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source: branches/2895_PushGP_GenealogyAnalysis/HeuristicLab.Tests/Benchmark/GPTests.cs @ 17717

Last change on this file since 17717 was 15771, checked in by bburlacu, 7 years ago

#2895: Add solution skeleton for PushGP with genealogy analysis.

File size: 9.2 KB
Line 
1using System.Linq;
2// ReSharper disable PossibleNullReferenceException
3
4namespace HeuristicLab.Tests.Benchmark {
5  using System;
6  using System.Threading;
7
8  using HeuristicLab.Algorithms.GeneticAlgorithm;
9  using HeuristicLab.BenchmarkSuite;
10  using HeuristicLab.BenchmarkSuite.Problems;
11  using HeuristicLab.Data;
12  using HeuristicLab.ParallelEngine;
13  using HeuristicLab.Problems.ProgramSynthesis;
14
15  using Microsoft.VisualStudio.TestTools.UnitTesting;
16
17  [TestClass]
18  public class GpTests {
19
20    [TestMethod]
21    [TestProperty("Time", "Long")]
22    [TestCategory("ProblemTest")]
23    public void Checksum() {
24      Run<Checksum>();
25    }
26
27    [TestMethod]
28    [TestProperty("Time", "Long")]
29    [TestCategory("ProblemTest")]
30    public void CollatzNumbers() {
31      Run<CollatzNumbers>();
32    }
33
34    [TestMethod]
35    [TestProperty("Time", "Long")]
36    [TestCategory("ProblemTest")]
37    public void CompareStringLengths() {
38      Run<CompareStringLengths>();
39    }
40
41    [TestMethod]
42    [TestProperty("Time", "Long")]
43    [TestCategory("ProblemTest")]
44    public void CountOdds() {
45      Run<CountOdds>();
46    }
47
48    [TestMethod]
49    [TestProperty("Time", "Long")]
50    [TestCategory("ProblemTest")]
51    public void Digits() {
52      Run<Digits>();
53    }
54
55    [TestMethod]
56    [TestProperty("Time", "Long")]
57    [TestCategory("ProblemTest")]
58    public void DoubleLetters() {
59      Run<DoubleLetters>();
60    }
61
62    [TestMethod]
63    [TestProperty("Time", "Long")]
64    [TestCategory("ProblemTest")]
65    public void EvenSquares() {
66      Run<EvenSquares>();
67    }
68
69    [TestMethod]
70    [TestProperty("Time", "Long")]
71    [TestCategory("ProblemTest")]
72    public void ForLoopIndex() {
73      Run<ForLoopIndex>();
74    }
75
76    [TestMethod]
77    [TestProperty("Time", "Long")]
78    [TestCategory("ProblemTest")]
79    public void Grades() {
80      Run<Grades>();
81    }
82
83    [TestMethod]
84    [TestProperty("Time", "Long")]
85    [TestCategory("ProblemTest")]
86    public void LastIndexOfZero() {
87      Run<LastIndexOfZero>();
88    }
89
90    [TestMethod]
91    [TestProperty("Time", "Long")]
92    [TestCategory("ProblemTest")]
93    public void Median() {
94      Run<Median>();
95    }
96
97    [TestMethod]
98    [TestProperty("Time", "Long")]
99    [TestCategory("ProblemTest")]
100    public void MirrorImage() {
101      Run<MirrorImage>();
102    }
103
104    [TestMethod]
105    [TestProperty("Time", "Long")]
106    [TestCategory("ProblemTest")]
107    public void NegativeToZero() {
108      Run<NegativeToZero>();
109    }
110
111    [TestMethod]
112    [TestProperty("Time", "Long")]
113    [TestCategory("ProblemTest")]
114    public void NumberIo() {
115      Run<NumberIO>();
116    }
117
118    [TestMethod]
119    [TestProperty("Time", "Long")]
120    [TestCategory("ProblemTest")]
121    public void PigLatin() {
122      Run<PigLatin>();
123    }
124
125    [TestMethod]
126    [TestProperty("Time", "Long")]
127    [TestCategory("ProblemTest")]
128    public void ReplaceSpaceWithNewLine() {
129      Run<ReplaceSpaceWithNewline>();
130    }
131
132    [TestMethod]
133    [TestProperty("Time", "Long")]
134    [TestCategory("ProblemTest")]
135    public void ScrabbleScore() {
136      Run<ScrabbleScore>();
137    }
138
139    [TestMethod]
140    [TestProperty("Time", "Long")]
141    [TestCategory("ProblemTest")]
142    public void Smallest() {
143      Run<Smallest>();
144    }
145
146    [TestMethod]
147    [TestProperty("Time", "Long")]
148    [TestCategory("ProblemTest")]
149    public void SmallOrLarge() {
150      Run<SmallOrLarge>();
151    }
152
153    [TestMethod]
154    [TestProperty("Time", "Long")]
155    [TestCategory("ProblemTest")]
156    public void StringDifferences() {
157      Run<StringDifferences>();
158    }
159
160    [TestMethod]
161    [TestProperty("Time", "Long")]
162    [TestCategory("ProblemTest")]
163    public void StringLengthsBackwards() {
164      Run<StringLengthsBackwards>();
165    }
166
167    [TestMethod]
168    [TestProperty("Time", "Long")]
169    [TestCategory("ProblemTest")]
170    public void SumOfSquares() {
171      Run<SumOfSquares>();
172    }
173
174    [TestMethod]
175    [TestProperty("Time", "Long")]
176    [TestCategory("ProblemTest")]
177    public void SuperAnagrams() {
178      Run<SuperAnagrams>();
179    }
180
181    [TestMethod]
182    [TestProperty("Time", "Long")]
183    [TestCategory("ProblemTest")]
184    public void Syllables() {
185      Run<Syllables>();
186    }
187
188    [TestMethod]
189    [TestProperty("Time", "Long")]
190    [TestCategory("ProblemTest")]
191    public void VectorAverage() {
192      Run<VectorAverage>();
193    }
194
195    [TestMethod]
196    [TestProperty("Time", "Long")]
197    [TestCategory("ProblemTest")]
198    public void VectorSummed() {
199      Run<VectorSummed>();
200    }
201
202    [TestMethod]
203    [TestProperty("Time", "Long")]
204    [TestCategory("ProblemTest")]
205    public void WallisPi() {
206      Run<WallisPi>();
207    }
208
209    [TestMethod]
210    [TestProperty("Time", "Long")]
211    [TestCategory("ProblemTest")]
212    public void WordStats() {
213      Run<WordStats>();
214    }
215
216    [TestMethod]
217    [TestProperty("Time", "Long")]
218    [TestCategory("ProblemTest")]
219    public void XWordLines() {
220      Run<XWordLines>();
221    }
222
223    static void Run<T>() where T : IBenchmarkSuiteDataDescriptor, new() {
224      var trigger = new AutoResetEvent(false);
225      var alg = GetAlgorithm(new T());
226      Exception exception = null;
227
228      alg.ExceptionOccurred += (sender, args) => {
229        exception = args.Value;
230        trigger.Set();
231      };
232
233      alg.Stopped += (sender, args) => {
234        trigger.Set();
235      };
236
237      var lastGeneration = -1;
238      alg.ExecutionTimeChanged += (sender, args) => {
239        if (!alg.Results.Any() || !alg.Results.ContainsKey("CurrentBestQuality")) return;
240
241        var generation = (alg.Results["Generations"].Value as IntValue).Value;
242
243        if (lastGeneration != -1 && generation == lastGeneration) return;
244
245        Console.WriteLine(@"Generation: {0}", generation);
246
247        if (alg.Results.ContainsKey("CurrentBestQuality")) {
248          var best = (alg.Results["CurrentBestQuality"].Value as DoubleValue).Value;
249          Console.WriteLine(@"CurrentBestQuality: {0}", best);
250        }
251
252        if (alg.Results.ContainsKey("CurrentAverageQuality")) {
253          var average = (alg.Results["CurrentAverageQuality"].Value as DoubleValue).Value;
254          Console.WriteLine(@"CurrentAverageQuality: {0}", average);
255        }
256
257        if (alg.Results.ContainsKey("CurrentWorstQuality")) {
258          var worst = (alg.Results["CurrentWorstQuality"].Value as DoubleValue).Value;
259          Console.WriteLine(@"CurrentWorstQuality: {0}", worst);
260        }
261
262        Console.WriteLine();
263        lastGeneration = generation;
264      };
265
266      alg.Prepare();
267      alg.Start();
268      trigger.WaitOne();
269
270      if (exception != null) {
271        Console.WriteLine(exception.Message);
272        throw exception;
273      }
274
275      var finalGeneration = (alg.Results["Generations"].Value as IntValue).Value;
276      var bestQuality = (alg.Results["CurrentBestQuality"].Value as DoubleValue).Value;
277      var averageQuality = (alg.Results["CurrentAverageQuality"].Value as DoubleValue).Value;
278      var worstQuality = (alg.Results["CurrentWorstQuality"].Value as DoubleValue).Value;
279
280      Console.WriteLine(@"Final Generation: {0}", finalGeneration);
281      Console.WriteLine(@"CurrentBestQuality: {0}", bestQuality);
282      Console.WriteLine(@"CurrentAverageQuality: {0}", averageQuality);
283      Console.WriteLine(@"CurrentWorstQuality: {0}", worstQuality);
284    }
285
286    static GeneticAlgorithm GetAlgorithm(IBenchmarkSuiteDataDescriptor descriptor) {
287      var ga = new GeneticAlgorithm();
288
289      var problemData = descriptor.CreateProblemData();
290      var pushProblem = new PlushPushBenchmarkSuiteProblem();
291
292      pushProblem.Load(problemData);
293      ga.Name = "GA " + pushProblem.Name;
294
295      ga.Problem = pushProblem;
296
297      var crossover = ga.CrossoverParameter.ValidValues.OfType<AlternationCrossover>().First();
298
299      switch (problemData.ProblemType) {
300        case ProblemType.NumberIO:
301        case ProblemType.SmallOrLarge:
302        case ProblemType.Median:
303        case ProblemType.Smallest:
304          crossover.AlignmentDeviation = 5;
305          break;
306
307        default:
308          crossover.AlignmentDeviation = 10;
309          break;
310      }
311
312      crossover.AlternationRate = 0.01;
313      ga.Crossover = crossover;
314
315      ga.Selector = ga.SelectorParameter.ValidValues.OfType<LexicaseSelector>().First();
316
317      var mutator = ga.MutatorParameter.ValidValues.OfType<UniformMutation>().First();
318      mutator.InstructionMutationProbability = 0.875;
319      mutator.CloseMutationProbability = 0.125;
320      mutator.CloseIncrementRate = 0.1;
321      ga.Mutator = mutator;
322
323      ga.MutationProbability.Value = 0.8;
324      ga.SetSeedRandomly.Value = true;
325      ga.PopulationSize.Value = 1000;
326
327      ga.MaximumGenerations.Value = 9; // problemData.ProgramExecutionBudget / problemData.TrainingCount / 1000;
328
329      // remove unnecessary analyzers to improve performance
330      pushProblem.OperatorsParameter.Value
331        .RemoveAll(analyzer =>
332          analyzer.GetType() == typeof(IndividualZeroErrorAnalyzer) ||
333          analyzer.GetType() == typeof(PushExpressionFrequencyAnalyzer));
334
335      ga.Engine = new ParallelEngine();
336
337      return ga;
338    }
339  }
340}
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