source: branches/FitnessLandscapeAnalysis/HeuristicLab.Analysis.FitnessLandscape/Analysis/InformationAnalyzer.cs @ 14427

#region License Information
/* HeuristicLab
 * Copyright (C) 2002-2010 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
 *
 * This file is part of HeuristicLab.
 *
 * HeuristicLab is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * HeuristicLab is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
 */
#endregion

using System;
using System.Linq;
using HeuristicLab.Analysis.FitnessLandscape.DataTables;
using HeuristicLab.Common;
using HeuristicLab.Core;
using HeuristicLab.Data;
using HeuristicLab.Operators;
using HeuristicLab.Optimization.Operators;
using HeuristicLab.Parameters;
using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;

namespace HeuristicLab.Analysis.FitnessLandscape.Analysis {

  [StorableClass]
  public class InformationAnalyzer : AlgorithmOperator, IQualityTrailAnalyzer {
    public bool EnabledByDefault {
      get { return false; }
    }

    #region Parameters
    public LookupParameter<DataTable> QualityTrailParameter {
      get { return (LookupParameter<DataTable>)Parameters["Quality Trail"]; }
    }
    public LookupParameter<InformationStabilityTable> InformationStabilityParameter {
      get { return (LookupParameter<InformationStabilityTable>)Parameters["Information Stability"]; }
    }
    public LookupParameter<InformationAnalysisTable> InformationParameter {
      get { return (LookupParameter<InformationAnalysisTable>)Parameters["Information"]; }
    }
    public LookupParameter<VariableCollection> ResultsParameter {
      get { return (LookupParameter<VariableCollection>)Parameters["Results"]; }
    }
    public ValueLookupParameter<IntValue> NQuantilesParameter {
      get { return (ValueLookupParameter<IntValue>)Parameters["NQuantiles"]; }
    }
    public ValueLookupParameter<IntValue> ShapeSizeParameter {
      get { return (ValueLookupParameter<IntValue>)Parameters["ShapeSize"]; }
    }
    public LookupParameter<DoubleValue> InformationContentValueParameter {
      get { return (LookupParameter<DoubleValue>)Parameters["InformationContentValue"]; }
    }
    public LookupParameter<DoubleValue> PartialInformationContentValueParameter {
      get { return (LookupParameter<DoubleValue>)Parameters["PartialInformationContentValue"]; }
    }
    public LookupParameter<DoubleValue> DensityBasinInformationValueParameter {
      get { return (LookupParameter<DoubleValue>)Parameters["DensityBasinInformationValue"]; }
    }
    public LookupParameter<DoubleValue> TotalEntropyValueParameter {
      get { return (LookupParameter<DoubleValue>)Parameters["TotalEntropyValue"]; }
    }
    public LookupParameter<DoubleValue> InformationStabilityValueParameter {
      get { return (LookupParameter<DoubleValue>)Parameters["InformationStabilityValue"]; }
    }
    public LookupParameter<IntValue> RegularityValueParameter {
      get { return (LookupParameter<IntValue>)Parameters["RegularityValue"]; }
    }
    public LookupParameter<IntValue> DiversityValueParameter {
      get { return (LookupParameter<IntValue>)Parameters["DiversityValue"]; }
    }

    #region Peaks
    public LookupParameter<DoubleValue> PeakInformationContentParameter {
      get { return (LookupParameter<DoubleValue>) Parameters["PeakInformationContent"]; }
    }
    public LookupParameter<DoubleValue> PeakInformationContentQualityDeltaParameter {
      get { return (LookupParameter<DoubleValue>) Parameters["PeakInformationContentQualityDelta"]; }
    }
    public LookupParameter<DoubleValue> PeakDensityBasinInformationParameter {
      get { return (LookupParameter<DoubleValue>) Parameters["PeakDensityBasinInformation"]; }
    }
    public LookupParameter<DoubleValue> PeakDensityBasinInformationQualityDeltaParameter {
      get { return (LookupParameter<DoubleValue>) Parameters["PeakDensityBasinInformationQualityDelta"]; }
    }


    #endregion

    #endregion

    private InformationStabilityTable InformationStability {
      get { return InformationStabilityParameter.ActualValue; }
    }
    private double InformationContentValue {
      set { InformationContentValueParameter.ActualValue = new DoubleValue(value); }
    }
    private double PartialInformationContentValue {
      set { PartialInformationContentValueParameter.ActualValue = new DoubleValue(value); }
    }
    private double DensityBasinInformationValue {
      set { DensityBasinInformationValueParameter.ActualValue = new DoubleValue(value); }
    }
    private double TotalEntropyValue {
      set { TotalEntropyValueParameter.ActualValue = new DoubleValue(value); }
    }
    private double InformationStabilityValue {
      set { InformationStabilityValueParameter.ActualValue = new DoubleValue(value); }
    }

    [StorableConstructor]
    protected InformationAnalyzer(bool deserializing) : base(deserializing) { }
    protected InformationAnalyzer(InformationAnalyzer original, Cloner cloner) : base(original, cloner) { }

    public InformationAnalyzer() {
      Parameters.Add(new LookupParameter<DataTable>("Quality Trail", "The qualities of the solutions"));
      Parameters.Add(new LookupParameter<InformationStabilityTable>("Information Stability", "Information stability development over time"));
      Parameters.Add(new LookupParameter<InformationAnalysisTable>("Information", "A data table that information theoretic fitness landscape characteristics"));
      Parameters.Add(new LookupParameter<VariableCollection>("Results", "The collection of all results of this algorithm"));

      Parameters.Add(new ValueLookupParameter<IntValue>("NQuantiles", "The number of delta quantiles to display", new IntValue(20)));
      Parameters.Add(new ValueLookupParameter<IntValue>("ShapeSize", "The number of slopes to consider as shapes.", new IntValue(2)));

      Parameters.Add(new LookupParameter<DoubleValue>("InformationContentValue", "The information content H(0) at eps = 0"));
      Parameters.Add(new LookupParameter<DoubleValue>("PartialInformationContentValue", "Partial information content M(0) at eps = 0"));
      Parameters.Add(new LookupParameter<DoubleValue>("DensityBasinInformationValue", "Density Basin Information h(0) at eps = 0"));
      Parameters.Add(new LookupParameter<DoubleValue>("TotalEntropyValue", "The overall disorder in the trajectory"));
      Parameters.Add(new LookupParameter<DoubleValue>("InformationStabilityValue", "Information Stability Value"));
      Parameters.Add(new LookupParameter<IntValue>("RegularityValue", "The number of different quality differences"));
      Parameters.Add(new LookupParameter<IntValue>("DiversityValue", "The number of different quality values"));
      Parameters.Add(new LookupParameter<DoubleValue>("PeakInformationContent", "Maximum information content at any quality delta."));
      Parameters.Add(new LookupParameter<DoubleValue>("PeakInformationContentQualityDelta", "Quality delta with maximum information content."));
      Parameters.Add(new LookupParameter<DoubleValue>("PeakDensityBasinInformation", "Maximum density basin information at any quality delta."));
      Parameters.Add(new LookupParameter<DoubleValue>("PeakDensityBasinInformationQualityDelta", "Quality delta with maximum density basin information."));

      var resultsCollector = new ResultsCollector();
      resultsCollector.CollectedValues.Add(new LookupParameter<DataTable>(InformationParameter.Name));
      resultsCollector.CollectedValues.Add(new LookupParameter<DataTable>(InformationStabilityParameter.Name));
      resultsCollector.CollectedValues.Add(new LookupParameter<DoubleValue>(InformationContentValueParameter.Name));
      resultsCollector.CollectedValues.Add(new LookupParameter<DoubleValue>(PartialInformationContentValueParameter.Name));
      resultsCollector.CollectedValues.Add(new LookupParameter<DoubleValue>(DensityBasinInformationValueParameter.Name));
      resultsCollector.CollectedValues.Add(new LookupParameter<DoubleValue>(TotalEntropyValueParameter.Name));
      resultsCollector.CollectedValues.Add(new LookupParameter<DoubleValue>(InformationStabilityValueParameter.Name));
      resultsCollector.CollectedValues.Add(new LookupParameter<IntValue>(RegularityValueParameter.Name));
      resultsCollector.CollectedValues.Add(new LookupParameter<IntValue>(DiversityValueParameter.Name));
      resultsCollector.CollectedValues.Add(new LookupParameter<DoubleValue>(PeakInformationContentParameter.Name));
      resultsCollector.CollectedValues.Add(new LookupParameter<DoubleValue>(PeakInformationContentQualityDeltaParameter.Name));
      resultsCollector.CollectedValues.Add(new LookupParameter<DoubleValue>(PeakDensityBasinInformationParameter.Name));
      resultsCollector.CollectedValues.Add(new LookupParameter<DoubleValue>(PeakDensityBasinInformationQualityDeltaParameter.Name));

      OperatorGraph.InitialOperator = resultsCollector;
      resultsCollector.Successor = null;
    }

    public override IDeepCloneable Clone(Cloner cloner) {
      return new InformationAnalyzer(this, cloner);
    }

    public override IOperation Apply() {
      DataTable qualityTrail = QualityTrailParameter.ActualValue;
      if (qualityTrail != null && qualityTrail.Rows.Count > 0) {
        EnsureExistsInformationStabilityTable();
        EnsureExistsInformationTable();
        AnalyseInformation();
      }
      return base.Apply();
    }

    private void AnalyseInformation() {
      int nQuantiles = NQuantilesParameter.ActualValue.Value;
      int shapeSize = ShapeSizeParameter.ActualValue.Value;
      var qualities = QualityTrailParameter.ActualValue.Rows.First().Values.ToList();
      if (qualities.Count > 2) {
        InformationAnalysisTable informationTable = InformationParameter.ActualValue;
        var informationContent = informationTable.Rows["Information Content"].Values;
        var partialInformationContent = informationTable.Rows["Partial Information Content"].Values;
        var densityBasinInformation = informationTable.Rows["Density Basin Information"].Values;
        var totalEntropy = informationTable.Rows["Total Entropy"].Values;
        var qualityDelta = informationTable.Rows["Quality Delta"].Values;
        var analysis = new InformationAnalysis(qualities, nQuantiles, shapeSize);
        InformationStability.Rows["Regularity"].Values.Add(analysis.Regularity);
        InformationStability.Rows["Diversity"].Values.Add(analysis.Diversity);
        InformationStability.Rows["Relative Regularity"].Values.Add(1.0*analysis.Regularity/qualities.Count);
        InformationStability.Rows["Relative Diversity"].Values.Add(1.0*analysis.Diversity/qualities.Count);
        InformationStability.Rows["Information Stability"].Values.Add(analysis.InformationStability);
        informationContent.Clear();
        informationContent.AddRange(analysis.InformationContent);
        partialInformationContent.Clear();
        partialInformationContent.AddRange(analysis.PartialInformationContent);
        densityBasinInformation.Clear();
        densityBasinInformation.AddRange(analysis.DensityBasinInformation);
        totalEntropy.Clear();
        totalEntropy.AddRange(analysis.TotalEntropy);
        qualityDelta.Clear();
        qualityDelta.AddRange(analysis.QualityDelta);
        InformationContentValue = analysis.InformationContent.FirstOrDefault();
        PartialInformationContentValue = analysis.PartialInformationContent.FirstOrDefault();
        DensityBasinInformationValue = analysis.DensityBasinInformation.FirstOrDefault();
        InformationStabilityValue = analysis.InformationStability;
        RegularityValueParameter.ActualValue = new IntValue(analysis.Regularity);
        DiversityValueParameter.ActualValue = new IntValue(analysis.Diversity);
        if (analysis.PeakInformationContent != null) {
          PeakInformationContentParameter.ActualValue = new DoubleValue(analysis.PeakInformationContent.Value);
          PeakInformationContentQualityDeltaParameter.ActualValue = new DoubleValue(analysis.PeakInformationContent.QualityDelta);
        }
        if (analysis.PeakDensityBasinInformation != null) {
          PeakDensityBasinInformationParameter.ActualValue = new DoubleValue(analysis.PeakDensityBasinInformation.Value);
          PeakDensityBasinInformationQualityDeltaParameter.ActualValue = new DoubleValue(analysis.PeakDensityBasinInformation.QualityDelta);
        }
      }
    }

    private void EnsureExistsInformationTable() {
      InformationAnalysisTable information = InformationParameter.ActualValue;
      if (information == null) {
        information = new InformationAnalysisTable("Information");
        information.Rows.Add(new DataRow("Information Content"));
        information.Rows.Add(new DataRow("Partial Information Content"));
        information.Rows.Add(new DataRow("Density Basin Information"));
        information.Rows.Add(new DataRow("Total Entropy"));
        information.Rows.Add(new DataRow("Quality Delta") {VisualProperties = {SecondYAxis = true}});
        InformationParameter.ActualValue = information;
      }
    }

    private void EnsureExistsInformationStabilityTable() {
      InformationStabilityTable informationStability = InformationStabilityParameter.ActualValue;
      if (informationStability == null) {
        informationStability = new InformationStabilityTable("Information Stability");
        informationStability.Rows.Add(new DataRow("Information Stability"));
        informationStability.Rows.Add(new DataRow("Relative Regularity"));
        informationStability.Rows.Add(new DataRow("Relative Diversity"));
        informationStability.Rows.Add(new DataRow("Regularity") {VisualProperties = {SecondYAxis = true}});
        informationStability.Rows.Add(new DataRow("Diversity") {VisualProperties = {SecondYAxis = true}});
        InformationStabilityParameter.ActualValue = informationStability;
      }
    }
  }
}