 138 | this.row = row;
|
---|
[3294] | 139 | pc = 0;
|
---|
[3491] | 140 | argStackPointer = 0;
|
---|
[3513] | 141 | yield return Evaluate();
|
---|
[3253] | 142 | }
|
---|
| 143 | }
|
---|
| 144 |
|
---|
[3462] | 145 | private Instruction PostProcessInstruction(Instruction instr) {
|
---|
| 146 | if (instr.opCode == OpCodes.Variable) {
|
---|
| 147 | var variableTreeNode = instr.dynamicNode as VariableTreeNode;
|
---|
| 148 | instr.iArg0 = (ushort)dataset.GetVariableIndex(variableTreeNode.VariableName);
|
---|
[3841] | 149 | } else if (instr.opCode == OpCodes.LagVariable) {
|
---|
| 150 | var variableTreeNode = instr.dynamicNode as LaggedVariableTreeNode;
|
---|
| 151 | instr.iArg0 = (ushort)dataset.GetVariableIndex(variableTreeNode.VariableName);
|
---|
[5060] | 152 | } else if (instr.opCode == OpCodes.VariableCondition) {
|
---|
| 153 | var variableConditionTreeNode = instr.dynamicNode as VariableConditionTreeNode;
|
---|
| 154 | instr.iArg0 = (ushort)dataset.GetVariableIndex(variableConditionTreeNode.VariableName);
|
---|
[3841] | 155 | }
|
---|
[3462] | 156 | return instr;
|
---|
| 157 | }
|
---|
| 158 |
|
---|
| 159 | private byte MapSymbolToOpCode(SymbolicExpressionTreeNode treeNode) {
|
---|
[3841] | 160 | if (symbolToOpcode.ContainsKey(treeNode.Symbol.GetType()))
|
---|
| 161 | return symbolToOpcode[treeNode.Symbol.GetType()];
|
---|
| 162 | else
|
---|
| 163 | throw new NotSupportedException("Symbol: " + treeNode.Symbol);
|
---|
[3462] | 164 | }
|
---|
| 165 |
|
---|
[4022] | 166 | private double Evaluate() {
|
---|
| 167 | Instruction currentInstr = code[pc++];
|
---|
[3462] | 168 | switch (currentInstr.opCode) {
|
---|
| 169 | case OpCodes.Add: {
|
---|
[3996] | 170 | double s = Evaluate();
|
---|
| 171 | for (int i = 1; i < currentInstr.nArguments; i++) {
|
---|
[3294] | 172 | s += Evaluate();
|
---|
| 173 | }
|
---|
| 174 | return s;
|
---|
| 175 | }
|
---|
[3462] | 176 | case OpCodes.Sub: {
|
---|
[3294] | 177 | double s = Evaluate();
|
---|
| 178 | for (int i = 1; i < currentInstr.nArguments; i++) {
|
---|
| 179 | s -= Evaluate();
|
---|
| 180 | }
|
---|
[3733] | 181 | if (currentInstr.nArguments == 1) s = -s;
|
---|
[3294] | 182 | return s;
|
---|
| 183 | }
|
---|
[3462] | 184 | case OpCodes.Mul: {
|
---|
[3294] | 185 | double p = Evaluate();
|
---|
| 186 | for (int i = 1; i < currentInstr.nArguments; i++) {
|
---|
| 187 | p *= Evaluate();
|
---|
| 188 | }
|
---|
| 189 | return p;
|
---|
| 190 | }
|
---|
[3462] | 191 | case OpCodes.Div: {
|
---|
[3294] | 192 | double p = Evaluate();
|
---|
| 193 | for (int i = 1; i < currentInstr.nArguments; i++) {
|
---|
| 194 | p /= Evaluate();
|
---|
| 195 | }
|
---|
[3733] | 196 | if (currentInstr.nArguments == 1) p = 1.0 / p;
|
---|
[3294] | 197 | return p;
|
---|
| 198 | }
|
---|
[3841] | 199 | case OpCodes.Average: {
|
---|
| 200 | double sum = Evaluate();
|
---|
| 201 | for (int i = 1; i < currentInstr.nArguments; i++) {
|
---|
| 202 | sum += Evaluate();
|
---|
| 203 | }
|
---|
| 204 | return sum / currentInstr.nArguments;
|
---|
| 205 | }
|
---|
| 206 | case OpCodes.Cos: {
|
---|
| 207 | return Math.Cos(Evaluate());
|
---|
| 208 | }
|
---|
| 209 | case OpCodes.Sin: {
|
---|
| 210 | return Math.Sin(Evaluate());
|
---|
| 211 | }
|
---|
| 212 | case OpCodes.Tan: {
|
---|
| 213 | return Math.Tan(Evaluate());
|
---|
| 214 | }
|
---|
| 215 | case OpCodes.Exp: {
|
---|
| 216 | return Math.Exp(Evaluate());
|
---|
| 217 | }
|
---|
| 218 | case OpCodes.Log: {
|
---|
| 219 | return Math.Log(Evaluate());
|
---|
| 220 | }
|
---|
| 221 | case OpCodes.IfThenElse: {
|
---|
| 222 | double condition = Evaluate();
|
---|
| 223 | double result;
|
---|
| 224 | if (condition > 0.0) {
|
---|
| 225 | result = Evaluate(); SkipBakedCode();
|
---|
| 226 | } else {
|
---|
| 227 | SkipBakedCode(); result = Evaluate();
|
---|
| 228 | }
|
---|
| 229 | return result;
|
---|
| 230 | }
|
---|
| 231 | case OpCodes.AND: {
|
---|
| 232 | double result = Evaluate();
|
---|
| 233 | for (int i = 1; i < currentInstr.nArguments; i++) {
|
---|
| 234 | if (result <= 0.0) SkipBakedCode();
|
---|
| 235 | else {
|
---|
| 236 | result = Evaluate();
|
---|
| 237 | }
|
---|
| 238 | }
|
---|
| 239 | return result <= 0.0 ? -1.0 : 1.0;
|
---|
| 240 | }
|
---|
| 241 | case OpCodes.OR: {
|
---|
| 242 | double result = Evaluate();
|
---|
| 243 | for (int i = 1; i < currentInstr.nArguments; i++) {
|
---|
| 244 | if (result > 0.0) SkipBakedCode();
|
---|
| 245 | else {
|
---|
| 246 | result = Evaluate();
|
---|
| 247 | }
|
---|
| 248 | }
|
---|
| 249 | return result > 0.0 ? 1.0 : -1.0;
|
---|
| 250 | }
|
---|
| 251 | case OpCodes.NOT: {
|
---|
| 252 | return -Evaluate();
|
---|
| 253 | }
|
---|
| 254 | case OpCodes.GT: {
|
---|
| 255 | double x = Evaluate();
|
---|
| 256 | double y = Evaluate();
|
---|
| 257 | if (x > y) return 1.0;
|
---|
| 258 | else return -1.0;
|
---|
| 259 | }
|
---|
| 260 | case OpCodes.LT: {
|
---|
| 261 | double x = Evaluate();
|
---|
| 262 | double y = Evaluate();
|
---|
| 263 | if (x < y) return 1.0;
|
---|
| 264 | else return -1.0;
|
---|
| 265 | }
|
---|
[3462] | 266 | case OpCodes.Call: {
|
---|
[3409] | 267 | // evaluate sub-trees
|
---|
[3491] | 268 | // push on argStack in reverse order
|
---|
[3409] | 269 | for (int i = 0; i < currentInstr.nArguments; i++) {
|
---|
[3491] | 270 | argumentStack[argStackPointer + currentInstr.nArguments - i] = Evaluate();
|
---|
[3409] | 271 | }
|
---|
[3747] | 272 | argStackPointer += currentInstr.nArguments;
|
---|
[3491] | 273 |
|
---|
[3409] | 274 | // save the pc
|
---|
| 275 | int nextPc = pc;
|
---|
| 276 | // set pc to start of function
|
---|
| 277 | pc = currentInstr.iArg0;
|
---|
| 278 | // evaluate the function
|
---|
| 279 | double v = Evaluate();
|
---|
[3491] | 280 |
|
---|
| 281 | // decrease the argument stack pointer by the number of arguments pushed
|
---|
| 282 | // to set the argStackPointer back to the original location
|
---|
| 283 | argStackPointer -= currentInstr.nArguments;
|
---|
| 284 |
|
---|
[3409] | 285 | // restore the pc => evaluation will continue at point after my subtrees
|
---|
| 286 | pc = nextPc;
|
---|
| 287 | return v;
|
---|
| 288 | }
|
---|
[3462] | 289 | case OpCodes.Arg: {
|
---|
[3491] | 290 | return argumentStack[argStackPointer - currentInstr.iArg0];
|
---|
[3409] | 291 | }
|
---|
[3462] | 292 | case OpCodes.Variable: {
|
---|
[3373] | 293 | var variableTreeNode = currentInstr.dynamicNode as VariableTreeNode;
|
---|
[3462] | 294 | return dataset[row, currentInstr.iArg0] * variableTreeNode.Weight;
|
---|
| 295 | }
|
---|
[3841] | 296 | case OpCodes.LagVariable: {
|
---|
| 297 | var lagVariableTreeNode = currentInstr.dynamicNode as LaggedVariableTreeNode;
|
---|
| 298 | int actualRow = row + lagVariableTreeNode.Lag;
|
---|
| 299 | if (actualRow < 0 || actualRow >= dataset.Rows) throw new ArgumentException("Out of range access to dataset row: " + row);
|
---|
| 300 | return dataset[actualRow, currentInstr.iArg0] * lagVariableTreeNode.Weight;
|
---|
| 301 | }
|
---|
[3462] | 302 | case OpCodes.Constant: {
|
---|
[3373] | 303 | var constTreeNode = currentInstr.dynamicNode as ConstantTreeNode;
|
---|
[3462] | 304 | return constTreeNode.Value;
|
---|
[3294] | 305 | }
|
---|
[5026] | 306 | case OpCodes.TimeLag: {
|
---|
| 307 | var timeLagTreeNode = (LaggedTreeNode)currentInstr.dynamicNode;
|
---|
[5051] | 308 | if (row + timeLagTreeNode.Lag < 0 || row + timeLagTreeNode.Lag >= dataset.Rows)
|
---|
| 309 | return double.NaN;
|
---|
| 310 |
|
---|
[5026] | 311 | row += timeLagTreeNode.Lag;
|
---|
| 312 | double result = Evaluate();
|
---|
| 313 | row -= timeLagTreeNode.Lag;
|
---|
| 314 | return result;
|
---|
| 315 | }
|
---|
[5051] | 316 | case OpCodes.Integral: {
|
---|
| 317 | int nextPc = pc;
|
---|
| 318 | var timeLagTreeNode = (LaggedTreeNode)currentInstr.dynamicNode;
|
---|
| 319 | if (row + timeLagTreeNode.Lag < 0 || row + timeLagTreeNode.Lag >= dataset.Rows)
|
---|
| 320 | return double.NaN;
|
---|
| 321 | double sum = 0.0;
|
---|
| 322 | if (timeLagTreeNode.IterateNodesPrefix().OfType<VariableTreeNode>().Any()) {
|
---|
| 323 | for (int i = 0; i < Math.Abs(timeLagTreeNode.Lag); i++) {
|
---|
| 324 | row += Math.Sign(timeLagTreeNode.Lag);
|
---|
| 325 | sum += Evaluate();
|
---|
| 326 | pc = nextPc;
|
---|
| 327 | }
|
---|
| 328 | row -= timeLagTreeNode.Lag;
|
---|
| 329 | sum += Evaluate();
|
---|
| 330 | } else sum = Math.Abs(timeLagTreeNode.Lag) * Evaluate();
|
---|
| 331 | return sum;
|
---|
| 332 | }
|
---|
| 333 |
|
---|
| 334 | //mkommend: derivate calculation taken from:
|
---|
| 335 | //http://www.holoborodko.com/pavel/numerical-methods/numerical-derivative/smooth-low-noise-differentiators/
|
---|
| 336 | //one sided smooth differentiatior, N = 4
|
---|
| 337 | // y' = 1/8h (f_i + 2f_i-1, -2 f_i-3 - f_i-4)
|
---|
| 338 | case OpCodes.Derivative: {
|
---|
| 339 | if (row - 4 < 0) return double.NaN;
|
---|
| 340 | int nextPc = pc;
|
---|
| 341 | double f_0 = Evaluate(); row--;
|
---|
| 342 | pc = nextPc;
|
---|
| 343 | double f_1 = Evaluate(); row -= 2;
|
---|
| 344 | pc = nextPc;
|
---|
| 345 | double f_3 = Evaluate(); row--;
|
---|
| 346 | pc = nextPc;
|
---|
| 347 | double f_4 = Evaluate();
|
---|
| 348 | row += 4;
|
---|
| 349 |
|
---|
| 350 | return (f_0 + 2 * f_1 - 2 * f_3 - f_4) / 8; // h = 1
|
---|
| 351 | }
|
---|
[5060] | 352 |
|
---|
| 353 | //mkommend: this symbol uses the logistic function f(x) = 1 / (1 + e^(-alpha * x) )
|
---|
| 354 | //to determine the relative amounts of the true and false branch see http://en.wikipedia.org/wiki/Logistic_function
|
---|
| 355 | case OpCodes.VariableCondition: {
|
---|
| 356 | var variableConditionTreeNode = (VariableConditionTreeNode)currentInstr.dynamicNode;
|
---|
| 357 | double variableValue = dataset[row, currentInstr.iArg0];
|
---|
| 358 | double x = variableValue - variableConditionTreeNode.Threshold;
|
---|
| 359 | double p = 1 / (1 + Math.Exp(-variableConditionTreeNode.Slope * x));
|
---|
| 360 |
|
---|
| 361 | double trueBranch = Evaluate();
|
---|
| 362 | double falseBranch = Evaluate();
|
---|
| 363 |
|
---|
| 364 | return trueBranch * p + falseBranch * (1 - p);
|
---|
| 365 | }
|
---|
[3294] | 366 | default: throw new NotSupportedException();
|
---|
[3253] | 367 | }
|
---|
| 368 | }
|
---|
[3841] | 369 |
|
---|
| 370 | // skips a whole branch
|
---|
[4722] | 371 | private void SkipBakedCode() {
|
---|
[3841] | 372 | int i = 1;
|
---|
| 373 | while (i > 0) {
|
---|
| 374 | i += code[pc++].nArguments;
|
---|
| 375 | i--;
|
---|
| 376 | }
|
---|
| 377 | }
|
---|
[3253] | 378 | }
|
---|
| 379 | }
|
---|