1 | #region License Information
|
---|
2 | /* HeuristicLab
|
---|
3 | * Copyright (C) 2002-2018 Heuristic and Evolutionary Algorithms Laboratory (HEAL)
|
---|
4 | *
|
---|
5 | * This file is part of HeuristicLab.
|
---|
6 | *
|
---|
7 | * HeuristicLab is free software: you can redistribute it and/or modify
|
---|
8 | * it under the terms of the GNU General Public License as published by
|
---|
9 | * the Free Software Foundation, either version 3 of the License, or
|
---|
10 | * (at your option) any later version.
|
---|
11 | *
|
---|
12 | * HeuristicLab is distributed in the hope that it will be useful,
|
---|
13 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
|
---|
14 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
---|
15 | * GNU General Public License for more details.
|
---|
16 | *
|
---|
17 | * You should have received a copy of the GNU General Public License
|
---|
18 | * along with HeuristicLab. If not, see <http://www.gnu.org/licenses/>.
|
---|
19 | */
|
---|
20 | #endregion
|
---|
21 | using System.Linq;
|
---|
22 | using HeuristicLab.Common;
|
---|
23 | using HeuristicLab.Core;
|
---|
24 | using HeuristicLab.Optimization;
|
---|
25 | using HeuristicLab.Parameters;
|
---|
26 | using HeuristicLab.Persistence.Default.CompositeSerializers.Storable;
|
---|
27 |
|
---|
28 | namespace HeuristicLab.Problems.DataAnalysis.Symbolic.Classification {
|
---|
29 | [Item("Symbolic Classification Problem (single-objective)", "Represents a single objective symbolic classfication problem.")]
|
---|
30 | [StorableClass]
|
---|
31 | [Creatable(CreatableAttribute.Categories.GeneticProgrammingProblems, Priority = 120)]
|
---|
32 | public class SymbolicClassificationSingleObjectiveProblem : SymbolicDataAnalysisSingleObjectiveProblem<IClassificationProblemData, ISymbolicClassificationSingleObjectiveEvaluator, ISymbolicDataAnalysisSolutionCreator>, IClassificationProblem {
|
---|
33 | private const double PunishmentFactor = 10;
|
---|
34 | private const int InitialMaximumTreeDepth = 8;
|
---|
35 | private const int InitialMaximumTreeLength = 25;
|
---|
36 | private const string EstimationLimitsParameterName = "EstimationLimits";
|
---|
37 | private const string EstimationLimitsParameterDescription = "The lower and upper limit for the estimated value that can be returned by the symbolic classification model.";
|
---|
38 | private const string ModelCreatorParameterName = "ModelCreator";
|
---|
39 |
|
---|
40 | #region parameter properties
|
---|
41 | public IFixedValueParameter<DoubleLimit> EstimationLimitsParameter {
|
---|
42 | get { return (IFixedValueParameter<DoubleLimit>)Parameters[EstimationLimitsParameterName]; }
|
---|
43 | }
|
---|
44 | public IValueParameter<ISymbolicClassificationModelCreator> ModelCreatorParameter {
|
---|
45 | get { return (IValueParameter<ISymbolicClassificationModelCreator>)Parameters[ModelCreatorParameterName]; }
|
---|
46 | }
|
---|
47 | #endregion
|
---|
48 | #region properties
|
---|
49 | public DoubleLimit EstimationLimits {
|
---|
50 | get { return EstimationLimitsParameter.Value; }
|
---|
51 | }
|
---|
52 | public ISymbolicClassificationModelCreator ModelCreator {
|
---|
53 | get { return ModelCreatorParameter.Value; }
|
---|
54 | }
|
---|
55 | #endregion
|
---|
56 | [StorableConstructor]
|
---|
57 | protected SymbolicClassificationSingleObjectiveProblem(bool deserializing) : base(deserializing) { }
|
---|
58 | protected SymbolicClassificationSingleObjectiveProblem(SymbolicClassificationSingleObjectiveProblem original, Cloner cloner)
|
---|
59 | : base(original, cloner) {
|
---|
60 | RegisterEventHandlers();
|
---|
61 | }
|
---|
62 | public override IDeepCloneable Clone(Cloner cloner) { return new SymbolicClassificationSingleObjectiveProblem(this, cloner); }
|
---|
63 |
|
---|
64 | public SymbolicClassificationSingleObjectiveProblem()
|
---|
65 | : base(new ClassificationProblemData(), new SymbolicClassificationSingleObjectiveMeanSquaredErrorEvaluator(), new SymbolicDataAnalysisExpressionTreeCreator()) {
|
---|
66 | Parameters.Add(new FixedValueParameter<DoubleLimit>(EstimationLimitsParameterName, EstimationLimitsParameterDescription));
|
---|
67 | Parameters.Add(new ValueParameter<ISymbolicClassificationModelCreator>(ModelCreatorParameterName, "", new AccuracyMaximizingThresholdsModelCreator()));
|
---|
68 |
|
---|
69 | ApplyLinearScalingParameter.Value.Value = false;
|
---|
70 | EstimationLimitsParameter.Hidden = true;
|
---|
71 |
|
---|
72 | MaximumSymbolicExpressionTreeDepth.Value = InitialMaximumTreeDepth;
|
---|
73 | MaximumSymbolicExpressionTreeLength.Value = InitialMaximumTreeLength;
|
---|
74 |
|
---|
75 | RegisterEventHandlers();
|
---|
76 | ConfigureGrammarSymbols();
|
---|
77 | InitializeOperators();
|
---|
78 | UpdateEstimationLimits();
|
---|
79 | }
|
---|
80 |
|
---|
81 | [StorableHook(HookType.AfterDeserialization)]
|
---|
82 | private void AfterDeserialization() {
|
---|
83 | // BackwardsCompatibility3.4
|
---|
84 | #region Backwards compatible code, remove with 3.5
|
---|
85 | if (!Parameters.ContainsKey(ModelCreatorParameterName))
|
---|
86 | Parameters.Add(new ValueParameter<ISymbolicClassificationModelCreator>(ModelCreatorParameterName, "", new AccuracyMaximizingThresholdsModelCreator()));
|
---|
87 |
|
---|
88 | bool changed = false;
|
---|
89 | if (!Operators.OfType<SymbolicClassificationSingleObjectiveTrainingParetoBestSolutionAnalyzer>().Any()) {
|
---|
90 | Operators.Add(new SymbolicClassificationSingleObjectiveTrainingParetoBestSolutionAnalyzer());
|
---|
91 | changed = true;
|
---|
92 | }
|
---|
93 | if (!Operators.OfType<SymbolicClassificationSingleObjectiveValidationParetoBestSolutionAnalyzer>().Any()) {
|
---|
94 | Operators.Add(new SymbolicClassificationSingleObjectiveValidationParetoBestSolutionAnalyzer());
|
---|
95 | changed = true;
|
---|
96 | }
|
---|
97 | if (changed) ParameterizeOperators();
|
---|
98 | #endregion
|
---|
99 | RegisterEventHandlers();
|
---|
100 | }
|
---|
101 |
|
---|
102 | private void RegisterEventHandlers() {
|
---|
103 | SymbolicExpressionTreeGrammarParameter.ValueChanged += (o, e) => ConfigureGrammarSymbols();
|
---|
104 | ModelCreatorParameter.NameChanged += (o, e) => ParameterizeOperators();
|
---|
105 | }
|
---|
106 |
|
---|
107 | private void ConfigureGrammarSymbols() {
|
---|
108 | var grammar = SymbolicExpressionTreeGrammar as TypeCoherentExpressionGrammar;
|
---|
109 | if (grammar != null) grammar.ConfigureAsDefaultClassificationGrammar();
|
---|
110 | }
|
---|
111 |
|
---|
112 | private void InitializeOperators() {
|
---|
113 | Operators.Add(new SymbolicClassificationSingleObjectiveTrainingBestSolutionAnalyzer());
|
---|
114 | Operators.Add(new SymbolicClassificationSingleObjectiveValidationBestSolutionAnalyzer());
|
---|
115 | Operators.Add(new SymbolicClassificationSingleObjectiveOverfittingAnalyzer());
|
---|
116 | Operators.Add(new SymbolicClassificationSingleObjectiveTrainingParetoBestSolutionAnalyzer());
|
---|
117 | Operators.Add(new SymbolicClassificationSingleObjectiveValidationParetoBestSolutionAnalyzer());
|
---|
118 | Operators.Add(new SymbolicExpressionTreePhenotypicSimilarityCalculator());
|
---|
119 | Operators.Add(new SymbolicClassificationPhenotypicDiversityAnalyzer(Operators.OfType<SymbolicExpressionTreePhenotypicSimilarityCalculator>()));
|
---|
120 | ParameterizeOperators();
|
---|
121 | }
|
---|
122 |
|
---|
123 | private void UpdateEstimationLimits() {
|
---|
124 | if (ProblemData.TrainingIndices.Any()) {
|
---|
125 | var targetValues = ProblemData.Dataset.GetDoubleValues(ProblemData.TargetVariable, ProblemData.TrainingIndices).ToList();
|
---|
126 | var mean = targetValues.Average();
|
---|
127 | var range = targetValues.Max() - targetValues.Min();
|
---|
128 | EstimationLimits.Upper = mean + PunishmentFactor * range;
|
---|
129 | EstimationLimits.Lower = mean - PunishmentFactor * range;
|
---|
130 | } else {
|
---|
131 | EstimationLimits.Upper = double.MaxValue;
|
---|
132 | EstimationLimits.Lower = double.MinValue;
|
---|
133 | }
|
---|
134 | }
|
---|
135 |
|
---|
136 | protected override void OnProblemDataChanged() {
|
---|
137 | base.OnProblemDataChanged();
|
---|
138 | UpdateEstimationLimits();
|
---|
139 | }
|
---|
140 |
|
---|
141 | protected override void ParameterizeOperators() {
|
---|
142 | base.ParameterizeOperators();
|
---|
143 | if (Parameters.ContainsKey(EstimationLimitsParameterName)) {
|
---|
144 | var operators = Parameters.OfType<IValueParameter>().Select(p => p.Value).OfType<IOperator>().Union(Operators);
|
---|
145 | foreach (var op in operators.OfType<ISymbolicDataAnalysisBoundedOperator>())
|
---|
146 | op.EstimationLimitsParameter.ActualName = EstimationLimitsParameter.Name;
|
---|
147 | foreach (var op in operators.OfType<ISymbolicClassificationModelCreatorOperator>())
|
---|
148 | op.ModelCreatorParameter.ActualName = ModelCreatorParameter.Name;
|
---|
149 | }
|
---|
150 |
|
---|
151 | foreach (var op in Operators.OfType<ISolutionSimilarityCalculator>()) {
|
---|
152 | op.SolutionVariableName = SolutionCreator.SymbolicExpressionTreeParameter.ActualName;
|
---|
153 | op.QualityVariableName = Evaluator.QualityParameter.ActualName;
|
---|
154 |
|
---|
155 | if (op is SymbolicExpressionTreePhenotypicSimilarityCalculator) {
|
---|
156 | var phenotypicSimilarityCalculator = (SymbolicExpressionTreePhenotypicSimilarityCalculator)op;
|
---|
157 | phenotypicSimilarityCalculator.ProblemData = ProblemData;
|
---|
158 | phenotypicSimilarityCalculator.Interpreter = SymbolicExpressionTreeInterpreter;
|
---|
159 | }
|
---|
160 | }
|
---|
161 | }
|
---|
162 | }
|
---|
163 | }
|
---|