1 | #region License Information
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2 | /* HeuristicLab
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3 | * Copyright (C) 2002-2016 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
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4 | *
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5 | * This file is part of HeuristicLab.
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6 | *
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7 | * HeuristicLab is free software: you can redistribute it and/or modify
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8 | * it under the terms of the GNU General Public License as published by
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9 | * the Free Software Foundation, either version 3 of the License, or
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10 | * (at your option) any later version.
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11 | *
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12 | * HeuristicLab is distributed in the hope that it will be useful,
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13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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15 | * GNU General Public License for more details.
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16 | *
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17 | * You should have received a copy of the GNU General Public License
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18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
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19 | */
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20 | #endregion
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21 |
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22 | using System;
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23 | using System.Collections;
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24 | using System.Collections.Generic;
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25 | using System.Globalization;
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26 | using System.Linq;
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27 | using HeuristicLab.Common;
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28 | using HeuristicLab.Core;
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29 | using HeuristicLab.Data;
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30 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
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31 | using HeuristicLab.Problems.DataAnalysis;
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32 |
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33 | namespace HeuristicLab.DataPreprocessing {
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34 | [Item("PreprocessingData", "Represents data used for preprocessing.")]
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35 | [StorableClass]
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36 | public class PreprocessingData : NamedItem, IPreprocessingData {
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37 |
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38 | [Storable] private List<PreprocessingDataColumn> dataColumns;
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39 |
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40 | public IList<PreprocessingDataColumn> DataColumns {
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41 | get { return dataColumns; }
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42 | }
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43 |
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44 |
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45 | #region Constructor, Cloning & Persistence
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46 | public PreprocessingData(IDataAnalysisProblemData problemData)
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47 | : base() {
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48 | Name = "Preprocessing Data";
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49 |
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50 | dataColumns = new List<PreprocessingDataColumn>();
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51 | Transformations = new List<ITransformation>();
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52 | selection = new Dictionary<int, IList<int>>();
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53 |
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54 | Import(problemData);
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55 |
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56 | RegisterEventHandler();
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57 | }
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58 |
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59 | protected PreprocessingData(PreprocessingData original, Cloner cloner)
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60 | : base(original, cloner) {
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61 | dataColumns = new List<PreprocessingDataColumn>(original.dataColumns.Select(cloner.Clone));
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62 | TrainingPartition = cloner.Clone(original.TrainingPartition);
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63 | TestPartition = cloner.Clone(original.TestPartition);
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64 | Transformations = new List<ITransformation>(original.Transformations.Select(cloner.Clone));
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65 |
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66 | InputVariables = new List<string>(original.InputVariables);
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67 | TargetVariable = original.TargetVariable;
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68 |
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69 | RegisterEventHandler();
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70 | }
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71 | public override IDeepCloneable Clone(Cloner cloner) {
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72 | return new PreprocessingData(this, cloner);
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73 | }
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74 |
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75 | [StorableConstructor]
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76 | protected PreprocessingData(bool deserializing)
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77 | : base(deserializing) { }
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78 | [StorableHook(HookType.AfterDeserialization)]
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79 | private void AfterDeserialization() {
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80 | RegisterEventHandler();
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81 | }
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82 |
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83 | private void RegisterEventHandler() {
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84 | Changed += (s, e) => {
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85 | switch (e.Type) {
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86 | case DataPreprocessingChangedEventType.DeleteRow:
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87 | case DataPreprocessingChangedEventType.Any:
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88 | case DataPreprocessingChangedEventType.Transformation:
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89 | int maxRowIndex = Math.Max(0, Rows);
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90 | TrainingPartition.Start = Math.Min(TrainingPartition.Start, maxRowIndex);
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91 | TrainingPartition.End = Math.Min(TrainingPartition.End, maxRowIndex);
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92 | TestPartition.Start = Math.Min(TestPartition.Start, maxRowIndex);
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93 | TestPartition.End = Math.Min(TestPartition.End, maxRowIndex);
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94 | break;
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95 | }
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96 | };
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97 | }
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98 | #endregion
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99 |
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100 | #region Cells
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101 | public bool IsCellEmpty(int columnIndex, int rowIndex) {
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102 | return !dataColumns[columnIndex].IsValidValue(rowIndex);
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103 | }
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104 |
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105 | public T GetCell<T>(int columnIndex, int rowIndex) {
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106 | return dataColumns[columnIndex].TypeSwitch<T>(
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107 | c => c[rowIndex],
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108 | c => c[rowIndex],
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109 | c => c[rowIndex]);
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110 | }
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111 |
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112 | public void SetCell<T>(int columnIndex, int rowIndex, T value) {
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113 | SaveSnapshot(DataPreprocessingChangedEventType.ChangeItem, columnIndex, rowIndex);
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114 |
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115 | for (int i = Rows; i <= rowIndex; i++)
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116 | InsertRow(i);
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117 | for (int i = Columns; i <= columnIndex; i++)
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118 | InsertColumn<T>(i.ToString(), i);
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119 |
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120 | dataColumns[columnIndex].TypeSwitch<T>(value,
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121 | (c, v) => c[rowIndex] = v,
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122 | (c, v) => c[rowIndex] = v,
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123 | (c, v) => c[rowIndex] = v);
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124 |
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125 | if (!IsInTransaction)
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126 | OnChanged(DataPreprocessingChangedEventType.ChangeItem, columnIndex, rowIndex);
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127 | }
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128 |
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129 | public string GetCellAsString(int columnIndex, int rowIndex) {
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130 | return dataColumns[columnIndex].GetValue(rowIndex);
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131 | }
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132 |
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133 | public IEnumerable<T> GetValues<T>(int columnIndex, bool considerSelection) {
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134 | return dataColumns[columnIndex].TypeSwitch<T>(
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135 | c => c.GetValues(considerSelection ? selection[columnIndex] : null),
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136 | c => c.GetValues(considerSelection ? selection[columnIndex] : null),
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137 | c => c.GetValues(considerSelection ? selection[columnIndex] : null));
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138 | }
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139 |
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140 | public void SetValues<T>(int columnIndex, IEnumerable<T> values) {
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141 | SaveSnapshot(DataPreprocessingChangedEventType.ChangeColumn, columnIndex, -1);
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142 | if (VariableHasType<T>(columnIndex)) {
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143 | var name = dataColumns[columnIndex].Name;
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144 | if (dataColumns[columnIndex].IsType<double>()) {
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145 | dataColumns[columnIndex] = new DoublePreprocessingDataColumn(name, (IEnumerable<double>)values);
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146 | } else if (dataColumns[columnIndex].IsType<string>()) {
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147 | dataColumns[columnIndex] = new StringPreprocessingDataColumn(name, (IEnumerable<string>)values);
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148 | } else if (dataColumns[columnIndex].IsType<DateTime>()) {
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149 | dataColumns[columnIndex] = new DateTimePreprocessingDataColumn(name, (IEnumerable<DateTime>)values);
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150 | } else {
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151 | throw new ArgumentException("Unknown column type");
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152 | }
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153 | } else {
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154 | throw new ArgumentException("The datatype of column " + columnIndex + " must be of type " + dataColumns[columnIndex].GetType().Name + " but was " + typeof(T).Name);
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155 | }
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156 | if (!IsInTransaction)
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157 | OnChanged(DataPreprocessingChangedEventType.ChangeColumn, columnIndex, -1);
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158 | }
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159 |
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160 | public bool SetValue(string value, int columnIndex, int rowIndex) {
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161 | var column = dataColumns[columnIndex];
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162 | bool successful = column.SetValue(value, rowIndex);
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163 |
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164 | if (!IsInTransaction)
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165 | OnChanged(DataPreprocessingChangedEventType.ChangeColumn, columnIndex, -1);
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166 |
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167 | return successful;
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168 | }
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169 |
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170 | public int Columns {
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171 | get { return dataColumns.Count; }
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172 | }
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173 |
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174 | public int Rows {
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175 | get { return dataColumns.Any() ? dataColumns.Max(c => c.Length) : 0; }
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176 | }
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177 | #endregion
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178 |
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179 | #region Rows
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180 | public void InsertRow(int rowIndex) {
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181 | SaveSnapshot(DataPreprocessingChangedEventType.DeleteRow, -1, rowIndex);
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182 |
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183 | foreach (var column in dataColumns) {
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184 | column.TypeSwitch(
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185 | c => c.Values.Insert(rowIndex, double.NaN),
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186 | c => c.Values.Insert(rowIndex, null),
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187 | c => c.Values.Insert(rowIndex, DateTime.MinValue));
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188 | }
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189 |
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190 | if (TrainingPartition.Start <= rowIndex && rowIndex <= TrainingPartition.End) {
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191 | TrainingPartition.End++;
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192 | if (TrainingPartition.End <= TestPartition.Start) {
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193 | TestPartition.Start++;
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194 | TestPartition.End++;
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195 | }
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196 | } else if (TestPartition.Start <= rowIndex && rowIndex <= TestPartition.End) {
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197 | TestPartition.End++;
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198 | if (TestPartition.End <= TrainingPartition.Start) {
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199 | TestPartition.Start++;
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200 | TestPartition.End++;
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201 | }
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202 | }
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203 |
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204 | if (!IsInTransaction)
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205 | OnChanged(DataPreprocessingChangedEventType.AddRow, -1, rowIndex);
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206 | }
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207 |
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208 | public void DeleteRow(int rowIndex) {
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209 | DeleteRows(new[] { rowIndex });
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210 | }
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211 | public void DeleteRows(IEnumerable<int> rowIndices) {
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212 | SaveSnapshot(DataPreprocessingChangedEventType.AddRow, -1, -1);
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213 |
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214 | foreach (int rowIndex in rowIndices.OrderByDescending(x => x)) {
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215 | foreach (var column in dataColumns) {
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216 | column.TypeSwitch(
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217 | c => c.Values.RemoveAt(rowIndex),
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218 | c => c.Values.RemoveAt(rowIndex),
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219 | c => c.Values.RemoveAt(rowIndex));
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220 | }
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221 |
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222 | if (TrainingPartition.Start <= rowIndex && rowIndex <= TrainingPartition.End) {
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223 | TrainingPartition.End--;
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224 | if (TrainingPartition.End <= TestPartition.Start) {
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225 | TestPartition.Start--;
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226 | TestPartition.End--;
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227 | }
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228 | } else if (TestPartition.Start <= rowIndex && rowIndex <= TestPartition.End) {
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229 | TestPartition.End--;
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230 | if (TestPartition.End <= TrainingPartition.Start) {
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231 | TestPartition.Start--;
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232 | TestPartition.End--;
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233 | }
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234 | }
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235 | }
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236 |
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237 | if (!IsInTransaction)
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238 | OnChanged(DataPreprocessingChangedEventType.DeleteRow, -1, -1);
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239 | }
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240 |
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241 | public void InsertColumn<T>(string variableName, int columnIndex) {
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242 | SaveSnapshot(DataPreprocessingChangedEventType.DeleteColumn, columnIndex, -1);
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243 |
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244 | if (typeof(T) == typeof(double)) {
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245 | dataColumns.Insert(columnIndex, new DoublePreprocessingDataColumn(variableName, Enumerable.Repeat<double>(double.NaN, Rows)));
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246 | } else if (typeof(T) == typeof(string)) {
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247 | dataColumns.Insert(columnIndex, new StringPreprocessingDataColumn(variableName, Enumerable.Repeat<string>(string.Empty, Rows)));
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248 | } else if (typeof(T) == typeof(DateTime)) {
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249 | dataColumns.Insert(columnIndex, new DateTimePreprocessingDataColumn(variableName, Enumerable.Repeat<DateTime>(DateTime.MinValue, Rows)));
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250 | } else {
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251 | throw new ArgumentException("The datatype of column " + variableName + " must be of type double, string or DateTime");
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252 | }
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253 |
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254 | if (!IsInTransaction)
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255 | OnChanged(DataPreprocessingChangedEventType.AddColumn, columnIndex, -1);
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256 | }
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257 |
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258 | public void DeleteColumn(int columnIndex) {
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259 | SaveSnapshot(DataPreprocessingChangedEventType.AddColumn, columnIndex, -1);
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260 |
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261 | dataColumns.RemoveAt(columnIndex);
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262 |
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263 | if (!IsInTransaction)
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264 | OnChanged(DataPreprocessingChangedEventType.DeleteColumn, columnIndex, -1);
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265 | }
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266 |
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267 | public void RenameColumn(int columnIndex, string name) {
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268 | if (columnIndex < 0 || columnIndex > dataColumns.Count)
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269 | throw new ArgumentOutOfRangeException("columnIndex");
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270 |
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271 | SaveSnapshot(DataPreprocessingChangedEventType.ChangeColumn, columnIndex, -1);
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272 |
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273 | dataColumns[columnIndex].Name = name;
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274 |
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275 | if (!IsInTransaction)
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276 | OnChanged(DataPreprocessingChangedEventType.ChangeColumn, -1, -1);
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277 | }
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278 |
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279 | public void RenameColumns(IList<string> names) {
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280 | if (names == null) throw new ArgumentNullException("names");
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281 | if (names.Count != dataColumns.Count) throw new ArgumentException("number of names must match the number of columns.", "names");
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282 |
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283 | SaveSnapshot(DataPreprocessingChangedEventType.ChangeColumn, -1, -1);
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284 |
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285 | for (int i = 0; i < names.Count; i++)
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286 | dataColumns[i].Name = names[i];
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287 |
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288 | if (!IsInTransaction)
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289 | OnChanged(DataPreprocessingChangedEventType.ChangeColumn, -1, -1);
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290 | }
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291 |
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292 | public bool AreAllStringColumns(IEnumerable<int> columnIndices) {
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293 | return columnIndices.All(VariableHasType<string>);
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294 | }
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295 | #endregion
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296 |
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297 | #region Variables
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298 | public IEnumerable<string> VariableNames {
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299 | get { return dataColumns.Select(c => c.Name); }
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300 | }
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301 |
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302 | public IEnumerable<string> GetDoubleVariableNames() {
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303 | return dataColumns.OfType<DoublePreprocessingDataColumn>().Select(c => c.Name);
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304 | }
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305 |
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306 | public string GetVariableName(int columnIndex) {
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307 | return dataColumns[columnIndex].Name;
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308 | }
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309 |
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310 | public int GetColumnIndex(string variableName) {
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311 | return dataColumns.FindIndex(c => c.Name == variableName);
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312 | }
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313 |
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314 | public bool VariableHasType<T>(int columnIndex) {
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315 | return dataColumns[columnIndex].IsType<T>();
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316 | }
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317 |
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318 | public Type GetVariableType(int columnIndex) {
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319 | return dataColumns[columnIndex].GetValueType();
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320 | }
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321 |
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322 | public IList<string> InputVariables { get; private set; }
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323 | public string TargetVariable { get; private set; } // optional
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324 | #endregion
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325 |
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326 | #region Partitions
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327 | [Storable]
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328 | public IntRange TrainingPartition { get; set; }
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329 | [Storable]
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330 | public IntRange TestPartition { get; set; }
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331 | #endregion
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332 |
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333 | #region Transformations
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334 | [Storable]
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335 | public IList<ITransformation> Transformations { get; protected set; }
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336 | #endregion
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337 |
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338 | #region Validation
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339 | public bool Validate(string value, out string errorMessage, int columnIndex) {
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340 | if (columnIndex < 0 || columnIndex > VariableNames.Count()) {
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341 | throw new ArgumentOutOfRangeException("column index is out of range");
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342 | }
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343 |
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344 | bool valid = false;
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345 | errorMessage = string.Empty;
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346 | if (VariableHasType<double>(columnIndex)) {
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347 | if (string.IsNullOrWhiteSpace(value)) {
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348 | valid = true;
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349 | } else {
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350 | double val;
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351 | valid = double.TryParse(value, out val);
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352 | if (!valid) {
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353 | errorMessage = "Invalid Value (Valid Value Format: \"" + FormatPatterns.GetDoubleFormatPattern() + "\")";
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354 | }
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355 | }
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356 | } else if (VariableHasType<string>(columnIndex)) {
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357 | valid = value != null;
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358 | if (!valid) {
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359 | errorMessage = "Invalid Value (string must not be null)";
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360 | }
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361 | } else if (VariableHasType<DateTime>(columnIndex)) {
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362 | DateTime date;
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363 | valid = DateTime.TryParse(value, out date);
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364 | if (!valid) {
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365 | errorMessage = "Invalid Value (Valid Value Format: \"" + CultureInfo.CurrentCulture.DateTimeFormat + "\"";
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366 | }
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367 | } else {
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368 | throw new ArgumentException("column " + columnIndex + " contains a non supported type.");
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369 | }
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370 |
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371 | return valid;
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372 | }
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373 | #endregion
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374 |
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375 | #region Import & Export
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376 | public void Import(IDataAnalysisProblemData problemData) {
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377 | var dataset = problemData.Dataset;
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378 | InputVariables = new List<string>(problemData.AllowedInputVariables);
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379 | TargetVariable = problemData is IRegressionProblemData ? ((IRegressionProblemData)problemData).TargetVariable
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380 | : problemData is IClassificationProblemData ? ((IClassificationProblemData)problemData).TargetVariable
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381 | : null;
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382 |
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383 | dataColumns.Clear();
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384 | foreach (var variableName in problemData.Dataset.VariableNames) {
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385 | if (dataset.VariableHasType<double>(variableName)) {
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386 | dataColumns.Add(new DoublePreprocessingDataColumn(variableName, dataset.GetDoubleValues(variableName)));
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387 | } else if (dataset.VariableHasType<string>(variableName)) {
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388 | dataColumns.Add(new StringPreprocessingDataColumn(variableName, dataset.GetStringValues(variableName)));
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389 | } else if (dataset.VariableHasType<DateTime>(variableName)) {
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390 | dataColumns.Add(new DateTimePreprocessingDataColumn(variableName, dataset.GetDateTimeValues(variableName)));
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391 | } else {
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392 | throw new ArgumentException("The datatype of column " + variableName + " must be of type double, string or DateTime");
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393 | }
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394 | }
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395 |
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396 | TrainingPartition = new IntRange(problemData.TrainingPartition.Start, problemData.TrainingPartition.End);
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397 | TestPartition = new IntRange(problemData.TestPartition.Start, problemData.TestPartition.End);
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398 | }
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399 |
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400 | public Dataset ExportToDataset() {
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401 | IList<IList> values = new List<IList>();
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402 |
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403 | for (int i = 0; i < Columns; i++) {
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404 | var doubleColumn = dataColumns[i] as DoublePreprocessingDataColumn;
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405 | var stringColumn = dataColumns[i] as StringPreprocessingDataColumn;
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406 | var dateTimeColumn = dataColumns[i] as DateTimePreprocessingDataColumn;
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407 | if (doubleColumn != null) values.Add(new List<double>(doubleColumn.GetValues()));
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408 | else if (stringColumn != null) values.Add(new List<string>(stringColumn.GetValues()));
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409 | else if (dateTimeColumn != null) values.Add(new List<DateTime>(dateTimeColumn.GetValues()));
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410 | else throw new InvalidOperationException("Column type not supported for export");
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411 | }
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412 |
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413 | return new Dataset(VariableNames, values);
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414 | }
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415 | #endregion
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416 |
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417 | #region Selection
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418 | [Storable]
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419 | protected IDictionary<int, IList<int>> selection;
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420 | public IDictionary<int, IList<int>> Selection {
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421 | get { return selection; }
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422 | set {
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423 | selection = value;
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424 | OnSelectionChanged();
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425 | }
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426 | }
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427 | public void ClearSelection() {
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428 | Selection = new Dictionary<int, IList<int>>();
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429 | }
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430 |
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431 | public event EventHandler SelectionChanged;
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432 | protected void OnSelectionChanged() {
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433 | var listeners = SelectionChanged;
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434 | if (listeners != null) listeners(this, EventArgs.Empty);
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435 | }
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436 | #endregion
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437 |
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438 | #region Transactions
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439 | // Snapshot/History are not storable/cloneable on purpose
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440 | private class Snapshot {
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441 | public List<PreprocessingDataColumn> DataColumns { get; set; }
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442 |
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443 | public IntRange TrainingPartition { get; set; }
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444 | public IntRange TestPartition { get; set; }
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445 | public IList<ITransformation> Transformations { get; set; }
|
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446 | public DataPreprocessingChangedEventType ChangedType { get; set; }
|
---|
447 |
|
---|
448 | public int ChangedColumn { get; set; }
|
---|
449 | public int ChangedRow { get; set; }
|
---|
450 | }
|
---|
451 |
|
---|
452 | public event DataPreprocessingChangedEventHandler Changed;
|
---|
453 | protected virtual void OnChanged(DataPreprocessingChangedEventType type, int column, int row) {
|
---|
454 | var listeners = Changed;
|
---|
455 | if (listeners != null) listeners(this, new DataPreprocessingChangedEventArgs(type, column, row));
|
---|
456 | }
|
---|
457 |
|
---|
458 | private const int MaxUndoDepth = 5;
|
---|
459 |
|
---|
460 | private readonly IList<Snapshot> undoHistory = new List<Snapshot>();
|
---|
461 | private readonly Stack<DataPreprocessingChangedEventType> eventStack = new Stack<DataPreprocessingChangedEventType>();
|
---|
462 |
|
---|
463 | public bool IsInTransaction { get { return eventStack.Count > 0; } }
|
---|
464 |
|
---|
465 | private void SaveSnapshot(DataPreprocessingChangedEventType changedType, int column, int row) {
|
---|
466 | if (IsInTransaction) return;
|
---|
467 |
|
---|
468 | var cloner = new Cloner();
|
---|
469 | var currentSnapshot = new Snapshot {
|
---|
470 | DataColumns = new List<PreprocessingDataColumn>(dataColumns.Select(cloner.Clone)),
|
---|
471 | TrainingPartition = new IntRange(TrainingPartition.Start, TrainingPartition.End),
|
---|
472 | TestPartition = new IntRange(TestPartition.Start, TestPartition.End),
|
---|
473 | Transformations = new List<ITransformation>(Transformations),
|
---|
474 | ChangedType = changedType,
|
---|
475 | ChangedColumn = column,
|
---|
476 | ChangedRow = row
|
---|
477 | };
|
---|
478 |
|
---|
479 | if (undoHistory.Count >= MaxUndoDepth)
|
---|
480 | undoHistory.RemoveAt(0);
|
---|
481 |
|
---|
482 | undoHistory.Add(currentSnapshot);
|
---|
483 | }
|
---|
484 |
|
---|
485 | public bool IsUndoAvailable {
|
---|
486 | get { return undoHistory.Count > 0; }
|
---|
487 | }
|
---|
488 |
|
---|
489 | public void Undo() {
|
---|
490 | if (IsUndoAvailable) {
|
---|
491 | Snapshot previousSnapshot = undoHistory[undoHistory.Count - 1];
|
---|
492 | dataColumns = previousSnapshot.DataColumns;
|
---|
493 | TrainingPartition = previousSnapshot.TrainingPartition;
|
---|
494 | TestPartition = previousSnapshot.TestPartition;
|
---|
495 | Transformations = previousSnapshot.Transformations;
|
---|
496 | undoHistory.Remove(previousSnapshot);
|
---|
497 | OnChanged(previousSnapshot.ChangedType,
|
---|
498 | previousSnapshot.ChangedColumn,
|
---|
499 | previousSnapshot.ChangedRow);
|
---|
500 | }
|
---|
501 | }
|
---|
502 |
|
---|
503 | public void InTransaction(Action action, DataPreprocessingChangedEventType type = DataPreprocessingChangedEventType.Any) {
|
---|
504 | BeginTransaction(type);
|
---|
505 | action();
|
---|
506 | EndTransaction();
|
---|
507 | }
|
---|
508 |
|
---|
509 | public void BeginTransaction(DataPreprocessingChangedEventType type) {
|
---|
510 | SaveSnapshot(type, -1, -1);
|
---|
511 | eventStack.Push(type);
|
---|
512 | }
|
---|
513 |
|
---|
514 | public void EndTransaction() {
|
---|
515 | if (eventStack.Count == 0)
|
---|
516 | throw new InvalidOperationException("There is no open transaction that can be ended.");
|
---|
517 |
|
---|
518 | var @event = eventStack.Pop();
|
---|
519 | OnChanged(@event, -1, -1);
|
---|
520 | }
|
---|
521 | #endregion
|
---|
522 |
|
---|
523 | /* #region Statistics
|
---|
524 | public T GetMin<T>(int columnIndex, bool considerSelection = false, T emptyValue = default(T)) {
|
---|
525 | try {
|
---|
526 | return dataColumns[columnIndex].TypeSwitch<T>(
|
---|
527 | col => col.GetMin(considerSelection ? Selection[columnIndex] : null),
|
---|
528 | col => col.GetMin(considerSelection ? Selection[columnIndex] : null),
|
---|
529 | col => col.GetMin(considerSelection ? Selection[columnIndex] : null));
|
---|
530 | } catch (InvalidOperationException) {
|
---|
531 | return emptyValue;
|
---|
532 | }
|
---|
533 | }
|
---|
534 |
|
---|
535 | public T GetMax<T>(int columnIndex, bool considerSelection = false, T emptyValue = default(T)) {
|
---|
536 | var values = GetValuesWithoutMissingValues<T>(columnIndex, considerSelection);
|
---|
537 | return values.Any() ? values.Max() : emptyValue;
|
---|
538 | }
|
---|
539 |
|
---|
540 | public T GetMean<T>(int columnIndex, bool considerSelection = false, T emptyValue = default(T)) {
|
---|
541 | return
|
---|
542 |
|
---|
543 |
|
---|
544 | if (typeof(T) == typeof(double)) {
|
---|
545 | var values = GetValuesWithoutMissingValues<double>(columnIndex, considerSelection);
|
---|
546 | return values.Any() ? Convert<T>(values.Average()) : emptyValue;
|
---|
547 | }
|
---|
548 | if (typeof(T) == typeof(string)) {
|
---|
549 | return Convert<T>(string.Empty);
|
---|
550 | }
|
---|
551 | if (typeof(T) == typeof(DateTime)) {
|
---|
552 | var values = GetValuesWithoutMissingValues<DateTime>(columnIndex, considerSelection);
|
---|
553 | return values.Any() ? Convert<T>(AggregateAsDouble(values, Enumerable.Average)) : emptyValue;
|
---|
554 | }
|
---|
555 |
|
---|
556 | throw new InvalidOperationException(typeof(T) + " not supported");
|
---|
557 | }
|
---|
558 |
|
---|
559 | public T GetMedian<T>(int columnIndex, bool considerSelection = false, T emptyValue = default(T)) where T : IComparable<T> {
|
---|
560 | if (typeof(T) == typeof(double)) {// IEnumerable<double> is faster
|
---|
561 | var doubleValues = GetValuesWithoutMissingValues<double>(columnIndex, considerSelection);
|
---|
562 | return doubleValues.Any() ? Convert<T>(doubleValues.Median()) : emptyValue;
|
---|
563 | }
|
---|
564 | var values = GetValuesWithoutMissingValues<T>(columnIndex, considerSelection);
|
---|
565 | return values.Any() ? values.Quantile(0.5) : emptyValue;
|
---|
566 | }
|
---|
567 |
|
---|
568 | public T GetMode<T>(int columnIndex, bool considerSelection = false, T emptyValue = default(T)) where T : IEquatable<T> {
|
---|
569 | var values = GetValuesWithoutMissingValues<T>(columnIndex, considerSelection);
|
---|
570 | return values.Any() ? values.GroupBy(x => x).OrderByDescending(g => g.Count()).Select(g => g.Key).First() : emptyValue;
|
---|
571 | }
|
---|
572 |
|
---|
573 | public T GetStandardDeviation<T>(int columnIndex, bool considerSelection = false, T emptyValue = default(T)) {
|
---|
574 | if (typeof(T) == typeof(double)) {
|
---|
575 | var values = GetValuesWithoutMissingValues<double>(columnIndex, considerSelection);
|
---|
576 | return values.Any() ? Convert<T>(values.StandardDeviation()) : emptyValue;
|
---|
577 | }
|
---|
578 | // For DateTime, std.dev / variance would have to be TimeSpan
|
---|
579 | //if (typeof(T) == typeof(DateTime)) {
|
---|
580 | // var values = GetValuesWithoutMissingValues<DateTime>(columnIndex, considerSelection);
|
---|
581 | // return values.Any() ? Convert<T>(AggregateAsDouble(values, EnumerableStatisticExtensions.StandardDeviation)) : emptyValue;
|
---|
582 | //}
|
---|
583 | return default(T);
|
---|
584 | }
|
---|
585 |
|
---|
586 | public T GetVariance<T>(int columnIndex, bool considerSelection = false, T emptyValue = default(T)) {
|
---|
587 | if (typeof(T) == typeof(double)) {
|
---|
588 | var values = GetValuesWithoutMissingValues<double>(columnIndex, considerSelection);
|
---|
589 | return values.Any() ? Convert<T>(values.Variance()) : emptyValue;
|
---|
590 | }
|
---|
591 | // DateTime variance often overflows long, thus the corresponding DateTime is invalid
|
---|
592 | //if (typeof(T) == typeof(DateTime)) {
|
---|
593 | // var values = GetValuesWithoutMissingValues<DateTime>(columnIndex, considerSelection);
|
---|
594 | // return values.Any() ? Convert<T>(AggregateAsDouble(values, EnumerableStatisticExtensions.Variance)) : emptyValue;
|
---|
595 | //}
|
---|
596 | return default(T);
|
---|
597 | }
|
---|
598 |
|
---|
599 | public T GetQuantile<T>(double alpha, int columnIndex, bool considerSelection = false, T emptyValue = default(T)) where T : IComparable<T> {
|
---|
600 | if (typeof(T) == typeof(double)) {// IEnumerable<double> is faster
|
---|
601 | var doubleValues = GetValuesWithoutMissingValues<double>(columnIndex, considerSelection);
|
---|
602 | return doubleValues.Any() ? Convert<T>(doubleValues.Quantile(alpha)) : emptyValue;
|
---|
603 | }
|
---|
604 | var values = GetValuesWithoutMissingValues<T>(columnIndex, considerSelection);
|
---|
605 | return values.Any() ? values.Quantile(alpha) : emptyValue;
|
---|
606 | }
|
---|
607 |
|
---|
608 | public int GetDistinctValues<T>(int columnIndex, bool considerSelection = false) {
|
---|
609 | var values = GetValuesWithoutMissingValues<T>(columnIndex, considerSelection);
|
---|
610 | return values.GroupBy(x => x).Count();
|
---|
611 | }
|
---|
612 |
|
---|
613 | private IEnumerable<T> GetValuesWithoutMissingValues<T>(int columnIndex, bool considerSelection) {
|
---|
614 | return GetValues<T>(columnIndex, considerSelection).Where(x =>
|
---|
615 | ColumnTypeSwitch<T, bool>(dataColumns[columnIndex], x,
|
---|
616 | (c, v) => c.IsValidValue(v),
|
---|
617 | (c, v) => c.IsValidValue(v),
|
---|
618 | (c, v) => c.IsValidValue(v)
|
---|
619 | ));
|
---|
620 | }
|
---|
621 |
|
---|
622 | private static DateTime AggregateAsDouble(IEnumerable<DateTime> values, Func<IEnumerable<double>, double> func) {
|
---|
623 | return new DateTime((long)(func(values.Select(x => (double)x.Ticks / TimeSpan.TicksPerSecond)) * TimeSpan.TicksPerSecond));
|
---|
624 | }
|
---|
625 |
|
---|
626 | public int GetMissingValueCount() {
|
---|
627 | int count = 0;
|
---|
628 | for (int i = 0; i < Columns; ++i) {
|
---|
629 | count += GetMissingValueCount(i);
|
---|
630 | }
|
---|
631 | return count;
|
---|
632 | }
|
---|
633 | public int GetMissingValueCount(int columnIndex) {
|
---|
634 | int sum = 0;
|
---|
635 | for (int i = 0; i < Rows; i++) {
|
---|
636 | if (IsCellEmpty(columnIndex, i))
|
---|
637 | sum++;
|
---|
638 | }
|
---|
639 | return sum;
|
---|
640 | }
|
---|
641 | public int GetRowMissingValueCount(int rowIndex) {
|
---|
642 | int sum = 0;
|
---|
643 | for (int i = 0; i < Columns; i++) {
|
---|
644 | if (IsCellEmpty(i, rowIndex))
|
---|
645 | sum++;
|
---|
646 | }
|
---|
647 | return sum;
|
---|
648 | }
|
---|
649 | #endregion */
|
---|
650 | }
|
---|
651 |
|
---|
652 | // Adapted from HeuristicLab.Common.EnumerableStatisticExtensions
|
---|
653 | internal static class EnumerableExtensions {
|
---|
654 | public static T Quantile<T>(this IEnumerable<T> values, double alpha) where T : IComparable<T> {
|
---|
655 | T[] valuesArr = values.ToArray();
|
---|
656 | int n = valuesArr.Length;
|
---|
657 | if (n == 0) throw new InvalidOperationException("Enumeration contains no elements.");
|
---|
658 |
|
---|
659 | var pos = n * alpha;
|
---|
660 |
|
---|
661 | return Select((int)Math.Ceiling(pos) - 1, valuesArr);
|
---|
662 |
|
---|
663 | }
|
---|
664 |
|
---|
665 | private static T Select<T>(int k, T[] arr) where T : IComparable<T> {
|
---|
666 | int i, ir, j, l, mid, n = arr.Length;
|
---|
667 | T a;
|
---|
668 | l = 0;
|
---|
669 | ir = n - 1;
|
---|
670 | for (;;) {
|
---|
671 | if (ir <= l + 1) {
|
---|
672 | // Active partition contains 1 or 2 elements.
|
---|
673 | if (ir == l + 1 && arr[ir].CompareTo(arr[l]) < 0) {
|
---|
674 | // Case of 2 elements.
|
---|
675 | Swap(arr, l, ir);
|
---|
676 | }
|
---|
677 | return arr[k];
|
---|
678 | } else {
|
---|
679 | mid = (l + ir) >> 1; // Choose median of left, center, and right elements
|
---|
680 | Swap(arr, mid, l + 1); // as partitioning element a. Also
|
---|
681 |
|
---|
682 | if (arr[l].CompareTo(arr[ir]) > 0) { // rearrange so that arr[l] arr[ir] <= arr[l+1],
|
---|
683 | Swap(arr, l, ir); // . arr[ir] >= arr[l+1]
|
---|
684 | }
|
---|
685 |
|
---|
686 | if (arr[l + 1].CompareTo(arr[ir]) > 0) {
|
---|
687 | Swap(arr, l + 1, ir);
|
---|
688 | }
|
---|
689 | if (arr[l].CompareTo(arr[l + 1]) > 0) {
|
---|
690 | Swap(arr, l, l + 1);
|
---|
691 | }
|
---|
692 | i = l + 1; // Initialize pointers for partitioning.
|
---|
693 | j = ir;
|
---|
694 | a = arr[l + 1]; // Partitioning element.
|
---|
695 | for (;;) { // Beginning of innermost loop.
|
---|
696 | do i++; while (arr[i].CompareTo(a) < 0); // Scan up to find element > a.
|
---|
697 | do j--; while (arr[j].CompareTo(a) > 0); // Scan down to find element < a.
|
---|
698 | if (j < i) break; // Pointers crossed. Partitioning complete.
|
---|
699 | Swap(arr, i, j);
|
---|
700 | } // End of innermost loop.
|
---|
701 | arr[l + 1] = arr[j]; // Insert partitioning element.
|
---|
702 | arr[j] = a;
|
---|
703 | if (j >= k) ir = j - 1; // Keep active the partition that contains the
|
---|
704 | if (j <= k) l = i; // kth element.
|
---|
705 | }
|
---|
706 | }
|
---|
707 | }
|
---|
708 |
|
---|
709 | private static void Swap<T>(T[] arr, int i, int j) {
|
---|
710 | T temp = arr[i];
|
---|
711 | arr[i] = arr[j];
|
---|
712 | arr[j] = temp;
|
---|
713 | }
|
---|
714 | }
|
---|
715 | }
|
---|