[10368] | 1 | #region License Information
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| 2 |
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| 3 | /* HeuristicLab
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[17193] | 4 | * Copyright (C) Heuristic and Evolutionary Algorithms Laboratory (HEAL)
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[10368] | 5 | *
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| 6 | * This file is part of HeuristicLab.
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| 7 | *
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| 8 | * HeuristicLab is free software: you can redistribute it and/or modify
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| 9 | * it under the terms of the GNU General Public License as published by
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| 10 | * the Free Software Foundation, either version 3 of the License, or
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| 11 | * (at your option) any later version.
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| 12 | *
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| 13 | * HeuristicLab is distributed in the hope that it will be useful,
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| 14 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 15 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 16 | * GNU General Public License for more details.
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| 17 | *
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| 18 | * You should have received a copy of the GNU General Public License
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| 19 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
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| 20 | */
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| 21 |
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| 22 | #endregion
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| 23 |
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| 24 | using System.Linq;
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| 25 | using HeuristicLab.Common;
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| 26 | using HeuristicLab.Core;
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| 27 | using HeuristicLab.Data;
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| 28 | using HeuristicLab.Encodings.SymbolicExpressionTreeEncoding;
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| 29 | using HeuristicLab.Operators;
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| 30 | using HeuristicLab.Parameters;
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[16676] | 31 | using HEAL.Attic;
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[10368] | 32 |
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| 33 | namespace HeuristicLab.Problems.DataAnalysis.Symbolic {
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[16676] | 34 | [StorableType("DBE27385-2E8C-4314-88B4-F96A5240FC9D")]
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[10368] | 35 | [Item("SymbolicExpressionTreePruningOperator", "An operator that replaces introns with constant values in a symbolic expression tree.")]
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[12358] | 36 | public abstract class SymbolicDataAnalysisExpressionPruningOperator : SingleSuccessorOperator, ISymbolicExpressionTreeOperator {
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[10469] | 37 | #region parameter names
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| 38 | private const string ProblemDataParameterName = "ProblemData";
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| 39 | private const string SymbolicDataAnalysisModelParameterName = "SymbolicDataAnalysisModel";
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| 40 | private const string ImpactValuesCalculatorParameterName = "ImpactValuesCalculator";
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| 41 | private const string PrunedSubtreesParameterName = "PrunedSubtrees";
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| 42 | private const string PrunedTreesParameterName = "PrunedTrees";
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[12361] | 43 | private const string PrunedNodesParameterName = "PrunedNodes";
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[10469] | 44 | private const string FitnessCalculationPartitionParameterName = "FitnessCalculationPartition";
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| 45 | private const string NodeImpactThresholdParameterName = "ImpactThreshold";
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| 46 | private const string PruneOnlyZeroImpactNodesParameterName = "PruneOnlyZeroImpactNodes";
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| 47 | private const string SymbolicExpressionTreeParameterName = "SymbolicExpressionTree"; // the tree to be pruned
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| 48 | private const string QualityParameterName = "Quality"; // the quality
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| 49 | private const string EstimationLimitsParameterName = "EstimationLimits";
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| 50 | private const string InterpreterParameterName = "SymbolicExpressionTreeInterpreter";
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[12720] | 51 | private const string ApplyLinearScalingParameterName = "ApplyLinearScaling";
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[10469] | 52 | #endregion
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| 53 |
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[10368] | 54 | #region parameter properties
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[10469] | 55 | public ILookupParameter<ISymbolicExpressionTree> SymbolicExpressionTreeParameter {
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| 56 | get { return (ILookupParameter<ISymbolicExpressionTree>)Parameters[SymbolicExpressionTreeParameterName]; }
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[10368] | 57 | }
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[10469] | 58 | public ILookupParameter<DoubleValue> QualityParameter {
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| 59 | get { return (ILookupParameter<DoubleValue>)Parameters[QualityParameterName]; }
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[10368] | 60 | }
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[10469] | 61 | public ILookupParameter<IDataAnalysisProblemData> ProblemDataParameter {
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| 62 | get { return (ILookupParameter<IDataAnalysisProblemData>)Parameters[ProblemDataParameterName]; }
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| 63 | }
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| 64 | public IValueParameter<ISymbolicDataAnalysisSolutionImpactValuesCalculator> ImpactValuesCalculatorParameter {
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| 65 | get { return (IValueParameter<ISymbolicDataAnalysisSolutionImpactValuesCalculator>)Parameters[ImpactValuesCalculatorParameterName]; }
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| 66 | }
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| 67 | public ILookupParameter<IntRange> FitnessCalculationPartitionParameter {
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| 68 | get { return (ILookupParameter<IntRange>)Parameters[FitnessCalculationPartitionParameterName]; }
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| 69 | }
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| 70 | public ILookupParameter<IntValue> PrunedSubtreesParameter {
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| 71 | get { return (ILookupParameter<IntValue>)Parameters[PrunedSubtreesParameterName]; }
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| 72 | }
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| 73 | public ILookupParameter<IntValue> PrunedTreesParameter {
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| 74 | get { return (ILookupParameter<IntValue>)Parameters[PrunedTreesParameterName]; }
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| 75 | }
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[12361] | 76 | public ILookupParameter<IntValue> PrunedNodesParameter {
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| 77 | get { return (ILookupParameter<IntValue>)Parameters[PrunedNodesParameterName]; }
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| 78 | }
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[10469] | 79 | public IFixedValueParameter<DoubleValue> NodeImpactThresholdParameter {
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| 80 | get { return (IFixedValueParameter<DoubleValue>)Parameters[NodeImpactThresholdParameterName]; }
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| 81 | }
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| 82 | public IFixedValueParameter<BoolValue> PruneOnlyZeroImpactNodesParameter {
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| 83 | get { return (IFixedValueParameter<BoolValue>)Parameters[PruneOnlyZeroImpactNodesParameterName]; }
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| 84 | }
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| 85 | public ILookupParameter<DoubleLimit> EstimationLimitsParameter {
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| 86 | get { return (ILookupParameter<DoubleLimit>)Parameters[EstimationLimitsParameterName]; }
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| 87 | }
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| 88 | public ILookupParameter<ISymbolicDataAnalysisExpressionTreeInterpreter> InterpreterParameter {
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| 89 | get { return (ILookupParameter<ISymbolicDataAnalysisExpressionTreeInterpreter>)Parameters[InterpreterParameterName]; }
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| 90 | }
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[12720] | 91 | public ILookupParameter<BoolValue> ApplyLinearScalingParameter {
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| 92 | get { return (ILookupParameter<BoolValue>)Parameters[ApplyLinearScalingParameterName]; }
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| 93 | }
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[10368] | 94 | #endregion
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[11025] | 95 |
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[10368] | 96 | #region properties
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[12358] | 97 | public ISymbolicDataAnalysisSolutionImpactValuesCalculator ImpactValuesCalculator {
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| 98 | get { return ImpactValuesCalculatorParameter.Value; }
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| 99 | set { ImpactValuesCalculatorParameter.Value = value; }
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| 100 | }
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| 101 | public bool PruneOnlyZeroImpactNodes {
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[11025] | 102 | get { return PruneOnlyZeroImpactNodesParameter.Value.Value; }
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| 103 | set { PruneOnlyZeroImpactNodesParameter.Value.Value = value; }
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| 104 | }
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[12358] | 105 | public double NodeImpactThreshold {
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[11025] | 106 | get { return NodeImpactThresholdParameter.Value.Value; }
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| 107 | set { NodeImpactThresholdParameter.Value.Value = value; }
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| 108 | }
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[10368] | 109 | #endregion
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[10417] | 110 |
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| 111 | [StorableConstructor]
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[16676] | 112 | protected SymbolicDataAnalysisExpressionPruningOperator(StorableConstructorFlag _) : base(_) { }
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[10417] | 113 | protected SymbolicDataAnalysisExpressionPruningOperator(SymbolicDataAnalysisExpressionPruningOperator original, Cloner cloner)
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[10469] | 114 | : base(original, cloner) { }
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[10368] | 115 |
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[12189] | 116 | protected SymbolicDataAnalysisExpressionPruningOperator(ISymbolicDataAnalysisSolutionImpactValuesCalculator impactValuesCalculator) {
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[10469] | 117 | #region add parameters
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| 118 | Parameters.Add(new LookupParameter<IDataAnalysisProblemData>(ProblemDataParameterName));
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| 119 | Parameters.Add(new LookupParameter<ISymbolicDataAnalysisModel>(SymbolicDataAnalysisModelParameterName));
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| 120 | Parameters.Add(new LookupParameter<IntRange>(FitnessCalculationPartitionParameterName));
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[12361] | 121 | Parameters.Add(new LookupParameter<IntValue>(PrunedNodesParameterName, "A counter of how many nodes were pruned."));
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[10469] | 122 | Parameters.Add(new LookupParameter<IntValue>(PrunedSubtreesParameterName, "A counter of how many subtrees were replaced."));
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| 123 | Parameters.Add(new LookupParameter<IntValue>(PrunedTreesParameterName, "A counter of how many trees were pruned."));
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| 124 | Parameters.Add(new FixedValueParameter<BoolValue>(PruneOnlyZeroImpactNodesParameterName, "Specify whether or not only zero impact nodes should be pruned."));
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| 125 | Parameters.Add(new FixedValueParameter<DoubleValue>(NodeImpactThresholdParameterName, "Specifies an impact value threshold below which nodes should be pruned."));
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| 126 | Parameters.Add(new LookupParameter<DoubleLimit>(EstimationLimitsParameterName));
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| 127 | Parameters.Add(new LookupParameter<ISymbolicDataAnalysisExpressionTreeInterpreter>(InterpreterParameterName));
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| 128 | Parameters.Add(new LookupParameter<ISymbolicExpressionTree>(SymbolicExpressionTreeParameterName));
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| 129 | Parameters.Add(new LookupParameter<DoubleValue>(QualityParameterName));
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[12720] | 130 | Parameters.Add(new LookupParameter<BoolValue>(ApplyLinearScalingParameterName));
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[12189] | 131 | Parameters.Add(new ValueParameter<ISymbolicDataAnalysisSolutionImpactValuesCalculator>(ImpactValuesCalculatorParameterName, impactValuesCalculator));
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[10469] | 132 | #endregion
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[10368] | 133 | }
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[11025] | 134 |
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[12744] | 135 | [StorableHook(HookType.AfterDeserialization)]
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| 136 | private void AfterDeserialization() {
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| 137 | // BackwardsCompatibility3.3
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| 138 | #region Backwards compatible code, remove with 3.4
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| 139 | if (!Parameters.ContainsKey(PrunedNodesParameterName)) {
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| 140 | Parameters.Add(new LookupParameter<IntValue>(PrunedNodesParameterName, "A counter of how many nodes were pruned."));
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| 141 | }
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| 142 | if (!Parameters.ContainsKey(ApplyLinearScalingParameterName)) {
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| 143 | Parameters.Add(new LookupParameter<BoolValue>(ApplyLinearScalingParameterName));
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| 144 | }
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| 145 | if (!Parameters.ContainsKey(ImpactValuesCalculatorParameterName)) {
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| 146 | // value must be set by derived operators (regression/classification)
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| 147 | Parameters.Add(new ValueParameter<ISymbolicDataAnalysisSolutionImpactValuesCalculator>(ImpactValuesCalculatorParameterName));
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| 148 | }
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| 149 | #endregion
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| 150 | }
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| 151 |
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[12189] | 152 | protected abstract ISymbolicDataAnalysisModel CreateModel(ISymbolicExpressionTree tree, ISymbolicDataAnalysisExpressionTreeInterpreter interpreter, IDataAnalysisProblemData problemData, DoubleLimit estimationLimits);
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[11025] | 153 |
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| 154 | protected abstract double Evaluate(IDataAnalysisModel model);
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| 155 |
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[10469] | 156 | public override IOperation Apply() {
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[12358] | 157 | var tree = SymbolicExpressionTreeParameter.ActualValue;
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| 158 | var problemData = ProblemDataParameter.ActualValue;
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| 159 | var fitnessCalculationPartition = FitnessCalculationPartitionParameter.ActualValue;
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| 160 | var estimationLimits = EstimationLimitsParameter.ActualValue;
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| 161 | var interpreter = InterpreterParameter.ActualValue;
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| 162 |
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| 163 | var model = CreateModel(tree, interpreter, problemData, estimationLimits);
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| 164 | var nodes = tree.Root.GetSubtree(0).GetSubtree(0).IterateNodesPrefix().ToList();
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[12720] | 165 | var rows = Enumerable.Range(fitnessCalculationPartition.Start, fitnessCalculationPartition.Size).ToList();
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[10469] | 166 | var prunedSubtrees = 0;
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| 167 | var prunedTrees = 0;
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[12361] | 168 | var prunedNodes = 0;
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[10414] | 169 |
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[12720] | 170 | double qualityForImpactsCalculation = double.NaN;
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[10368] | 171 |
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[10469] | 172 | for (int i = 0; i < nodes.Count; ++i) {
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| 173 | var node = nodes[i];
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[10368] | 174 | if (node is ConstantTreeNode) continue;
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| 175 |
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[10469] | 176 | double impactValue, replacementValue;
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[12720] | 177 | double newQualityForImpacts;
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| 178 | ImpactValuesCalculator.CalculateImpactAndReplacementValues(model, node, problemData, rows, out impactValue, out replacementValue, out newQualityForImpacts, qualityForImpactsCalculation);
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[10368] | 179 |
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[12358] | 180 | if (PruneOnlyZeroImpactNodes && !impactValue.IsAlmost(0.0)) continue;
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| 181 | if (!PruneOnlyZeroImpactNodes && impactValue > NodeImpactThreshold) continue;
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[10368] | 182 |
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[11025] | 183 | var constantNode = (ConstantTreeNode)node.Grammar.GetSymbol("Constant").CreateTreeNode();
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| 184 | constantNode.Value = replacementValue;
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| 185 |
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[12361] | 186 | var length = node.GetLength();
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[10368] | 187 | ReplaceWithConstant(node, constantNode);
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[12361] | 188 | i += length - 1; // skip subtrees under the node that was folded
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[10368] | 189 |
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| 190 | prunedSubtrees++;
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[12361] | 191 | prunedNodes += length;
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[12720] | 192 |
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| 193 | qualityForImpactsCalculation = newQualityForImpacts;
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[10368] | 194 | }
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| 195 |
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[10469] | 196 | if (prunedSubtrees > 0) prunedTrees = 1;
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| 197 | PrunedSubtreesParameter.ActualValue = new IntValue(prunedSubtrees);
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| 198 | PrunedTreesParameter.ActualValue = new IntValue(prunedTrees);
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[12361] | 199 | PrunedNodesParameter.ActualValue = new IntValue(prunedNodes);
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[10469] | 200 |
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[12720] | 201 | if (prunedSubtrees > 0) // if nothing was pruned then there's no need to re-evaluate the tree
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| 202 | QualityParameter.ActualValue.Value = Evaluate(model);
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| 203 |
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[10368] | 204 | return base.Apply();
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| 205 | }
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[11025] | 206 |
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[12189] | 207 | protected static void ReplaceWithConstant(ISymbolicExpressionTreeNode original, ISymbolicExpressionTreeNode replacement) {
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[10368] | 208 | var parent = original.Parent;
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| 209 | var i = parent.IndexOfSubtree(original);
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| 210 | parent.RemoveSubtree(i);
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| 211 | parent.InsertSubtree(i, replacement);
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| 212 | }
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| 213 | }
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| 214 | }
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